Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0006926

Physical Location & Seq

Genomic Coordinates Forward (+)

8880128 .. 8882038

Gene Structure 1911 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG044300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGAAGTCTCCGGTGAAACTCAATCTGCTGAATACAACCGAGCTCAAGAGGTAAAGAGTTTCGATGATACGAAGGCTGGAGTCAAAGGCCTTGTAGATGCAGGCATAGGCAAAGTCCCAAAGATATTCATAGCACCATCTAATGATCATGCTGATTTTCCAACATGTCAGCAACCAAATTTGCAAATTCCTGTCATAAATCTCGGTGGCCTCTACGGTGATCGCCACAAGGAGATTGTTAATGAAGTTCGGATTGCATCCGAGACATGGGGTTTCTTCCAAGTGGTCAATCATGGAGTTCCATTGAATGTGCTTGAAGATATGATCCAAGGCGTAAGGAGGTTTAACGAGCTAGATCTTGAGGCGAAGAAAGAGTTCTATAGTCGTGATCTAAAGAGAACTGTGAGATTCAATAGCAATTACGATCTCTACCAGTCAAAAGCAGCTAATTGGAGGGACACTTTGGCTTTTACCAAGCCCGCAGTTGATCATGAACCCCAAGAACTCCCTCAAGTTTGTAGAGAAGTAGCACTTGAGTACACAAACCATGTCATAGAGTTGGCAGATCAACTCTTTGGATTGTTATCAGAGGCTCTGGAACTCAAACCGGATTACCTAACAAGGGAAATGGAGTGTGCTAAGTTTTATGCCTGTGTCTGCCACTACTATCCAGCATGCCCTGAACCAGAGCTAACTTTGGGAGCTAGCAAGCATTCAGATCCAGCGTTCCTCACAATTCTTCTTCAAGACAAAATCGGCGGCCTTCAAGTCCTTCATGACAATCAGTGGGTTAACGTTGACCCCATTTCAGGAGGCTTAGTAATAAACATAGGGGACTTTCTCCAGGCCATATCAAATGACAGGCTCAAGAGTGTTCAACATAGAGTGCTCACCAACCGTGTCGGTCCACGAGTTTCCGTAGCTTATTTTTTTAAAGGAGAGACTGCTGCCAAGTCTTATGGTCCGATCAAAGAGCTCATATCAGATGAAAACCCTCCTCTCTACAAGGATTTCTCCATAGATGAGTATCATGGCAAGTTCTTTTCTCAAGGGCTTGATGAGAAGTCAGGACTTGACCAGTTCAAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

363

Amino Acids

40.92

Weight (kDa)

5.22

Isoelectric Point (pI)

34.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	63 - 166	5.4e-19	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	217 - 311	3.9e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006926)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03310
malus_domestica	MD05G1014300.v1.1 MD13G1212100.v1.1
prunus_persica	Prupe.1G037000_v2.0.a1 Prupe.1G037000_v2.0.a1 Prupe.1G037000_v2.0.a1
pyrus_communis	pycom13g18390 pycom16g18030
rosa_chinensis	RchiOBHm_Chr4g0392321 RchiOBHm_Chr4g0392351
rosa_laevigata	RLG00000009818
rosa_multiflora	Rmu_sc0001231.1_g000012 Rmu_sc0001231.1_g000019
rosa_roxburghii	Rroxscaffold_5G00337490 Rroxscaffold_5G00337530
rosa_rugosa	Rorug03G0338300
rosa_samantha	Rh4AG041700 Rh4AG042000 Rh4BG036600 Rh4BG036900 Rh4CG044300 Rh4CG044600 Rh4CG044800 Rh4DG039000
rosa_wichuraiana	Rw4G003230 Rw4G003250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	480, 759
AclI	AACGTT	1 cut(s)	795
AclWI	GGATC	2 cut(s)	319, 713
AcsI	RAATTY	2 cut(s)	178, 186
AfaI	GTAC	1 cut(s)	539
AfiI	CCNNNNNNNGG	3 cut(s)	267, 622, 809
AflIII	ACRYGT	1 cut(s)	164
AgsI	TTSAA	7 cut(s)	307, 317, 412, 746, 767, 878, 1084
AjnI	CCWGG	1 cut(s)	843
AluBI	AGCT	8 cut(s)	44, 352, 446, 691, 704, 923, 976, 1087
AluI	AGCT	8 cut(s)	44, 352, 446, 691, 704, 923, 976, 1087
Alw21I	GWGCWC	3 cut(s)	46, 891, 978
Alw26I	GTCTC	3 cut(s)	13, 257, 935
AlwI	GGATC	2 cut(s)	319, 713
AoxI	GGCC	4 cut(s)	88, 208, 760, 846
ApeKI	GCWGC	2 cut(s)	443, 947
ApoI	RAATTY	2 cut(s)	178, 186
Asp700I	GAANNNNTTC	1 cut(s)	374
AspS9I	GGNCC	2 cut(s)	905, 962
AsuHPI	GGTGA	3 cut(s)	26, 230, 883
AsuNHI	GCTAGC	1 cut(s)	704
AvaII	GGWCC	2 cut(s)	905, 962
BanII	GRGCYC	2 cut(s)	46, 978
BauI	CACGAG	1 cut(s)	909
Bbv12I	GWGCWC	3 cut(s)	46, 891, 978
BbvI	GCAGC	2 cut(s)	455, 934
BccI	CCATC	1 cut(s)	145
BciT130I	CCWGG	1 cut(s)	845
BclI	TGATCA	2 cut(s)	145, 487
BcoDI	GTCTC	3 cut(s)	13, 257, 935
BfaI	CTAG	2 cut(s)	353, 705
BfmI	CTRYAG	1 cut(s)	379
BglII	AGATCT	1 cut(s)	355
BisI	GCNGC	3 cut(s)	444, 760, 948
BlsI	GCNGC	3 cut(s)	445, 761, 949
Bme1390I	CCNGG	1 cut(s)	845
Bme18I	GGWCC	2 cut(s)	905, 962
BmgT120I	GGNCC	2 cut(s)	905, 962
BmrFI	CCNGG	1 cut(s)	845
BmsI	GCATC	2 cut(s)	88, 266
BmtI	GCTAGC	1 cut(s)	708
BpmI	CTGGAG	2 cut(s)	99, 827
BpuEI	CTTGAG	6 cut(s)	30, 380, 495, 554, 851, 1032
BsaBI	GATNNNNATC	2 cut(s)	583, 1026
BsaJI	CCNNGG	1 cut(s)	328
BsaWI	WCCGGW	2 cut(s)	11, 607
BsaXI	ACNNNNNCTCC	2 cut(s)	804, 834
Bsc4I	CCNNNNNNNGG	3 cut(s)	267, 622, 809
Bse1I	ACTGG	2 cut(s)	433, 1078
Bse8I	GATNNNNATC	2 cut(s)	583, 1026
BseBI	CCWGG	1 cut(s)	845
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	1 cut(s)	257
BseJI	GATNNNNATC	2 cut(s)	583, 1026
BseLI	CCNNNNNNNGG	3 cut(s)	267, 622, 809
BseNI	ACTGG	2 cut(s)	433, 1078
BseRI	GAGGAG	1 cut(s)	987
BseXI	GCAGC	2 cut(s)	455, 934
BshFI	GGCC	4 cut(s)	90, 210, 762, 848
BsiHKAI	GWGCWC	3 cut(s)	46, 891, 978
BsiSI	CCGG	2 cut(s)	12, 608
BslFI	GGGAC	3 cut(s)	101, 470, 848
BslI	CCNNNNNNNGG	3 cut(s)	267, 622, 809
BsmAI	GTCTC	3 cut(s)	13, 257, 935
BsmFI	GGGAC	3 cut(s)	101, 470, 848
BsmI	GAATGC	1 cut(s)	712
BsnI	GGCC	4 cut(s)	90, 210, 762, 848
Bsp1286I	GDGCHC	3 cut(s)	46, 891, 978
BspACI	CCGC	2 cut(s)	480, 759
BspANI	GGCC	4 cut(s)	90, 210, 762, 848
BspHI	TCATGA	2 cut(s)	490, 775
BspOI	GCTAGC	1 cut(s)	708
BspPI	GGATC	2 cut(s)	319, 713
BsrI	ACTGG	2 cut(s)	433, 1078
BssECI	CCNNGG	1 cut(s)	328
BssSI	CACGAG	1 cut(s)	909
BssT1I	CCWWGG	1 cut(s)	328
Bst2BI	CACGAG	1 cut(s)	909
Bst2UI	CCWGG	1 cut(s)	845
Bst4CI	ACNGT	3 cut(s)	218, 403, 899
BstC8I	GCNNGC	5 cut(s)	103, 480, 676, 706, 710
BstDEI	CTNAG	2 cut(s)	639, 817
BstF5I	GGATG	1 cut(s)	257
BstMAI	GTCTC	3 cut(s)	13, 257, 935
BstNI	CCWGG	1 cut(s)	845
BstNSI	RCATGY	2 cut(s)	168, 678
BstSCI	CCNGG	1 cut(s)	843
BstSFI	CTRYAG	1 cut(s)	379
BstV1I	GCAGC	2 cut(s)	455, 934
BstX2I	RGATCY	2 cut(s)	355, 718
BstYI	RGATCY	2 cut(s)	355, 718
BsuRI	GGCC	4 cut(s)	90, 210, 762, 848
BtsCI	GGATG	1 cut(s)	257
BtsIMutI	CAGTG	1 cut(s)	791
Cac8I	GCNNGC	5 cut(s)	103, 480, 676, 706, 710
CciI	TCATGA	2 cut(s)	490, 775
Cfr13I	GGNCC	2 cut(s)	905, 962
Csp6I	GTAC	1 cut(s)	538
CviAII	CATG	9 cut(s)	149, 165, 267, 293, 491, 548, 675, 776, 1031
CviQI	GTAC	1 cut(s)	538
DdeI	CTNAG	2 cut(s)	639, 817
DraI	TTTAAA	1 cut(s)	934
Ecl136II	GAGCTC	2 cut(s)	44, 976
Eco130I	CCWWGG	1 cut(s)	328
Eco147I	AGGCCT	1 cut(s)	90
Eco24I	GRGCYC	2 cut(s)	46, 978
Eco47I	GGWCC	2 cut(s)	905, 962
Eco53kI	GAGCTC	2 cut(s)	44, 976
EcoICRI	GAGCTC	2 cut(s)	44, 976
EcoRII	CCWGG	1 cut(s)	843
EcoT14I	CCWWGG	1 cut(s)	328
EcoT38I	GRGCYC	2 cut(s)	46, 978
ErhI	CCWWGG	1 cut(s)	328
FaeI	CATG	9 cut(s)	152, 168, 270, 296, 494, 551, 678, 779, 1034
FalI	AAGNNNNNCTT	2 cut(s)	516, 548
FaqI	GGGAC	3 cut(s)	101, 470, 848
FatI	CATG	9 cut(s)	148, 164, 266, 292, 490, 547, 674, 775, 1030
FauI	CCCGC	1 cut(s)	487
FbaI	TGATCA	2 cut(s)	145, 487
Fnu4HI	GCNGC	3 cut(s)	444, 760, 948
FokI	GGATG	1 cut(s)	244
FriOI	GRGCYC	2 cut(s)	46, 978
Fsp4HI	GCNGC	3 cut(s)	444, 760, 948
FspBI	CTAG	2 cut(s)	353, 705
GluI	GCNGC	3 cut(s)	444, 760, 948
GsuI	CTGGAG	2 cut(s)	99, 827
HaeIII	GGCC	4 cut(s)	90, 210, 762, 848
HapII	CCGG	2 cut(s)	12, 608
Hin1II	CATG	9 cut(s)	152, 168, 270, 296, 494, 551, 678, 779, 1034
HincII	GTYRAC	2 cut(s)	793, 799
HindII	GTYRAC	2 cut(s)	793, 799
HinfI	GANTC	2 cut(s)	81, 408
HpaI	GTTAAC	1 cut(s)	793
HpaII	CCGG	2 cut(s)	12, 608
HphI	GGTGA	3 cut(s)	26, 230, 883
Hpy166II	GTNNAC	4 cut(s)	540, 793, 799, 908
Hpy188I	TCNGA	6 cut(s)	252, 262, 589, 718, 966, 985
Hpy8I	GTNNAC	4 cut(s)	540, 793, 799, 908
HpyAV	CCTTC	3 cut(s)	67, 773, 782
HpyCH4III	ACNGT	3 cut(s)	218, 403, 899
HpyCH4IV	ACGT	1 cut(s)	795
HpyCH4V	TGCA	3 cut(s)	101, 184, 257
HpyF3I	CTNAG	2 cut(s)	639, 817
HpySE526I	ACGT	1 cut(s)	795
Hsp92II	CATG	9 cut(s)	152, 168, 270, 296, 494, 551, 678, 779, 1034
Ksp22I	TGATCA	2 cut(s)	145, 487
KspAI	GTTAAC	1 cut(s)	793
LmnI	GCTCC	1 cut(s)	701
Lsp1109I	GCAGC	2 cut(s)	455, 934
LweI	GCATC	2 cut(s)	88, 266
MaeI	CTAG	2 cut(s)	353, 705
MaeII	ACGT	1 cut(s)	795
MboII	GAAGA	5 cut(s)	268, 329, 379, 731, 734
MflI	RGATCY	2 cut(s)	355, 718
MhlI	GDGCHC	3 cut(s)	46, 891, 978
MluCI	AATT	5 cut(s)	178, 186, 418, 448, 735
MlyI	GAGTC	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	185
MroXI	GAANNNNTTC	1 cut(s)	374
MseI	TTAA	4 cut(s)	240, 345, 792, 933
MspI	CCGG	2 cut(s)	12, 608
MspR9I	CCNGG	1 cut(s)	845
Mva1269I	GAATGC	1 cut(s)	712
MvaI	CCWGG	1 cut(s)	845
NheI	GCTAGC	1 cut(s)	704
NlaIII	CATG	9 cut(s)	152, 168, 270, 296, 494, 551, 678, 779, 1034
NspI	RCATGY	2 cut(s)	168, 678
PaeI	GCATGC	1 cut(s)	678
PagI	TCATGA	2 cut(s)	490, 775
PceI	AGGCCT	1 cut(s)	90
PciI	ACATGT	1 cut(s)	164
PctI	GAATGC	1 cut(s)	712
PdmI	GAANNNNTTC	1 cut(s)	374
PfeI	GAWTC	1 cut(s)	408
PkrI	GCNGC	3 cut(s)	445, 761, 949
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
PscI	ACATGT	1 cut(s)	164
Psp124BI	GAGCTC	2 cut(s)	46, 978
Psp1406I	AACGTT	1 cut(s)	795
Psp6I	CCWGG	1 cut(s)	843
PspGI	CCWGG	1 cut(s)	843
PspPI	GGNCC	2 cut(s)	905, 962
PsuI	RGATCY	2 cut(s)	355, 718
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
SacI	GAGCTC	2 cut(s)	46, 978
SaqAI	TTAA	4 cut(s)	240, 345, 792, 933
SatI	GCNGC	3 cut(s)	444, 760, 948
Sau96I	GGNCC	2 cut(s)	905, 962
SchI	GAGTC	1 cut(s)	90
ScrFI	CCNGG	1 cut(s)	845
SduI	GDGCHC	3 cut(s)	46, 891, 978
SfaNI	GCATC	2 cut(s)	88, 266
SfcI	CTRYAG	1 cut(s)	379
SinI	GGWCC	2 cut(s)	905, 962
SmlI	CTYRAG	6 cut(s)	45, 359, 510, 533, 866, 1047
SmoI	CTYRAG	6 cut(s)	45, 359, 510, 533, 866, 1047
SphI	GCATGC	1 cut(s)	678
Sse9I	AATT	5 cut(s)	178, 186, 418, 448, 735
SseBI	AGGCCT	1 cut(s)	90
SsiI	CCGC	2 cut(s)	480, 759
SspMI	CTAG	2 cut(s)	353, 705
SstI	GAGCTC	2 cut(s)	46, 978
StuI	AGGCCT	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	843
StyI	CCWWGG	1 cut(s)	328
TaaI	ACNGT	3 cut(s)	218, 403, 899
TaiI	ACGT	1 cut(s)	798
TaqI	TCGA	1 cut(s)	63
TaqII	GACCGA	1 cut(s)	893
TasI	AATT	5 cut(s)	178, 186, 418, 448, 735
TatI	WGTACW	1 cut(s)	537
TauI	GCSGC	1 cut(s)	762
TfiI	GAWTC	1 cut(s)	408
Tru1I	TTAA	4 cut(s)	240, 345, 792, 933
Tru9I	TTAA	4 cut(s)	240, 345, 792, 933
TscAI	CASTG	1 cut(s)	791
TseI	GCWGC	2 cut(s)	443, 947
TspDTI	ATGAA	5 cut(s)	118, 258, 507, 764, 1002
TspGWI	ACGGA	1 cut(s)	907
TspRI	CASTG	1 cut(s)	791
VpaK11BI	GGWCC	2 cut(s)	905, 962
XapI	RAATTY	2 cut(s)	178, 186
XceI	RCATGY	2 cut(s)	168, 678
XmnI	GAANNNNTTC	1 cut(s)	374
XspI	CTAG	2 cut(s)	353, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.