Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006926

Physical Location & Seq

Genomic Coordinates Forward (+)

14507470 .. 14509209

Gene Structure 1740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g18390.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGAAGAGTTCATGGATCTCAAACTTGTTGGGCATGCAGACTCGCATGAATCTAACAAATACGACCGAGCCAAAGAGCTAAAAGCTTTCGATGATACGATGGCTGGTGTCAAAGGCCTAGTAGATGCTGGCACAGTTCAAGTACCCAAGATATTCATAGAGCCACCCAACGATCTCACCCATTTTACCACGTGTCACCAACCCAACCTGCTAATTCCTGTCATTGATCTCAGTGGCATCAATGGTAGTGATGAGATCCACAAGCAGATTGTAGATGATGTTCGGACTGCGTCCGAAACATGGGGATTCTTCCAAGTGGTCAATCATGGAGTCCCACTGAGTGTGCTGGAAAATATGATCCAAGGAATAGTTGAGTTTCATGAGCAGGATCTTGATGCGAAGAAAGAGTTCTATTCCCGTGATCTAGGGAGAACCGTCCATTTCCTTAGCAACTATGATCTGTACCAATCAAAAGCAGCTAATTGGAGGGATACTTTGTCCTTTACCAGGTCTGCTGTTGATCATGATCCCAAACAGCTTCCTTCAGTCTGTAGATGCAACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

189

Amino Acids

21.27

Weight (kDa)

5.15

Isoelectric Point (pI)

31.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006926)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03310
malus_domestica	MD05G1014300.v1.1 MD13G1212100.v1.1
prunus_persica	Prupe.1G037000_v2.0.a1 Prupe.1G037000_v2.0.a1 Prupe.1G037000_v2.0.a1
pyrus_communis	pycom13g18390 pycom16g18030
rosa_chinensis	RchiOBHm_Chr4g0392321 RchiOBHm_Chr4g0392351
rosa_laevigata	RLG00000009818
rosa_multiflora	Rmu_sc0001231.1_g000012 Rmu_sc0001231.1_g000019
rosa_roxburghii	Rroxscaffold_5G00337490 Rroxscaffold_5G00337530
rosa_rugosa	Rorug03G0338300
rosa_samantha	Rh4AG041700 Rh4AG042000 Rh4BG036600 Rh4BG036900 Rh4CG044300 Rh4CG044600 Rh4CG044800 Rh4DG039000
rosa_wichuraiana	Rw4G003230 Rw4G003250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	216
AclWI	GGATC	5 cut(s)	24, 250, 352, 396, 521
AcuI	CTGAAG	1 cut(s)	528
AcvI	CACGTG	1 cut(s)	192
AdeI	CACNNNGTG	1 cut(s)	341
AfaI	GTAC	2 cut(s)	144, 464
AfiI	CCNNNNNNNGG	2 cut(s)	300, 507
AflIII	ACRYGT	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	140
AjnI	CCWGG	1 cut(s)	506
AluBI	AGCT	4 cut(s)	79, 86, 479, 538
AluI	AGCT	4 cut(s)	79, 86, 479, 538
AlwI	GGATC	5 cut(s)	24, 250, 352, 396, 521
AoxI	GGCC	1 cut(s)	115
ApeKI	GCWGC	1 cut(s)	476
Asp700I	GAANNNNTTC	1 cut(s)	407
AsuHPI	GGTGA	2 cut(s)	169, 188
BbrPI	CACGTG	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	488
BccI	CCATC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	508
BciVI	GTATCC	1 cut(s)	484
BclI	TGATCA	1 cut(s)	520
BfaI	CTAG	2 cut(s)	119, 425
BfmI	CTRYAG	1 cut(s)	550
BfuAI	ACCTGC	1 cut(s)	216
BfuI	GTATCC	1 cut(s)	484
BisI	GCNGC	1 cut(s)	477
BlsI	GCNGC	1 cut(s)	478
Bme1390I	CCNGG	1 cut(s)	508
BmrFI	CCNGG	1 cut(s)	508
BmsI	GCATC	4 cut(s)	115, 246, 385, 545
Bpu10I	CCTNAGC	1 cut(s)	446
BsaAI	YACGTR	1 cut(s)	192
BsaBI	GATNNNNATC	1 cut(s)	525
BsaJI	CCNNGG	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	2 cut(s)	300, 507
Bse8I	GATNNNNATC	1 cut(s)	525
BseBI	CCWGG	1 cut(s)	508
BseDI	CCNNGG	1 cut(s)	361
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	2 cut(s)	300, 507
BseMII	CTCAG	2 cut(s)	244, 329
BseXI	GCAGC	1 cut(s)	488
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	1 cut(s)	117
BsiEI	CGRYCG	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	2 cut(s)	300, 507
BsmFI	GGGAC	1 cut(s)	317
BsnI	GGCC	1 cut(s)	117
BspANI	GGCC	1 cut(s)	117
BspCNI	CTCAG	2 cut(s)	243, 330
BspHI	TCATGA	2 cut(s)	379, 523
BspMI	ACCTGC	1 cut(s)	216
BspPI	GGATC	5 cut(s)	24, 250, 352, 396, 521
BssECI	CCNNGG	1 cut(s)	361
BssT1I	CCWWGG	1 cut(s)	361
Bst2UI	CCWGG	1 cut(s)	508
Bst4CI	ACNGT	2 cut(s)	136, 436
BstBAI	YACGTR	1 cut(s)	192
BstC8I	GCNNGC	2 cut(s)	36, 130
BstDEI	CTNAG	3 cut(s)	230, 338, 446
BstENI	CCTNNNNNAGG	1 cut(s)	505
BstMCI	CGRYCG	1 cut(s)	67
BstNI	CCWGG	1 cut(s)	508
BstNSI	RCATGY	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	506
BstSFI	CTRYAG	1 cut(s)	550
BstV1I	GCAGC	1 cut(s)	488
BstX2I	RGATCY	3 cut(s)	16, 255, 388
BstYI	RGATCY	3 cut(s)	16, 255, 388
BsuI	GTATCC	1 cut(s)	484
BsuRI	GGCC	1 cut(s)	117
BtsIMutI	CAGTG	2 cut(s)	238, 335
BveI	ACCTGC	1 cut(s)	216
Cac8I	GCNNGC	2 cut(s)	36, 130
CciI	TCATGA	2 cut(s)	379, 523
CseI	GACGC	1 cut(s)	279
CsiI	ACCWGGT	1 cut(s)	506
Csp6I	GTAC	2 cut(s)	143, 463
CviAII	CATG	7 cut(s)	13, 35, 47, 300, 326, 380, 524
CviJI	RGCY	8 cut(s)	71, 79, 86, 104, 117, 163, 479, 538
CviKI_1	RGCY	8 cut(s)	71, 79, 86, 104, 117, 163, 479, 538
CviQI	GTAC	2 cut(s)	143, 463
DdeI	CTNAG	3 cut(s)	230, 338, 446
DraIII	CACNNNGTG	1 cut(s)	341
Eco130I	CCWWGG	1 cut(s)	361
Eco147I	AGGCCT	1 cut(s)	117
Eco57I	CTGAAG	1 cut(s)	528
Eco72I	CACGTG	1 cut(s)	192
EcoNI	CCTNNNNNAGG	1 cut(s)	505
EcoRII	CCWGG	1 cut(s)	506
EcoT14I	CCWWGG	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	7 cut(s)	16, 38, 50, 303, 329, 383, 527
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	7 cut(s)	12, 34, 46, 299, 325, 379, 523
FbaI	TGATCA	1 cut(s)	520
Fnu4HI	GCNGC	1 cut(s)	477
Fsp4HI	GCNGC	1 cut(s)	477
FspBI	CTAG	2 cut(s)	119, 425
GluI	GCNGC	1 cut(s)	477
HaeIII	GGCC	1 cut(s)	117
HgaI	GACGC	1 cut(s)	279
Hin1II	CATG	7 cut(s)	16, 38, 50, 303, 329, 383, 527
HindIII	AAGCTT	1 cut(s)	84
HinfI	GANTC	4 cut(s)	41, 50, 306, 330
HphI	GGTGA	2 cut(s)	169, 188
Hpy188I	TCNGA	2 cut(s)	285, 295
Hpy188III	TCNNGA	3 cut(s)	380, 392, 524
HpyAV	CCTTC	1 cut(s)	552
HpyCH4III	ACNGT	2 cut(s)	136, 436
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	2 cut(s)	38, 558
HpyF3I	CTNAG	3 cut(s)	230, 338, 446
HpySE526I	ACGT	1 cut(s)	191
Hsp92II	CATG	7 cut(s)	16, 38, 50, 303, 329, 383, 527
Ksp22I	TGATCA	1 cut(s)	520
LpnPI	CCDG	8 cut(s)	90, 114, 221, 231, 332, 371, 493, 520
Lsp1109I	GCAGC	1 cut(s)	488
LweI	GCATC	4 cut(s)	115, 246, 385, 545
MabI	ACCWGGT	1 cut(s)	506
MaeI	CTAG	2 cut(s)	119, 425
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	1 cut(s)	194
MboII	GAAGA	3 cut(s)	17, 301, 412
MfeI	CAATTG	1 cut(s)	562
MflI	RGATCY	3 cut(s)	16, 255, 388
MluCI	AATT	3 cut(s)	213, 481, 562
MlyI	GAGTC	2 cut(s)	35, 339
MnlI	CCTC	1 cut(s)	480
MroXI	GAANNNNTTC	1 cut(s)	407
MspR9I	CCNGG	1 cut(s)	508
MunI	CAATTG	1 cut(s)	562
MvaI	CCWGG	1 cut(s)	508
NlaIII	CATG	7 cut(s)	16, 38, 50, 303, 329, 383, 527
NmuCI	GTSAC	1 cut(s)	194
NspI	RCATGY	1 cut(s)	38
PaeI	GCATGC	1 cut(s)	38
PagI	TCATGA	2 cut(s)	379, 523
PceI	AGGCCT	1 cut(s)	117
PdmI	GAANNNNTTC	1 cut(s)	407
PfeI	GAWTC	2 cut(s)	50, 306
PflFI	GACNNNGTC	1 cut(s)	289
PkrI	GCNGC	1 cut(s)	478
PleI	GAGTC	2 cut(s)	35, 338
PmaCI	CACGTG	1 cut(s)	192
PmlI	CACGTG	1 cut(s)	192
PpsI	GAGTC	2 cut(s)	35, 338
Ppu21I	YACGTR	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	506
PspCI	CACGTG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	506
PsrI	GAACNNNNNNTAC	2 cut(s)	264, 296
PsuI	RGATCY	3 cut(s)	16, 255, 388
PsyI	GACNNNGTC	1 cut(s)	289
RsaI	GTAC	2 cut(s)	144, 464
RsaNI	GTAC	2 cut(s)	143, 463
SatI	GCNGC	1 cut(s)	477
SchI	GAGTC	2 cut(s)	35, 339
ScrFI	CCNGG	1 cut(s)	508
SetI	ASST	7 cut(s)	81, 88, 194, 210, 481, 512, 540
SexAI	ACCWGGT	1 cut(s)	506
SfaNI	GCATC	4 cut(s)	115, 246, 385, 545
SfcI	CTRYAG	1 cut(s)	550
SphI	GCATGC	1 cut(s)	38
Sse9I	AATT	3 cut(s)	213, 481, 562
SseBI	AGGCCT	1 cut(s)	117
SspMI	CTAG	2 cut(s)	119, 425
StuI	AGGCCT	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	506
StyI	CCWWGG	1 cut(s)	361
TaaI	ACNGT	2 cut(s)	136, 436
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	1 cut(s)	90
TaqII	GACCGA	1 cut(s)	81
TasI	AATT	3 cut(s)	213, 481, 562
TfiI	GAWTC	2 cut(s)	50, 306
TscAI	CASTG	2 cut(s)	238, 342
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	1 cut(s)	476
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	3 cut(s)	63, 145, 368
TspRI	CASTG	2 cut(s)	238, 342
Tth111I	GACNNNGTC	1 cut(s)	289
XagI	CCTNNNNNAGG	1 cut(s)	505
XceI	RCATGY	1 cut(s)	38
XmnI	GAANNNNTTC	1 cut(s)	407
XspI	CTAG	2 cut(s)	119, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.