Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006926

Physical Location & Seq

Genomic Coordinates Forward (+)

5712494 .. 5717505

Gene Structure 5012 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00337530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGGAAGTCTCAGGTGAAACTCAATCTGCTGAATACAACCGAGCTCAAGAGGTAAAGAGTTTCGATGATACAAAGGCTGGAGTCAAAGGCCTTGTAGATGCAGGCATAGGCAAAGTCCCAAAGATATTCATAACACCATCCGATGATCATGCTGATTTTCCAACATGTCAGCAACCAAATTTGCAAATTCCTGTCATAAATCTCGGTGGCCTCTACGGTGATCGCCACAAGGAGATTGTTAATGAAGTTCGGATTGCATCCGAGACATGGGGTTTCTTCCAAGTGGTCAATCATGGAGTTCCATTGAATGTGCTTGAAGATATGATCCAAGGCGTAAGGAGGTTTAATGAGCAAGATCTTGAGGTGAAGAAAGAGTTCTATAGTCGTGATCTAAAGAGAACTGTGAGATTCAATAGCAATTACGATCTCTACCAGTCAAAAGCAGCTAATTGGAGGGACACTTTGGCTTTTACCAAGCCCGCAGTGGATCATGAACCCCAAGAACTCCCTCAAGTTTGTAGAGAAGTAGCACTTGAGTACACAAACCATGTCATAGAGTTGGCAGATCAACTCTTTGGATTGTTATCAGAGGCTCTGGAACTCAAACCGGATTACCTAACAAGGGAAATGGAGTGTGCTAAGTTTTATACCTGTGTCTGCCACTACTATCCAGCATGCCCTGAACCAGAGTTAACTTTGGGAACTAGCAAGCATTCAGATCCAGCGTTCCTCACAATTCTTCTTCAAGACAAAATCGGTGGCCTTCAAGTCCTTCATGACAATCAGTGGGTTAACGTTGACCCCATTTCAGGAGGCTTAGTAATAAACATAGGGGACTTTCTCCAGGCCATATCAAATGACAGGCTCAAGAGTGTTCAACATAGAGCGCTCACCAACCGTGTCGGTCCACGGGTTTCCGTAGCTTATTTTTTTAAGGGAGAGACTGCTGCCATGTCTTATGGTCCGATCAAAGAGCTAATATCAGATGAAAACCCTCCTCTCTACAAGGATTTCTCCATAGATGAGTATCATGGCAAGTTCTTTTCTCAAGGGCTTGATGAGAAGTCTGGACTTGACCACCTCCTCAACCAAATGCCCCACCTCTCCGACCCCAAAGTCATCGCCGCCATGACTCGCGCCGTCTCCGACGTCGCCCGCACCCATTCCGTCCTCATCGCCCTCGGCGACTATCCCGACCACGAGGCCGTCGCCGCCCAATCACACCCTCAACGGCGATCTAAACTCTCCTTCATCAACCCTTCCGAAATCGTAGCCGAATTCTCCCACCACGACCCCAACGTTGCCCAAATCAACAACGACAGCTTCGGTCTCCGCCCGACTCCATCATCCAACCTCCTACAGTCCAAGTGGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

458

Amino Acids

51.45

Weight (kDa)

5.35

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	63 - 165	3.9e-18	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	217 - 311	1.6e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006926)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03310
malus_domestica	MD05G1014300.v1.1 MD13G1212100.v1.1
prunus_persica	Prupe.1G037000_v2.0.a1 Prupe.1G037000_v2.0.a1 Prupe.1G037000_v2.0.a1
pyrus_communis	pycom13g18390 pycom16g18030
rosa_chinensis	RchiOBHm_Chr4g0392321 RchiOBHm_Chr4g0392351
rosa_laevigata	RLG00000009818
rosa_multiflora	Rmu_sc0001231.1_g000012 Rmu_sc0001231.1_g000019
rosa_roxburghii	Rroxscaffold_5G00337490 Rroxscaffold_5G00337530
rosa_rugosa	Rorug03G0338300
rosa_samantha	Rh4AG041700 Rh4AG042000 Rh4BG036600 Rh4BG036900 Rh4CG044300 Rh4CG044600 Rh4CG044800 Rh4DG039000
rosa_wichuraiana	Rw4G003230 Rw4G003250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1115
AatII	GACGTC	1 cut(s)	1152
AccII	CGCG	1 cut(s)	1137
AciI	CCGC	5 cut(s)	480, 1125, 1156, 1212, 1333
AclI	AACGTT	2 cut(s)	795, 1299
AclWI	GGATC	3 cut(s)	319, 495, 713
AcsI	RAATTY	3 cut(s)	178, 186, 1277
AcyI	GRCGYC	1 cut(s)	1149
AfaI	GTAC	1 cut(s)	539
AfeI	AGCGCT	1 cut(s)	888
AfiI	CCNNNNNNNGG	3 cut(s)	267, 622, 809
AflIII	ACRYGT	1 cut(s)	164
AgsI	TTSAA	6 cut(s)	307, 317, 412, 746, 767, 878
AjnI	CCWGG	1 cut(s)	843
AluBI	AGCT	5 cut(s)	44, 446, 923, 976, 1323
AluI	AGCT	5 cut(s)	44, 446, 923, 976, 1323
Alw21I	GWGCWC	1 cut(s)	46
Alw26I	GTCTC	5 cut(s)	13, 257, 935, 1147, 1334
AlwI	GGATC	3 cut(s)	319, 495, 713
Aor51HI	AGCGCT	1 cut(s)	888
AoxI	GGCC	5 cut(s)	88, 208, 760, 846, 1203
ApeKI	GCWGC	2 cut(s)	443, 947
ApoI	RAATTY	3 cut(s)	178, 186, 1277
Asp700I	GAANNNNTTC	1 cut(s)	374
AspLEI	GCGC	2 cut(s)	889, 1139
AspS9I	GGNCC	2 cut(s)	905, 962
AsuHPI	GGTGA	4 cut(s)	26, 230, 376, 883
AvaII	GGWCC	2 cut(s)	905, 962
BanII	GRGCYC	1 cut(s)	46
BauI	CACGAG	1 cut(s)	1199
Bbv12I	GWGCWC	1 cut(s)	46
BbvI	GCAGC	2 cut(s)	455, 934
BccI	CCATC	2 cut(s)	145, 1351
BceAI	ACGGC	3 cut(s)	1124, 1190, 1247
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	1 cut(s)	845
BclI	TGATCA	1 cut(s)	145
BcoDI	GTCTC	5 cut(s)	13, 257, 935, 1147, 1334
BfaI	CTAG	1 cut(s)	705
BfmI	CTRYAG	2 cut(s)	379, 1358
BfoI	RGCGCY	1 cut(s)	890
BglII	AGATCT	1 cut(s)	355
BisI	GCNGC	4 cut(s)	444, 948, 1125, 1212
BlsI	GCNGC	4 cut(s)	445, 949, 1126, 1213
Bme1390I	CCNGG	1 cut(s)	845
Bme18I	GGWCC	2 cut(s)	905, 962
BmgT120I	GGNCC	2 cut(s)	905, 962
BmrFI	CCNGG	1 cut(s)	845
BmsI	GCATC	2 cut(s)	88, 266
BpmI	CTGGAG	2 cut(s)	99, 827
BpuEI	CTTGAG	6 cut(s)	30, 380, 495, 554, 851, 1032
BsaBI	GATNNNNATC	2 cut(s)	583, 1026
BsaHI	GRCGYC	1 cut(s)	1149
BsaI	GGTCTC	1 cut(s)	1334
BsaJI	CCNNGG	3 cut(s)	328, 908, 1180
BsaWI	WCCGGW	1 cut(s)	607
BsaXI	ACNNNNNCTCC	2 cut(s)	804, 834
Bsc4I	CCNNNNNNNGG	3 cut(s)	267, 622, 809
Bse1I	ACTGG	1 cut(s)	433
Bse8I	GATNNNNATC	2 cut(s)	583, 1026
BseBI	CCWGG	1 cut(s)	845
BseDI	CCNNGG	3 cut(s)	328, 908, 1180
BseGI	GGATG	3 cut(s)	137, 257, 1346
BseJI	GATNNNNATC	2 cut(s)	583, 1026
BseLI	CCNNNNNNNGG	3 cut(s)	267, 622, 809
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	433
BseRI	GAGGAG	2 cut(s)	987, 1073
BseXI	GCAGC	2 cut(s)	455, 934
Bsh1236I	CGCG	1 cut(s)	1137
BshFI	GGCC	5 cut(s)	90, 210, 762, 848, 1205
BsiHKAI	GWGCWC	1 cut(s)	46
BsiSI	CCGG	1 cut(s)	608
BslFI	GGGAC	3 cut(s)	101, 470, 848
BslI	CCNNNNNNNGG	3 cut(s)	267, 622, 809
BsmAI	GTCTC	5 cut(s)	13, 257, 935, 1147, 1334
BsmBI	CGTCTC	1 cut(s)	1147
BsmFI	GGGAC	3 cut(s)	101, 470, 848
BsmI	GAATGC	1 cut(s)	712
BsnI	GGCC	5 cut(s)	90, 210, 762, 848, 1205
Bso31I	GGTCTC	1 cut(s)	1334
Bsp1286I	GDGCHC	1 cut(s)	46
BspACI	CCGC	5 cut(s)	480, 1125, 1156, 1212, 1333
BspANI	GGCC	5 cut(s)	90, 210, 762, 848, 1205
BspCNI	CTCAG	1 cut(s)	23
BspFNI	CGCG	1 cut(s)	1137
BspHI	TCATGA	2 cut(s)	490, 775
BspPI	GGATC	3 cut(s)	319, 495, 713
BspTNI	GGTCTC	1 cut(s)	1334
BsrI	ACTGG	1 cut(s)	433
BssECI	CCNNGG	3 cut(s)	328, 908, 1180
BssNI	GRCGYC	1 cut(s)	1149
BssSI	CACGAG	1 cut(s)	1199
BssT1I	CCWWGG	1 cut(s)	328
Bst2BI	CACGAG	1 cut(s)	1199
Bst2UI	CCWGG	1 cut(s)	845
Bst4CI	ACNGT	4 cut(s)	218, 403, 899, 1362
BstACI	GRCGYC	1 cut(s)	1149
BstC8I	GCNNGC	5 cut(s)	103, 480, 676, 710, 1156
BstDEI	CTNAG	3 cut(s)	10, 639, 817
BstDSI	CCRYGG	1 cut(s)	908
BstF5I	GGATG	3 cut(s)	137, 257, 1346
BstFNI	CGCG	1 cut(s)	1137
BstH2I	RGCGCY	1 cut(s)	890
BstHHI	GCGC	2 cut(s)	889, 1139
BstMAI	GTCTC	5 cut(s)	13, 257, 935, 1147, 1334
BstMWI	GCNNNNNNNGC	1 cut(s)	1211
BstNI	CCWGG	1 cut(s)	845
BstNSI	RCATGY	2 cut(s)	168, 678
BstSCI	CCNGG	1 cut(s)	843
BstSFI	CTRYAG	2 cut(s)	379, 1358
BstUI	CGCG	1 cut(s)	1137
BstV1I	GCAGC	2 cut(s)	455, 934
BstX2I	RGATCY	2 cut(s)	355, 718
BstYI	RGATCY	2 cut(s)	355, 718
BsuRI	GGCC	5 cut(s)	90, 210, 762, 848, 1205
BtgI	CCRYGG	1 cut(s)	908
BtgZI	GCGATG	2 cut(s)	1105, 1159
BtsCI	GGATG	3 cut(s)	137, 257, 1346
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	2 cut(s)	489, 791
Cac8I	GCNNGC	5 cut(s)	103, 480, 676, 710, 1156
CciI	TCATGA	2 cut(s)	490, 775
CfoI	GCGC	2 cut(s)	889, 1139
Cfr13I	GGNCC	2 cut(s)	905, 962
Csp6I	GTAC	1 cut(s)	538
CspCI	CAANNNNNGTGG	2 cut(s)	739, 774
CviQI	GTAC	1 cut(s)	538
DdeI	CTNAG	3 cut(s)	10, 639, 817
DrdI	GACNNNNNNGTC	1 cut(s)	1115
DseDI	GACNNNNNNGTC	1 cut(s)	1115
EciI	GGCGGA	1 cut(s)	1322
Ecl136II	GAGCTC	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	328
Eco147I	AGGCCT	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	46
Eco31I	GGTCTC	1 cut(s)	1334
Eco47I	GGWCC	2 cut(s)	905, 962
Eco47III	AGCGCT	1 cut(s)	888
Eco53kI	GAGCTC	1 cut(s)	44
EcoICRI	GAGCTC	1 cut(s)	44
EcoRI	GAATTC	1 cut(s)	1277
EcoRII	CCWGG	1 cut(s)	843
EcoT14I	CCWWGG	1 cut(s)	328
EcoT38I	GRGCYC	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	328
Esp3I	CGTCTC	1 cut(s)	1147
FalI	AAGNNNNNCTT	2 cut(s)	516, 548
FaqI	GGGAC	3 cut(s)	101, 470, 848
FauI	CCCGC	2 cut(s)	487, 1163
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	4 cut(s)	444, 948, 1125, 1212
FokI	GGATG	3 cut(s)	124, 244, 1333
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	4 cut(s)	444, 948, 1125, 1212
FspBI	CTAG	1 cut(s)	705
GlaI	GCGC	2 cut(s)	888, 1138
GluI	GCNGC	4 cut(s)	444, 948, 1125, 1212
GsuI	CTGGAG	2 cut(s)	99, 827
HaeII	RGCGCY	1 cut(s)	890
HaeIII	GGCC	5 cut(s)	90, 210, 762, 848, 1205
HapII	CCGG	1 cut(s)	608
HhaI	GCGC	2 cut(s)	889, 1139
Hin1I	GRCGYC	1 cut(s)	1149
Hin6I	GCGC	2 cut(s)	887, 1137
HinP1I	GCGC	2 cut(s)	887, 1137
HincII	GTYRAC	3 cut(s)	693, 793, 799
HindII	GTYRAC	3 cut(s)	693, 793, 799
HinfI	GANTC	4 cut(s)	81, 408, 1132, 1339
HpaI	GTTAAC	2 cut(s)	693, 793
HpaII	CCGG	1 cut(s)	608
HphI	GGTGA	4 cut(s)	26, 230, 376, 883
Hpy166II	GTNNAC	5 cut(s)	540, 693, 793, 799, 908
Hpy8I	GTNNAC	5 cut(s)	540, 693, 793, 799, 908
Hpy99I	CGWCG	3 cut(s)	1151, 1154, 1211
HpyAV	CCTTC	4 cut(s)	773, 782, 1258, 1269
HpyCH4III	ACNGT	4 cut(s)	218, 403, 899, 1362
HpyCH4IV	ACGT	3 cut(s)	795, 1149, 1299
HpyCH4V	TGCA	3 cut(s)	101, 184, 257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1211
HpyF3I	CTNAG	3 cut(s)	10, 639, 817
HpySE526I	ACGT	3 cut(s)	795, 1149, 1299
Hsp92I	GRCGYC	1 cut(s)	1149
HspAI	GCGC	2 cut(s)	887, 1137
Ksp22I	TGATCA	1 cut(s)	145
KspAI	GTTAAC	2 cut(s)	693, 793
Lsp1109I	GCAGC	2 cut(s)	455, 934
LweI	GCATC	2 cut(s)	88, 266
MaeI	CTAG	1 cut(s)	705
MaeII	ACGT	3 cut(s)	795, 1149, 1299
MboII	GAAGA	5 cut(s)	268, 329, 379, 731, 734
MflI	RGATCY	2 cut(s)	355, 718
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	6 cut(s)	178, 186, 418, 448, 735, 1277
MlyI	GAGTC	3 cut(s)	90, 1126, 1333
MmeI	TCCRAC	4 cut(s)	185, 1131, 1170, 1374
MroXI	GAANNNNTTC	1 cut(s)	374
MseI	TTAA	5 cut(s)	240, 345, 692, 792, 933
MspI	CCGG	1 cut(s)	608
MspR9I	CCNGG	1 cut(s)	845
Mva1269I	GAATGC	1 cut(s)	712
MvaI	CCWGG	1 cut(s)	845
MvnI	CGCG	1 cut(s)	1137
MwoI	GCNNNNNNNGC	1 cut(s)	1211
NmeAIII	GCCGAG	1 cut(s)	1161
NspI	RCATGY	2 cut(s)	168, 678
PaeI	GCATGC	1 cut(s)	678
PagI	TCATGA	2 cut(s)	490, 775
PceI	AGGCCT	1 cut(s)	90
PciI	ACATGT	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	2 cut(s)	1182, 1296
PctI	GAATGC	1 cut(s)	712
PdmI	GAANNNNTTC	1 cut(s)	374
PfeI	GAWTC	1 cut(s)	408
PkrI	GCNGC	4 cut(s)	445, 949, 1126, 1213
PleI	GAGTC	3 cut(s)	89, 1126, 1333
PpsI	GAGTC	3 cut(s)	89, 1126, 1333
PscI	ACATGT	1 cut(s)	164
Psp124BI	GAGCTC	1 cut(s)	46
Psp1406I	AACGTT	2 cut(s)	795, 1299
Psp6I	CCWGG	1 cut(s)	843
PspGI	CCWGG	1 cut(s)	843
PspPI	GGNCC	2 cut(s)	905, 962
PsuI	RGATCY	2 cut(s)	355, 718
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
SacI	GAGCTC	1 cut(s)	46
SaqAI	TTAA	5 cut(s)	240, 345, 692, 792, 933
SatI	GCNGC	4 cut(s)	444, 948, 1125, 1212
Sau96I	GGNCC	2 cut(s)	905, 962
SchI	GAGTC	3 cut(s)	90, 1126, 1333
ScrFI	CCNGG	1 cut(s)	845
SduI	GDGCHC	1 cut(s)	46
SfaNI	GCATC	2 cut(s)	88, 266
SfcI	CTRYAG	2 cut(s)	379, 1358
SinI	GGWCC	2 cut(s)	905, 962
SmlI	CTYRAG	6 cut(s)	45, 359, 510, 533, 866, 1047
SmoI	CTYRAG	6 cut(s)	45, 359, 510, 533, 866, 1047
SphI	GCATGC	1 cut(s)	678
Sse9I	AATT	6 cut(s)	178, 186, 418, 448, 735, 1277
SseBI	AGGCCT	1 cut(s)	90
SsiI	CCGC	5 cut(s)	480, 1125, 1156, 1212, 1333
SspMI	CTAG	1 cut(s)	705
SstI	GAGCTC	1 cut(s)	46
StuI	AGGCCT	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	843
StyI	CCWWGG	1 cut(s)	328
TaaI	ACNGT	4 cut(s)	218, 403, 899, 1362
TaiI	ACGT	3 cut(s)	798, 1152, 1302
TaqI	TCGA	1 cut(s)	63
TaqII	GACCGA	2 cut(s)	893, 1316
TasI	AATT	6 cut(s)	178, 186, 418, 448, 735, 1277
TatI	WGTACW	1 cut(s)	537
TauI	GCSGC	2 cut(s)	1127, 1214
TfiI	GAWTC	1 cut(s)	408
Tru1I	TTAA	5 cut(s)	240, 345, 692, 792, 933
Tru9I	TTAA	5 cut(s)	240, 345, 692, 792, 933
TscAI	CASTG	2 cut(s)	489, 791
TseI	GCWGC	2 cut(s)	443, 947
TspDTI	ATGAA	6 cut(s)	118, 258, 507, 764, 1002, 1240
TspGWI	ACGGA	2 cut(s)	907, 1156
TspRI	CASTG	2 cut(s)	489, 791
VpaK11BI	GGWCC	2 cut(s)	905, 962
XapI	RAATTY	3 cut(s)	178, 186, 1277
XceI	RCATGY	2 cut(s)	168, 678
XcmI	CCANNNNNNNNNTGG	1 cut(s)	481
XmnI	GAANNNNTTC	1 cut(s)	374
XspI	CTAG	1 cut(s)	705
ZraI	GACGTC	1 cut(s)	1150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.