Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001231.1

Orthogroup ID

OG0006926

Physical Location & Seq

Genomic Coordinates Reverse (-)

61802 .. 63542

Gene Structure 1741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001231.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

atgctccttgcgtttgccatacgcaagactttttctgaaaacaattggtggcttgtgcgcttgcgtggcttaatgttagcctcctcacagctgaatctgcatacaattatccttgcctataagtgcttgagctatcaaacaccttcaatccttgtactgattactgaacatgtcatggaagtctcaggcgaaactcaatctgctgaatacaaccgagctcaagaggtaaagagtttcgatgatacaaaggctggagtcaaaggccttgtagatgcaggcataggcaaagtcccaaagatattcatagcaccatctaatgatcatgctgattttccaacatgtcagcaaccaaatttgcaaattcctgtcataaatctcggtggcctctacggtgatcgccacaaggagattgttaatgaagttcggattgcatccgagacgtggggtttcttccaagtggtcaatcatggagttccactgaatgtgcttgaagatatgatccaaggcgtaaggaggtttaatgagcaagatcttgaggcgaagaaagagttctatagtcgtgatctaatgagaactgtgagattcaacagcaattacgatctctaccagtcaaaagcagctaattggagggacactttggcttttaccaagcccgcagttgatcatgaaccccaagaactccctcaagtttgtagagaagtagcacttgagtacacaaaccatgtcatagagttggcagatcaactctttggattgttatcagtggctctggaactcaaaccggattacctaacaagggaaatggagtgtgctaagttttatacctgtgtctgccactactatccagcatgccctgaaccagagctaactttgggaactagcaagcattcagatccagcgttcctcacaattcttcttcaagacaaaatcggtggccttcaagtccttcatgacaatcagtgggttaacgttgaccccatttcaggaggcttagtaataaacataggggactttctccaggctatatcaaatgacaggctcaagagtgctcaacatagggtgctcaccaaccgtgtcggtccacgagtttccgtagcttatttttttaaaggagagactgctgccaagtcttatggtccgatcaaggagcttatatcagatgaaaaccctcctctctacaaggatttctccatagatgagtaccatggcaagttcttttctcaagggcttgatgagaggtctggacttgagcagttcaagctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

421

Amino Acids

47.69

Weight (kDa)

5.6

Isoelectric Point (pI)

34.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006926)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03310
malus_domestica	MD05G1014300.v1.1 MD13G1212100.v1.1
prunus_persica	Prupe.1G037000_v2.0.a1 Prupe.1G037000_v2.0.a1 Prupe.1G037000_v2.0.a1
pyrus_communis	pycom13g18390 pycom16g18030
rosa_chinensis	RchiOBHm_Chr4g0392321 RchiOBHm_Chr4g0392351
rosa_laevigata	RLG00000009818
rosa_multiflora	Rmu_sc0001231.1_g000012 Rmu_sc0001231.1_g000019
rosa_roxburghii	Rroxscaffold_5G00337490 Rroxscaffold_5G00337530
rosa_rugosa	Rorug03G0338300
rosa_samantha	Rh4AG041700 Rh4AG042000 Rh4BG036600 Rh4BG036900 Rh4CG044300 Rh4CG044600 Rh4CG044800 Rh4DG039000
rosa_wichuraiana	Rw4G003230 Rw4G003250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	654
AclI	AACGTT	1 cut(s)	969
AclWI	GGATC	2 cut(s)	493, 887
AcsI	RAATTY	2 cut(s)	352, 360
AfaI	GTAC	3 cut(s)	156, 713, 1202
AfiI	CCNNNNNNNGG	3 cut(s)	441, 796, 983
AflIII	ACRYGT	2 cut(s)	169, 338
AgsI	TTSAA	6 cut(s)	147, 491, 586, 920, 941, 1258
AjiI	CACGTC	1 cut(s)	441
AjnI	CCWGG	1 cut(s)	1017
AluBI	AGCT	8 cut(s)	91, 132, 218, 620, 865, 1097, 1150, 1261
AluI	AGCT	8 cut(s)	91, 132, 218, 620, 865, 1097, 1150, 1261
Alw21I	GWGCWC	3 cut(s)	220, 1051, 1065
Alw26I	GTCTC	3 cut(s)	187, 431, 1109
AlwI	GGATC	2 cut(s)	493, 887
AoxI	GGCC	3 cut(s)	262, 382, 934
ApeKI	GCWGC	2 cut(s)	617, 1121
ApoI	RAATTY	2 cut(s)	352, 360
Asp700I	GAANNNNTTC	1 cut(s)	548
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	2 cut(s)	1079, 1136
AsuHPI	GGTGA	2 cut(s)	404, 1057
AvaII	GGWCC	2 cut(s)	1079, 1136
BanII	GRGCYC	1 cut(s)	220
BauI	CACGAG	1 cut(s)	1083
Bbv12I	GWGCWC	3 cut(s)	220, 1051, 1065
BbvI	GCAGC	2 cut(s)	629, 1108
BccI	CCATC	1 cut(s)	319
BciT130I	CCWGG	1 cut(s)	1019
BclI	TGATCA	2 cut(s)	319, 661
BcoDI	GTCTC	3 cut(s)	187, 431, 1109
BfaI	CTAG	1 cut(s)	879
BfmI	CTRYAG	1 cut(s)	553
BglII	AGATCT	1 cut(s)	529
BisI	GCNGC	2 cut(s)	618, 1122
BlsI	GCNGC	2 cut(s)	619, 1123
Bme1390I	CCNGG	1 cut(s)	1019
Bme18I	GGWCC	2 cut(s)	1079, 1136
BmgBI	CACGTC	1 cut(s)	441
BmgT120I	GGNCC	2 cut(s)	1079, 1136
BmrFI	CCNGG	1 cut(s)	1019
BmsI	GCATC	2 cut(s)	262, 440
BpmI	CTGGAG	2 cut(s)	273, 1001
BpuEI	CTTGAG	7 cut(s)	148, 204, 554, 669, 728, 1025, 1206
BsaBI	GATNNNNATC	1 cut(s)	757
BsaJI	CCNNGG	2 cut(s)	502, 1204
BsaWI	WCCGGW	1 cut(s)	781
BsaXI	ACNNNNNCTCC	2 cut(s)	978, 1008
Bsc4I	CCNNNNNNNGG	3 cut(s)	441, 796, 983
Bse1I	ACTGG	1 cut(s)	607
Bse8I	GATNNNNATC	1 cut(s)	757
BseBI	CCWGG	1 cut(s)	1019
BseDI	CCNNGG	2 cut(s)	502, 1204
BseGI	GGATG	1 cut(s)	431
BseJI	GATNNNNATC	1 cut(s)	757
BseLI	CCNNNNNNNGG	3 cut(s)	441, 796, 983
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	1 cut(s)	607
BseRI	GAGGAG	2 cut(s)	73, 1161
BseXI	GCAGC	2 cut(s)	629, 1108
BshFI	GGCC	3 cut(s)	264, 384, 936
BsiHKAI	GWGCWC	3 cut(s)	220, 1051, 1065
BsiSI	CCGG	1 cut(s)	782
BslFI	GGGAC	3 cut(s)	275, 644, 1022
BslI	CCNNNNNNNGG	3 cut(s)	441, 796, 983
BsmAI	GTCTC	3 cut(s)	187, 431, 1109
BsmBI	CGTCTC	1 cut(s)	431
BsmFI	GGGAC	3 cut(s)	275, 644, 1022
BsmI	GAATGC	1 cut(s)	886
BsnI	GGCC	3 cut(s)	264, 384, 936
Bsp1286I	GDGCHC	3 cut(s)	220, 1051, 1065
Bsp19I	CCATGG	1 cut(s)	1204
BspACI	CCGC	1 cut(s)	654
BspANI	GGCC	3 cut(s)	264, 384, 936
BspCNI	CTCAG	1 cut(s)	197
BspHI	TCATGA	2 cut(s)	664, 949
BspPI	GGATC	2 cut(s)	493, 887
BsrI	ACTGG	1 cut(s)	607
BssECI	CCNNGG	2 cut(s)	502, 1204
BssSI	CACGAG	1 cut(s)	1083
BssT1I	CCWWGG	2 cut(s)	502, 1204
Bst2BI	CACGAG	1 cut(s)	1083
Bst2UI	CCWGG	1 cut(s)	1019
Bst4CI	ACNGT	3 cut(s)	392, 577, 1073
BstC8I	GCNNGC	5 cut(s)	62, 277, 654, 850, 884
BstDEI	CTNAG	3 cut(s)	184, 813, 991
BstDSI	CCRYGG	1 cut(s)	1204
BstF5I	GGATG	1 cut(s)	431
BstHHI	GCGC	1 cut(s)	60
BstMAI	GTCTC	3 cut(s)	187, 431, 1109
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 97, 1258
BstNI	CCWGG	1 cut(s)	1019
BstNSI	RCATGY	3 cut(s)	173, 342, 852
BstSCI	CCNGG	1 cut(s)	1017
BstSFI	CTRYAG	1 cut(s)	553
BstV1I	GCAGC	2 cut(s)	629, 1108
BstX2I	RGATCY	2 cut(s)	529, 892
BstYI	RGATCY	2 cut(s)	529, 892
BsuRI	GGCC	3 cut(s)	264, 384, 936
BtgI	CCRYGG	1 cut(s)	1204
BtrI	CACGTC	1 cut(s)	441
BtsCI	GGATG	1 cut(s)	431
BtsIMutI	CAGTG	3 cut(s)	476, 768, 965
Cac8I	GCNNGC	5 cut(s)	62, 277, 654, 850, 884
CciI	TCATGA	2 cut(s)	664, 949
CfoI	GCGC	1 cut(s)	60
Cfr13I	GGNCC	2 cut(s)	1079, 1136
Csp6I	GTAC	3 cut(s)	155, 712, 1201
CspCI	CAANNNNNGTGG	2 cut(s)	913, 948
CviQI	GTAC	3 cut(s)	155, 712, 1201
DdeI	CTNAG	3 cut(s)	184, 813, 991
DraI	TTTAAA	1 cut(s)	1108
Ecl136II	GAGCTC	1 cut(s)	218
Eco130I	CCWWGG	2 cut(s)	502, 1204
Eco147I	AGGCCT	1 cut(s)	264
Eco24I	GRGCYC	1 cut(s)	220
Eco47I	GGWCC	2 cut(s)	1079, 1136
Eco53kI	GAGCTC	1 cut(s)	218
EcoICRI	GAGCTC	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	1017
EcoT14I	CCWWGG	2 cut(s)	502, 1204
EcoT38I	GRGCYC	1 cut(s)	220
ErhI	CCWWGG	2 cut(s)	502, 1204
Esp3I	CGTCTC	1 cut(s)	431
FalI	AAGNNNNNCTT	2 cut(s)	690, 722
FaqI	GGGAC	3 cut(s)	275, 644, 1022
FauI	CCCGC	1 cut(s)	661
FbaI	TGATCA	2 cut(s)	319, 661
Fnu4HI	GCNGC	2 cut(s)	618, 1122
FokI	GGATG	1 cut(s)	418
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	2 cut(s)	618, 1122
FspBI	CTAG	1 cut(s)	879
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	2 cut(s)	618, 1122
GsuI	CTGGAG	2 cut(s)	273, 1001
HaeIII	GGCC	3 cut(s)	264, 384, 936
HapII	CCGG	1 cut(s)	782
HhaI	GCGC	1 cut(s)	60
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HincII	GTYRAC	2 cut(s)	967, 973
HindII	GTYRAC	2 cut(s)	967, 973
HinfI	GANTC	3 cut(s)	94, 255, 582
HpaI	GTTAAC	1 cut(s)	967
HpaII	CCGG	1 cut(s)	782
HphI	GGTGA	2 cut(s)	404, 1057
Hpy166II	GTNNAC	4 cut(s)	714, 967, 973, 1082
Hpy188I	TCNGA	6 cut(s)	37, 426, 436, 892, 1140, 1159
Hpy8I	GTNNAC	4 cut(s)	714, 967, 973, 1082
HpyAV	CCTTC	3 cut(s)	153, 947, 956
HpyCH4III	ACNGT	3 cut(s)	392, 577, 1073
HpyCH4IV	ACGT	2 cut(s)	440, 969
HpyCH4V	TGCA	4 cut(s)	100, 275, 358, 431
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 97, 1258
HpyF3I	CTNAG	3 cut(s)	184, 813, 991
HpySE526I	ACGT	2 cut(s)	440, 969
HspAI	GCGC	1 cut(s)	58
Ksp22I	TGATCA	2 cut(s)	319, 661
KspAI	GTTAAC	1 cut(s)	967
LmnI	GCTCC	2 cut(s)	9, 1147
Lsp1109I	GCAGC	2 cut(s)	629, 1108
LweI	GCATC	2 cut(s)	262, 440
MaeI	CTAG	1 cut(s)	879
MaeII	ACGT	2 cut(s)	440, 969
MboII	GAAGA	5 cut(s)	442, 503, 553, 905, 908
MfeI	CAATTG	1 cut(s)	43
MflI	RGATCY	2 cut(s)	529, 892
MhlI	GDGCHC	3 cut(s)	220, 1051, 1065
MluCI	AATT	7 cut(s)	43, 105, 352, 360, 592, 622, 909
MlyI	GAGTC	1 cut(s)	264
MmeI	TCCRAC	1 cut(s)	359
MroXI	GAANNNNTTC	1 cut(s)	548
MseI	TTAA	5 cut(s)	71, 414, 519, 966, 1107
MspA1I	CMGCKG	1 cut(s)	91
MspI	CCGG	1 cut(s)	782
MspR9I	CCNGG	1 cut(s)	1019
MunI	CAATTG	1 cut(s)	43
Mva1269I	GAATGC	1 cut(s)	886
MvaI	CCWGG	1 cut(s)	1019
MwoI	GCNNNNNNNGC	3 cut(s)	66, 97, 1258
NcoI	CCATGG	1 cut(s)	1204
NspI	RCATGY	3 cut(s)	173, 342, 852
PaeI	GCATGC	1 cut(s)	852
PagI	TCATGA	2 cut(s)	664, 949
PceI	AGGCCT	1 cut(s)	264
PciI	ACATGT	2 cut(s)	169, 338
PctI	GAATGC	1 cut(s)	886
PdmI	GAANNNNTTC	1 cut(s)	548
PfeI	GAWTC	2 cut(s)	94, 582
PkrI	GCNGC	2 cut(s)	619, 1123
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
PscI	ACATGT	2 cut(s)	169, 338
Psp124BI	GAGCTC	1 cut(s)	220
Psp1406I	AACGTT	1 cut(s)	969
Psp6I	CCWGG	1 cut(s)	1017
PspGI	CCWGG	1 cut(s)	1017
PspPI	GGNCC	2 cut(s)	1079, 1136
PsuI	RGATCY	2 cut(s)	529, 892
PvuII	CAGCTG	1 cut(s)	91
RsaI	GTAC	3 cut(s)	156, 713, 1202
RsaNI	GTAC	3 cut(s)	155, 712, 1201
SacI	GAGCTC	1 cut(s)	220
SaqAI	TTAA	5 cut(s)	71, 414, 519, 966, 1107
SatI	GCNGC	2 cut(s)	618, 1122
Sau96I	GGNCC	2 cut(s)	1079, 1136
SchI	GAGTC	1 cut(s)	264
ScrFI	CCNGG	1 cut(s)	1019
SduI	GDGCHC	3 cut(s)	220, 1051, 1065
SfaNI	GCATC	2 cut(s)	262, 440
SfcI	CTRYAG	1 cut(s)	553
SinI	GGWCC	2 cut(s)	1079, 1136
SmlI	CTYRAG	8 cut(s)	127, 219, 533, 684, 707, 1040, 1221, 1247
SmoI	CTYRAG	8 cut(s)	127, 219, 533, 684, 707, 1040, 1221, 1247
SphI	GCATGC	1 cut(s)	852
Sse9I	AATT	7 cut(s)	43, 105, 352, 360, 592, 622, 909
SseBI	AGGCCT	1 cut(s)	264
SsiI	CCGC	1 cut(s)	654
SspMI	CTAG	1 cut(s)	879
SstI	GAGCTC	1 cut(s)	220
StuI	AGGCCT	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	1017
StyI	CCWWGG	2 cut(s)	502, 1204
TaaI	ACNGT	3 cut(s)	392, 577, 1073
TaiI	ACGT	2 cut(s)	443, 972
TaqI	TCGA	1 cut(s)	237
TaqII	GACCGA	1 cut(s)	1067
TasI	AATT	7 cut(s)	43, 105, 352, 360, 592, 622, 909
TatI	WGTACW	2 cut(s)	154, 711
TfiI	GAWTC	2 cut(s)	94, 582
Tru1I	TTAA	5 cut(s)	71, 414, 519, 966, 1107
Tru9I	TTAA	5 cut(s)	71, 414, 519, 966, 1107
TscAI	CASTG	3 cut(s)	483, 768, 965
TseI	GCWGC	2 cut(s)	617, 1121
TspDTI	ATGAA	5 cut(s)	292, 432, 681, 938, 1176
TspGWI	ACGGA	1 cut(s)	1081
TspRI	CASTG	3 cut(s)	483, 768, 965
VpaK11BI	GGWCC	2 cut(s)	1079, 1136
XapI	RAATTY	2 cut(s)	352, 360
XceI	RCATGY	3 cut(s)	173, 342, 852
XmnI	GAANNNNTTC	1 cut(s)	548
XspI	CTAG	1 cut(s)	879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.