Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0006926

Physical Location & Seq

Genomic Coordinates Forward (+)

19785509 .. 19789425

Gene Structure 3917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1212100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGGTATCAAACTTGTTGGGCATGCAGACTCGCATGAATCTGACAAATACGACCGAGCCAAAGAGCTAAAAGCTTTCGATGATACGATGGCTGGAGTCAAAGGCCTAGCAGATGCTGGCACAGTTCATGTACCCAAGATATTCATAGAGCCACCCAACGATCTCACCCAGTTTACCACGTGTCCCCAACCCAACCTGCTAATTCCTGTCATTGATCTCAGTGGCATCAATGGTAGTGATGAGATCCACAAGCAGATTGTAGATGATGTTCGGACTGCGTCCGAAACATGGGGATTCTTCCAAGTGGTCAATCATAGAGTCCCACTGAGTGTGCTGGAAAATATGATCCAAGGAATAGTTGGGTTTCATGAGCAGGATCTTGATGCGAAGAAAGAGTTCTATTCCCGTGATCTAGGGAGAACCGTCCGATTCAATAGCAACTATGATCTGTACCAGTCAAAAGCAGCTAATTGGAGGGATACTGTGTCTTTTACCAGGTCTGCTGTTGATCATGATCCCAAACAGCTTCCTTCAGTATGCAGAGATGCAACAATTGAGTACACAAACCATGTCATAAATTTGGGAGACCAACTTTTTGGAATATTATCAGAGGCTCTTGGACTCGAACCTGACCACCTAAGGGAATTAGAATGCGCTAAAGATTACAAGTTTGTGTGTCACTACTATCCACCATGCCCAAAACCAGAACTAACTTTGGGAGCCAGCAAGCACTCTGATCCTTCTTTCCTCACTATTCTTCTTCAAGACCAAATTGGTGGCCTTCAAGTCCTTCATGACAATCAATGGGTAAATGTGAACCCAATTTCAGGTGGCATAGTAGTAAATATAGGGGATTTTCTCCAGGCTATATCAAATAACAAGTTTCAGAGTGCTCAACATAGAGTGCTTGCGAACAGCATTGGTCCAAGAGTTTCCATAGCATGCTTCTTCGAAGGACAGAGTAATACTGATGCACCGGCCAAGTACTACGGTCCGATCAAAGAGCTTATATCAGAAGAAAACCCTCCTCTTTATAGAGATTTCTTGATAAGTGAATACTATGCAAAGTTCTATTCTGAAGGGCTTGATGAGAAGTCTGGTCTTGACCATTTCAGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

374

Amino Acids

41.81

Weight (kDa)

5.21

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	68 - 174	5e-17	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	224 - 318	1.3e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006926)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03310
malus_domestica	MD05G1014300.v1.1 MD13G1212100.v1.1
prunus_persica	Prupe.1G037000_v2.0.a1 Prupe.1G037000_v2.0.a1 Prupe.1G037000_v2.0.a1
pyrus_communis	pycom13g18390 pycom16g18030
rosa_chinensis	RchiOBHm_Chr4g0392321 RchiOBHm_Chr4g0392351
rosa_laevigata	RLG00000009818
rosa_multiflora	Rmu_sc0001231.1_g000012 Rmu_sc0001231.1_g000019
rosa_roxburghii	Rroxscaffold_5G00337490 Rroxscaffold_5G00337530
rosa_rugosa	Rorug03G0338300
rosa_samantha	Rh4AG041700 Rh4AG042000 Rh4BG036600 Rh4BG036900 Rh4CG044300 Rh4CG044600 Rh4CG044800 Rh4DG039000
rosa_wichuraiana	Rw4G003230 Rw4G003250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	204
AclWI	GGATC	5 cut(s)	238, 340, 384, 509, 731
AcoI	YGGCCR	1 cut(s)	978
AcsI	RAATTY	1 cut(s)	577
AcuI	CTGAAG	2 cut(s)	516, 1098
AcvI	CACGTG	1 cut(s)	180
AdeI	CACNNNGTG	1 cut(s)	329
AfaI	GTAC	4 cut(s)	132, 452, 560, 986
AfiI	CCNNNNNNNGG	3 cut(s)	288, 640, 827
AflIII	ACRYGT	1 cut(s)	179
AgsI	TTSAA	3 cut(s)	433, 764, 785
AjnI	CCWGG	2 cut(s)	494, 861
AluBI	AGCT	5 cut(s)	67, 74, 467, 526, 1006
AluI	AGCT	5 cut(s)	67, 74, 467, 526, 1006
Alw21I	GWGCWC	1 cut(s)	895
Alw26I	GTCTC	1 cut(s)	579
AlwI	GGATC	5 cut(s)	238, 340, 384, 509, 731
AlwNI	CAGNNNCTG	1 cut(s)	116
AoxI	GGCC	3 cut(s)	103, 778, 978
ApeKI	GCWGC	1 cut(s)	464
ApoI	RAATTY	1 cut(s)	577
ArsI	GACNNNNNNTTYG	2 cut(s)	578, 610
Asp700I	GAANNNNTTC	1 cut(s)	395
AspLEI	GCGC	1 cut(s)	656
AspS9I	GGNCC	2 cut(s)	923, 992
AsuHPI	GGTGA	1 cut(s)	157
AsuII	TTCGAA	1 cut(s)	951
AvaII	GGWCC	2 cut(s)	923, 992
AxyI	CCTNAGG	1 cut(s)	638
BbrPI	CACGTG	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	895
BbvI	GCAGC	1 cut(s)	476
BccI	CCATC	1 cut(s)	82
BciT130I	CCWGG	2 cut(s)	496, 863
BciVI	GTATCC	1 cut(s)	472
BclI	TGATCA	1 cut(s)	508
BcoDI	GTCTC	1 cut(s)	579
BfaI	CTAG	2 cut(s)	107, 413
BfuAI	ACCTGC	1 cut(s)	204
BfuI	GTATCC	1 cut(s)	472
BisI	GCNGC	1 cut(s)	465
BlsI	GCNGC	1 cut(s)	466
BmcAI	AGTACT	1 cut(s)	986
Bme1390I	CCNGG	2 cut(s)	496, 863
Bme18I	GGWCC	2 cut(s)	923, 992
BmgT120I	GGNCC	2 cut(s)	923, 992
BmiI	GGNNCC	1 cut(s)	721
BmrFI	CCNGG	2 cut(s)	496, 863
BmrI	ACTGGG	1 cut(s)	163
BmsI	GCATC	5 cut(s)	103, 234, 373, 535, 961
BmuI	ACTGGG	1 cut(s)	163
BpmI	CTGGAG	2 cut(s)	114, 845
Bpu14I	TTCGAA	1 cut(s)	951
BsaAI	YACGTR	1 cut(s)	180
BsaBI	GATNNNNATC	1 cut(s)	513
BsaI	GGTCTC	1 cut(s)	579
BsaJI	CCNNGG	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	3 cut(s)	288, 640, 827
Bse118I	RCCGGY	1 cut(s)	976
Bse1I	ACTGG	2 cut(s)	169, 454
Bse21I	CCTNAGG	1 cut(s)	638
Bse8I	GATNNNNATC	1 cut(s)	513
BseBI	CCWGG	2 cut(s)	496, 863
BseDI	CCNNGG	1 cut(s)	349
BseJI	GATNNNNATC	1 cut(s)	513
BseLI	CCNNNNNNNGG	3 cut(s)	288, 640, 827
BseMII	CTCAG	2 cut(s)	232, 317
BseNI	ACTGG	2 cut(s)	169, 454
BseRI	GAGGAG	1 cut(s)	1017
BseXI	GCAGC	1 cut(s)	476
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	3 cut(s)	105, 780, 980
BsiEI	CGRYCG	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	895
BsiSI	CCGG	1 cut(s)	977
BslFI	GGGAC	2 cut(s)	168, 305
BslI	CCNNNNNNNGG	3 cut(s)	288, 640, 827
BsmAI	GTCTC	1 cut(s)	579
BsmFI	GGGAC	2 cut(s)	168, 305
BsmI	GAATGC	1 cut(s)	656
BsnI	GGCC	3 cut(s)	105, 780, 980
Bso31I	GGTCTC	1 cut(s)	579
Bsp119I	TTCGAA	1 cut(s)	951
Bsp1286I	GDGCHC	1 cut(s)	895
BspANI	GGCC	3 cut(s)	105, 780, 980
BspCNI	CTCAG	2 cut(s)	231, 318
BspHI	TCATGA	3 cut(s)	367, 511, 793
BspLI	GGNNCC	1 cut(s)	721
BspMI	ACCTGC	1 cut(s)	204
BspPI	GGATC	5 cut(s)	238, 340, 384, 509, 731
BspT104I	TTCGAA	1 cut(s)	951
BspTNI	GGTCTC	1 cut(s)	579
BsrFI	RCCGGY	1 cut(s)	976
BsrI	ACTGG	2 cut(s)	169, 454
BssAI	RCCGGY	1 cut(s)	976
BssECI	CCNNGG	1 cut(s)	349
BssT1I	CCWWGG	1 cut(s)	349
Bst2UI	CCWGG	2 cut(s)	496, 863
Bst4CI	ACNGT	4 cut(s)	124, 424, 484, 992
BstBAI	YACGTR	1 cut(s)	180
BstBI	TTCGAA	1 cut(s)	951
BstC8I	GCNNGC	6 cut(s)	24, 118, 724, 728, 909, 943
BstDEI	CTNAG	3 cut(s)	218, 326, 638
BstHHI	GCGC	1 cut(s)	656
BstMAI	GTCTC	1 cut(s)	579
BstMCI	CGRYCG	1 cut(s)	55
BstNI	CCWGG	2 cut(s)	496, 863
BstNSI	RCATGY	2 cut(s)	26, 945
BstSCI	CCNGG	2 cut(s)	494, 861
BstV1I	GCAGC	1 cut(s)	476
BstX2I	RGATCY	2 cut(s)	243, 376
BstXI	CCANNNNNNTGG	2 cut(s)	596, 776
BstYI	RGATCY	2 cut(s)	243, 376
Bsu36I	CCTNAGG	1 cut(s)	638
BsuI	GTATCC	1 cut(s)	472
BsuRI	GGCC	3 cut(s)	105, 780, 980
BtsIMutI	CAGTG	2 cut(s)	226, 323
BveI	ACCTGC	1 cut(s)	204
Cac8I	GCNNGC	6 cut(s)	24, 118, 724, 728, 909, 943
CaiI	CAGNNNCTG	1 cut(s)	116
CciI	TCATGA	3 cut(s)	367, 511, 793
CfoI	GCGC	1 cut(s)	656
Cfr10I	RCCGGY	1 cut(s)	976
Cfr13I	GGNCC	2 cut(s)	923, 992
CpoI	CGGWCCG	1 cut(s)	992
CseI	GACGC	1 cut(s)	267
CsiI	ACCWGGT	1 cut(s)	494
Csp6I	GTAC	4 cut(s)	131, 451, 559, 985
CspI	CGGWCCG	1 cut(s)	992
CviQI	GTAC	4 cut(s)	131, 451, 559, 985
DdeI	CTNAG	3 cut(s)	218, 326, 638
DraIII	CACNNNGTG	1 cut(s)	329
EaeI	YGGCCR	1 cut(s)	978
Eco130I	CCWWGG	1 cut(s)	349
Eco147I	AGGCCT	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	579
Eco47I	GGWCC	2 cut(s)	923, 992
Eco57I	CTGAAG	2 cut(s)	516, 1098
Eco72I	CACGTG	1 cut(s)	180
Eco81I	CCTNAGG	1 cut(s)	638
EcoRII	CCWGG	2 cut(s)	494, 861
EcoT14I	CCWWGG	1 cut(s)	349
ErhI	CCWWGG	1 cut(s)	349
FaqI	GGGAC	2 cut(s)	168, 305
FbaI	TGATCA	1 cut(s)	508
Fnu4HI	GCNGC	1 cut(s)	465
Fsp4HI	GCNGC	1 cut(s)	465
FspBI	CTAG	2 cut(s)	107, 413
GlaI	GCGC	1 cut(s)	655
GluI	GCNGC	1 cut(s)	465
GsuI	CTGGAG	2 cut(s)	114, 845
HaeIII	GGCC	3 cut(s)	105, 780, 980
HapII	CCGG	1 cut(s)	977
HgaI	GACGC	1 cut(s)	267
HhaI	GCGC	1 cut(s)	656
Hin6I	GCGC	1 cut(s)	654
HinP1I	GCGC	1 cut(s)	654
HindIII	AAGCTT	1 cut(s)	72
HinfI	GANTC	7 cut(s)	29, 38, 96, 294, 318, 429, 621
HpaII	CCGG	1 cut(s)	977
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	3 cut(s)	174, 561, 817
Hpy188III	TCNNGA	7 cut(s)	368, 380, 512, 764, 794, 1045, 1103
Hpy8I	GTNNAC	3 cut(s)	174, 561, 817
HpyAV	CCTTC	6 cut(s)	540, 750, 791, 800, 947, 1073
HpyCH4III	ACNGT	4 cut(s)	124, 424, 484, 992
HpyCH4IV	ACGT	1 cut(s)	179
HpyCH4V	TGCA	5 cut(s)	26, 540, 548, 974, 1064
HpyF3I	CTNAG	3 cut(s)	218, 326, 638
HpySE526I	ACGT	1 cut(s)	179
HspAI	GCGC	1 cut(s)	654
Ksp22I	TGATCA	1 cut(s)	508
LmnI	GCTCC	1 cut(s)	719
Lsp1109I	GCAGC	1 cut(s)	476
LweI	GCATC	5 cut(s)	103, 234, 373, 535, 961
MabI	ACCWGGT	1 cut(s)	494
MaeI	CTAG	2 cut(s)	107, 413
MaeII	ACGT	1 cut(s)	179
MaeIII	GTNAC	1 cut(s)	677
MboII	GAAGA	6 cut(s)	289, 400, 749, 752, 940, 1028
MfeI	CAATTG	1 cut(s)	552
MflI	RGATCY	2 cut(s)	243, 376
MhlI	GDGCHC	1 cut(s)	895
MluCI	AATT	7 cut(s)	201, 469, 552, 577, 644, 771, 822
MlyI	GAGTC	4 cut(s)	23, 105, 327, 615
MnlI	CCTC	5 cut(s)	468, 604, 758, 1035, 1038
MroXI	GAANNNNTTC	1 cut(s)	395
MspI	CCGG	1 cut(s)	977
MspR9I	CCNGG	2 cut(s)	496, 863
MunI	CAATTG	1 cut(s)	552
Mva1269I	GAATGC	1 cut(s)	656
MvaI	CCWGG	2 cut(s)	496, 863
NlaIV	GGNNCC	1 cut(s)	721
NmuCI	GTSAC	1 cut(s)	677
NspI	RCATGY	2 cut(s)	26, 945
NspV	TTCGAA	1 cut(s)	951
PaeI	GCATGC	2 cut(s)	26, 945
PagI	TCATGA	3 cut(s)	367, 511, 793
PceI	AGGCCT	1 cut(s)	105
PctI	GAATGC	1 cut(s)	656
PdmI	GAANNNNTTC	1 cut(s)	395
PfeI	GAWTC	3 cut(s)	38, 294, 429
PflFI	GACNNNGTC	1 cut(s)	277
PkrI	GCNGC	1 cut(s)	466
PleI	GAGTC	4 cut(s)	23, 104, 326, 615
PmaCI	CACGTG	1 cut(s)	180
PmlI	CACGTG	1 cut(s)	180
PpsI	GAGTC	4 cut(s)	23, 104, 326, 615
Ppu21I	YACGTR	1 cut(s)	180
Psp6I	CCWGG	2 cut(s)	494, 861
PspCI	CACGTG	1 cut(s)	180
PspGI	CCWGG	2 cut(s)	494, 861
PspN4I	GGNNCC	1 cut(s)	721
PspPI	GGNCC	2 cut(s)	923, 992
PsrI	GAACNNNNNNTAC	2 cut(s)	252, 284
PstNI	CAGNNNCTG	1 cut(s)	116
PsuI	RGATCY	2 cut(s)	243, 376
PsyI	GACNNNGTC	1 cut(s)	277
RsaI	GTAC	4 cut(s)	132, 452, 560, 986
RsaNI	GTAC	4 cut(s)	131, 451, 559, 985
Rsr2I	CGGWCCG	1 cut(s)	992
RsrII	CGGWCCG	1 cut(s)	992
SatI	GCNGC	1 cut(s)	465
Sau96I	GGNCC	2 cut(s)	923, 992
ScaI	AGTACT	1 cut(s)	986
SchI	GAGTC	4 cut(s)	23, 105, 327, 615
ScrFI	CCNGG	2 cut(s)	496, 863
SduI	GDGCHC	1 cut(s)	895
SexAI	ACCWGGT	1 cut(s)	494
SfaNI	GCATC	5 cut(s)	103, 234, 373, 535, 961
SfuI	TTCGAA	1 cut(s)	951
SinI	GGWCC	2 cut(s)	923, 992
SphI	GCATGC	2 cut(s)	26, 945
Sse9I	AATT	7 cut(s)	201, 469, 552, 577, 644, 771, 822
SseBI	AGGCCT	1 cut(s)	105
SspI	AATATT	1 cut(s)	603
SspMI	CTAG	2 cut(s)	107, 413
StuI	AGGCCT	1 cut(s)	105
StyD4I	CCNGG	2 cut(s)	494, 861
StyI	CCWWGG	1 cut(s)	349
TaaI	ACNGT	4 cut(s)	124, 424, 484, 992
TaiI	ACGT	1 cut(s)	182
TaqI	TCGA	3 cut(s)	78, 624, 951
TaqII	GACCGA	1 cut(s)	69
TasI	AATT	7 cut(s)	201, 469, 552, 577, 644, 771, 822
TatI	WGTACW	2 cut(s)	558, 984
TfiI	GAWTC	3 cut(s)	38, 294, 429
TscAI	CASTG	2 cut(s)	226, 330
TseFI	GTSAC	1 cut(s)	677
TseI	GCWGC	1 cut(s)	464
Tsp45I	GTSAC	1 cut(s)	677
TspDTI	ATGAA	5 cut(s)	51, 116, 133, 356, 782
TspRI	CASTG	2 cut(s)	226, 330
Tth111I	GACNNNGTC	1 cut(s)	277
VpaK11BI	GGWCC	2 cut(s)	923, 992
XapI	RAATTY	1 cut(s)	577
XceI	RCATGY	2 cut(s)	26, 945
XcmI	CCANNNNNNNNNTGG	1 cut(s)	356
XmnI	GAANNNNTTC	1 cut(s)	395
XspI	CTAG	2 cut(s)	107, 413
ZrmI	AGTACT	1 cut(s)	986

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.