Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006926

Physical Location & Seq

Genomic Coordinates Forward (+)

7744881 .. 7747538

Gene Structure 2658 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36508

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCTTGTACTGTAACAACTAAATATATAGGCGAAACTCAATCTGCTGAATACAACCGAGCTCAAGAGGTAAAGAGTTTCGATGATACAAAGGCTGGAGTCAAAGGCCTTGTAGATGCAGGCATAGGCAAAGTCCCAAAGATATTCATAGCACCATCTAATGATCATGCTGATTTTCCAACATGTCAGCAACCAAATTTGCAAATTCCTGTCATAAATCTCGGTGGCCTCTACGGTGATCGCCACAAGGAGATTGTTAATGAAGTTCGGATTGCATCCGAGACATGGGGTTTCTTCCAAGTGGTCAATCATGGAGTTCCATTGAATGTGCTTGAAGATATGATCCAAGGCGTAAGGAGGTTTAATGAGCAAGATCTTGAGGCGAAGAAAGAGTTCTATAGTCGTGATCTAAAGAGAACTGTGAGATTCAATAGCAATTACGATCTCTACCAGTCAAAAGCAGCTAATTGGAGGGACACTTTGGCTTTTACCAAGCCCGCAGTTGATCATGAACCCCAAGAACTCCCTCAAGTTTGTAGAGAAGTAGCACTTGAGTACACAAACCATGTCATAGAGTTGGCAGATCAACTCTTTGGATTATTATCAGAGGCTCTGGAACTCAAACCGGATTACCTAACAAGCAAGCATTCAGATCCAGCGTTTCTCACAATCCTTCTTCAAGACAAAATCGGTGGCCTTCAAGTCCTTCATGACAATCAGTGGGTTAACGTTGAACCCATTTCAGGAGGCTTAGTAATAAACATAGGGGACTTTCTCCAGGCTATATCAAATGACAGGCTCAAGAGTGTTCAACATAGAGTGCTCACCAACTGTGTCGGTCCACGAGTTTCTGTAGCTTATTTTTTTAAAGGAGAGACTGCTGCCAAGTCTTATGGTCCGATCAAAGAGCTTATATCAGATGAAAACCCTCCTCTGTACAAGGATTTCTCCATAGATGAGTACCATGGCAAGTTCTTTTCTCAAGGGCTTGATGAGAGGTCTGGACTTGACCAGTTCAAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

341

Amino Acids

38.41

Weight (kDa)

5.35

Isoelectric Point (pI)

30.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	69 - 172	2e-18	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	209 - 289	2.5e-23	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006926)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03310
malus_domestica	MD05G1014300.v1.1 MD13G1212100.v1.1
prunus_persica	Prupe.1G037000_v2.0.a1 Prupe.1G037000_v2.0.a1 Prupe.1G037000_v2.0.a1
pyrus_communis	pycom13g18390 pycom16g18030
rosa_chinensis	RchiOBHm_Chr4g0392321 RchiOBHm_Chr4g0392351
rosa_laevigata	RLG00000009818
rosa_multiflora	Rmu_sc0001231.1_g000012 Rmu_sc0001231.1_g000019
rosa_roxburghii	Rroxscaffold_5G00337490 Rroxscaffold_5G00337530
rosa_rugosa	Rorug03G0338300
rosa_samantha	Rh4AG041700 Rh4AG042000 Rh4BG036600 Rh4BG036900 Rh4CG044300 Rh4CG044600 Rh4CG044800 Rh4DG039000
rosa_wichuraiana	Rw4G003230 Rw4G003250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	498
AclI	AACGTT	1 cut(s)	729
AclWI	GGATC	2 cut(s)	337, 647
AcsI	RAATTY	2 cut(s)	196, 204
AfaI	GTAC	4 cut(s)	10, 557, 938, 962
AfiI	CCNNNNNNNGG	2 cut(s)	285, 743
AflIII	ACRYGT	1 cut(s)	182
AgsI	TTSAA	8 cut(s)	325, 335, 430, 680, 701, 734, 812, 1018
AjnI	CCWGG	1 cut(s)	777
AluBI	AGCT	5 cut(s)	62, 464, 857, 910, 1021
AluI	AGCT	5 cut(s)	62, 464, 857, 910, 1021
Alw21I	GWGCWC	2 cut(s)	64, 825
Alw26I	GTCTC	2 cut(s)	275, 869
AlwI	GGATC	2 cut(s)	337, 647
AoxI	GGCC	3 cut(s)	106, 226, 694
ApeKI	GCWGC	2 cut(s)	461, 881
ApoI	RAATTY	2 cut(s)	196, 204
Asp700I	GAANNNNTTC	1 cut(s)	392
AspS9I	GGNCC	2 cut(s)	839, 896
AsuHPI	GGTGA	2 cut(s)	248, 817
AvaII	GGWCC	2 cut(s)	839, 896
BanII	GRGCYC	1 cut(s)	64
BauI	CACGAG	1 cut(s)	843
Bbv12I	GWGCWC	2 cut(s)	64, 825
BbvI	GCAGC	2 cut(s)	473, 868
BccI	CCATC	1 cut(s)	163
BciT130I	CCWGG	1 cut(s)	779
BclI	TGATCA	2 cut(s)	163, 505
BcoDI	GTCTC	2 cut(s)	275, 869
BfmI	CTRYAG	2 cut(s)	397, 852
BglII	AGATCT	1 cut(s)	373
BisI	GCNGC	2 cut(s)	462, 882
BlsI	GCNGC	2 cut(s)	463, 883
Bme1390I	CCNGG	1 cut(s)	779
Bme18I	GGWCC	2 cut(s)	839, 896
BmgT120I	GGNCC	2 cut(s)	839, 896
BmrFI	CCNGG	1 cut(s)	779
BmsI	GCATC	2 cut(s)	106, 284
BpmI	CTGGAG	2 cut(s)	117, 761
BpuEI	CTTGAG	6 cut(s)	48, 398, 513, 572, 785, 966
BsaBI	GATNNNNATC	1 cut(s)	601
BsaJI	CCNNGG	2 cut(s)	346, 964
BsaWI	WCCGGW	1 cut(s)	625
BsaXI	ACNNNNNCTCC	2 cut(s)	738, 768
Bsc4I	CCNNNNNNNGG	2 cut(s)	285, 743
Bse1I	ACTGG	2 cut(s)	451, 1012
Bse8I	GATNNNNATC	1 cut(s)	601
BseBI	CCWGG	1 cut(s)	779
BseDI	CCNNGG	2 cut(s)	346, 964
BseGI	GGATG	1 cut(s)	275
BseJI	GATNNNNATC	1 cut(s)	601
BseLI	CCNNNNNNNGG	2 cut(s)	285, 743
BseNI	ACTGG	2 cut(s)	451, 1012
BseRI	GAGGAG	1 cut(s)	921
BseXI	GCAGC	2 cut(s)	473, 868
BshFI	GGCC	3 cut(s)	108, 228, 696
BsiHKAI	GWGCWC	2 cut(s)	64, 825
BsiSI	CCGG	1 cut(s)	626
BslFI	GGGAC	3 cut(s)	119, 488, 782
BslI	CCNNNNNNNGG	2 cut(s)	285, 743
BsmAI	GTCTC	2 cut(s)	275, 869
BsmFI	GGGAC	3 cut(s)	119, 488, 782
BsmI	GAATGC	1 cut(s)	646
BsnI	GGCC	3 cut(s)	108, 228, 696
Bsp1286I	GDGCHC	2 cut(s)	64, 825
Bsp1407I	TGTACA	1 cut(s)	936
Bsp19I	CCATGG	1 cut(s)	964
BspACI	CCGC	1 cut(s)	498
BspANI	GGCC	3 cut(s)	108, 228, 696
BspHI	TCATGA	2 cut(s)	508, 709
BspPI	GGATC	2 cut(s)	337, 647
BsrGI	TGTACA	1 cut(s)	936
BsrI	ACTGG	2 cut(s)	451, 1012
BssECI	CCNNGG	2 cut(s)	346, 964
BssSI	CACGAG	1 cut(s)	843
BssT1I	CCWWGG	2 cut(s)	346, 964
Bst2BI	CACGAG	1 cut(s)	843
Bst2UI	CCWGG	1 cut(s)	779
Bst4CI	ACNGT	4 cut(s)	13, 236, 421, 833
BstAUI	TGTACA	1 cut(s)	936
BstC8I	GCNNGC	3 cut(s)	121, 498, 644
BstDEI	CTNAG	1 cut(s)	751
BstDSI	CCRYGG	1 cut(s)	964
BstF5I	GGATG	1 cut(s)	275
BstMAI	GTCTC	2 cut(s)	275, 869
BstNI	CCWGG	1 cut(s)	779
BstNSI	RCATGY	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	777
BstSFI	CTRYAG	2 cut(s)	397, 852
BstV1I	GCAGC	2 cut(s)	473, 868
BstX2I	RGATCY	2 cut(s)	373, 652
BstYI	RGATCY	2 cut(s)	373, 652
BsuRI	GGCC	3 cut(s)	108, 228, 696
BtgI	CCRYGG	1 cut(s)	964
BtsCI	GGATG	1 cut(s)	275
BtsIMutI	CAGTG	1 cut(s)	725
Cac8I	GCNNGC	3 cut(s)	121, 498, 644
CciI	TCATGA	2 cut(s)	508, 709
Cfr13I	GGNCC	2 cut(s)	839, 896
Csp6I	GTAC	4 cut(s)	9, 556, 937, 961
CspCI	CAANNNNNGTGG	2 cut(s)	673, 708
CviAII	CATG	8 cut(s)	167, 183, 285, 311, 509, 566, 710, 965
CviQI	GTAC	4 cut(s)	9, 556, 937, 961
DdeI	CTNAG	1 cut(s)	751
DraI	TTTAAA	1 cut(s)	868
Ecl136II	GAGCTC	1 cut(s)	62
Eco130I	CCWWGG	2 cut(s)	346, 964
Eco147I	AGGCCT	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	64
Eco47I	GGWCC	2 cut(s)	839, 896
Eco53kI	GAGCTC	1 cut(s)	62
EcoICRI	GAGCTC	1 cut(s)	62
EcoRII	CCWGG	1 cut(s)	777
EcoT14I	CCWWGG	2 cut(s)	346, 964
EcoT38I	GRGCYC	1 cut(s)	64
ErhI	CCWWGG	2 cut(s)	346, 964
FaeI	CATG	8 cut(s)	170, 186, 288, 314, 512, 569, 713, 968
FalI	AAGNNNNNCTT	2 cut(s)	534, 566
FaqI	GGGAC	3 cut(s)	119, 488, 782
FatI	CATG	8 cut(s)	166, 182, 284, 310, 508, 565, 709, 964
FauI	CCCGC	1 cut(s)	505
FbaI	TGATCA	2 cut(s)	163, 505
Fnu4HI	GCNGC	2 cut(s)	462, 882
FokI	GGATG	1 cut(s)	262
FriOI	GRGCYC	1 cut(s)	64
Fsp4HI	GCNGC	2 cut(s)	462, 882
GluI	GCNGC	2 cut(s)	462, 882
GsuI	CTGGAG	2 cut(s)	117, 761
HaeIII	GGCC	3 cut(s)	108, 228, 696
HapII	CCGG	1 cut(s)	626
Hin1II	CATG	8 cut(s)	170, 186, 288, 314, 512, 569, 713, 968
HincII	GTYRAC	1 cut(s)	727
HindII	GTYRAC	1 cut(s)	727
HinfI	GANTC	2 cut(s)	99, 426
HpaI	GTTAAC	1 cut(s)	727
HpaII	CCGG	1 cut(s)	626
HphI	GGTGA	2 cut(s)	248, 817
Hpy166II	GTNNAC	3 cut(s)	558, 727, 842
Hpy188I	TCNGA	6 cut(s)	270, 280, 607, 652, 900, 919
Hpy8I	GTNNAC	3 cut(s)	558, 727, 842
HpyAV	CCTTC	3 cut(s)	683, 707, 716
HpyCH4III	ACNGT	4 cut(s)	13, 236, 421, 833
HpyCH4IV	ACGT	1 cut(s)	729
HpyCH4V	TGCA	3 cut(s)	119, 202, 275
HpyF3I	CTNAG	1 cut(s)	751
HpySE526I	ACGT	1 cut(s)	729
Hsp92II	CATG	8 cut(s)	170, 186, 288, 314, 512, 569, 713, 968
Ksp22I	TGATCA	2 cut(s)	163, 505
KspAI	GTTAAC	1 cut(s)	727
Lsp1109I	GCAGC	2 cut(s)	473, 868
LweI	GCATC	2 cut(s)	106, 284
MaeII	ACGT	1 cut(s)	729
MaeIII	GTNAC	1 cut(s)	13
MboII	GAAGA	4 cut(s)	286, 347, 397, 668
MflI	RGATCY	2 cut(s)	373, 652
MhlI	GDGCHC	2 cut(s)	64, 825
MluCI	AATT	4 cut(s)	196, 204, 436, 466
MlyI	GAGTC	1 cut(s)	108
MmeI	TCCRAC	1 cut(s)	203
MroXI	GAANNNNTTC	1 cut(s)	392
MseI	TTAA	4 cut(s)	258, 363, 726, 867
MspI	CCGG	1 cut(s)	626
MspR9I	CCNGG	1 cut(s)	779
Mva1269I	GAATGC	1 cut(s)	646
MvaI	CCWGG	1 cut(s)	779
NcoI	CCATGG	1 cut(s)	964
NlaIII	CATG	8 cut(s)	170, 186, 288, 314, 512, 569, 713, 968
NspI	RCATGY	1 cut(s)	186
PagI	TCATGA	2 cut(s)	508, 709
PceI	AGGCCT	1 cut(s)	108
PciI	ACATGT	1 cut(s)	182
PctI	GAATGC	1 cut(s)	646
PdmI	GAANNNNTTC	1 cut(s)	392
PfeI	GAWTC	1 cut(s)	426
PkrI	GCNGC	2 cut(s)	463, 883
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
PscI	ACATGT	1 cut(s)	182
Psp124BI	GAGCTC	1 cut(s)	64
Psp1406I	AACGTT	1 cut(s)	729
Psp6I	CCWGG	1 cut(s)	777
PspGI	CCWGG	1 cut(s)	777
PspPI	GGNCC	2 cut(s)	839, 896
PsuI	RGATCY	2 cut(s)	373, 652
RsaI	GTAC	4 cut(s)	10, 557, 938, 962
RsaNI	GTAC	4 cut(s)	9, 556, 937, 961
SacI	GAGCTC	1 cut(s)	64
SaqAI	TTAA	4 cut(s)	258, 363, 726, 867
SatI	GCNGC	2 cut(s)	462, 882
Sau96I	GGNCC	2 cut(s)	839, 896
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	1 cut(s)	779
SduI	GDGCHC	2 cut(s)	64, 825
SfaNI	GCATC	2 cut(s)	106, 284
SfcI	CTRYAG	2 cut(s)	397, 852
SinI	GGWCC	2 cut(s)	839, 896
SmlI	CTYRAG	6 cut(s)	63, 377, 528, 551, 800, 981
SmoI	CTYRAG	6 cut(s)	63, 377, 528, 551, 800, 981
Sse9I	AATT	4 cut(s)	196, 204, 436, 466
SseBI	AGGCCT	1 cut(s)	108
SsiI	CCGC	1 cut(s)	498
SstI	GAGCTC	1 cut(s)	64
StuI	AGGCCT	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	777
StyI	CCWWGG	2 cut(s)	346, 964
TaaI	ACNGT	4 cut(s)	13, 236, 421, 833
TaiI	ACGT	1 cut(s)	732
TaqI	TCGA	1 cut(s)	81
TaqII	GACCGA	1 cut(s)	827
TasI	AATT	4 cut(s)	196, 204, 436, 466
TatI	WGTACW	3 cut(s)	8, 555, 936
TfiI	GAWTC	1 cut(s)	426
Tru1I	TTAA	4 cut(s)	258, 363, 726, 867
Tru9I	TTAA	4 cut(s)	258, 363, 726, 867
TscAI	CASTG	1 cut(s)	725
TseI	GCWGC	2 cut(s)	461, 881
TspDTI	ATGAA	5 cut(s)	136, 276, 525, 698, 936
TspRI	CASTG	1 cut(s)	725
VpaK11BI	GGWCC	2 cut(s)	839, 896
XapI	RAATTY	2 cut(s)	196, 204
XceI	RCATGY	1 cut(s)	186
XmnI	GAANNNNTTC	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.