Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006926

Physical Location & Seq

Genomic Coordinates Forward (+)

14459310 .. 14462215

Gene Structure 2906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g18030.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGATATCAAAGCTGCTGGGCATGGAGAAAACGACCGAGCCGAAGAGGCTTTTGATGTGACTATGGCTGGTGTCAAAGGCCTCGTTGATGCCGGCACAGTTCACGTACCCAGGATATTCATAGGGCCACCTAATGAGCTCACCCAGTTTGCCATGTGTTACGAACCGAACATGCAAATTCCAGTCATTGATCTCCATGGAACCCATAAGCAGATTGTGGATGAAGTTCGGACCGTGTCCGAAACATGGGGATTCTTCCAAGTGGTCAATCATGGAGTCCCAGTGAGTGTACTGGAAGATATGATCTATGGAGTAGTCAAGTTTAACGAGCAGGATCTTGATGCCAAGAAAGTTTGGTATAACCGTGATCGAGCAAAAACTGTCAGATTCAATAGTAACTATGACGTGTACCACGCACGAGCGGCTAATTGGAGGGACACTCTGATTTATACCAGGCCTGCTGCTGCTGTTGATGATTTATTCATCCAAACTCCTATACACGGAGATGAAACAGTTGAGTACACAAAGCATGTCATAAATTTGGGAGACCAACTTTTTGGATTATTATGGGAGGCTCTTGGGCTCAAACCAGACAACCTAAAGGAATTGGGATGTGCTAAAGATTATACCTGTGCGTGCCACTACTCTCCAGCATGCCCAGAACCAGAATTAACAATGGGAAGCAGCAGGCACTCAGATCCTTATTTCCTGACTATTCACCTTCAAGATCAAATTGGTGGCCTTCAAGTCCTTCATGACAATCACTGGGTTAATGTGAACCCAATTTCAGGTGGCTTGGTAGTAAATATAGGTGACCTTCTTCAGGTTATGCCAAATGACAAGTTTCAGAGTGTTCAACATAGAGTGCTTGAACCTCAATCTGTAACACGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

299

Amino Acids

33.5

Weight (kDa)

5.37

Isoelectric Point (pI)

34.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006926)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03310
malus_domestica	MD05G1014300.v1.1 MD13G1212100.v1.1
prunus_persica	Prupe.1G037000_v2.0.a1 Prupe.1G037000_v2.0.a1 Prupe.1G037000_v2.0.a1
pyrus_communis	pycom13g18390 pycom16g18030
rosa_chinensis	RchiOBHm_Chr4g0392321 RchiOBHm_Chr4g0392351
rosa_laevigata	RLG00000009818
rosa_multiflora	Rmu_sc0001231.1_g000012 Rmu_sc0001231.1_g000019
rosa_roxburghii	Rroxscaffold_5G00337490 Rroxscaffold_5G00337530
rosa_rugosa	Rorug03G0338300
rosa_samantha	Rh4AG041700 Rh4AG042000 Rh4BG036600 Rh4BG036900 Rh4CG044300 Rh4CG044600 Rh4CG044800 Rh4DG039000
rosa_wichuraiana	Rw4G003230 Rw4G003250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	422
AciI	CCGC	1 cut(s)	422
AclWI	GGATC	2 cut(s)	342, 692
AcsI	RAATTY	2 cut(s)	177, 538
AcuI	CTGAAG	1 cut(s)	806
AfaI	GTAC	4 cut(s)	108, 291, 410, 521
AfiI	CCNNNNNNNGG	4 cut(s)	246, 500, 788, 823
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	5 cut(s)	391, 725, 746, 857, 872
AjiI	CACGTC	1 cut(s)	406
AjnI	CCWGG	2 cut(s)	110, 452
AluBI	AGCT	2 cut(s)	14, 139
AluI	AGCT	2 cut(s)	14, 139
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	1 cut(s)	540
AlwI	GGATC	2 cut(s)	342, 692
AoxI	GGCC	4 cut(s)	79, 125, 455, 739
ApeKI	GCWGC	4 cut(s)	14, 461, 464, 684
ApoI	RAATTY	2 cut(s)	177, 538
ArsI	GACNNNNNNTTYG	2 cut(s)	539, 571
AspS9I	GGNCC	2 cut(s)	125, 231
AsuHPI	GGTGA	3 cut(s)	133, 710, 824
AvaII	GGWCC	1 cut(s)	231
BanII	GRGCYC	2 cut(s)	141, 585
BauI	CACGAG	1 cut(s)	417
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	3 cut(s)	448, 451, 696
BciT130I	CCWGG	2 cut(s)	112, 454
BcoDI	GTCTC	1 cut(s)	540
BglI	GCCNNNNNGGC	1 cut(s)	47
BisI	GCNGC	5 cut(s)	15, 423, 462, 465, 685
BlsI	GCNGC	5 cut(s)	16, 424, 463, 466, 686
Bme1390I	CCNGG	2 cut(s)	112, 454
Bme18I	GGWCC	1 cut(s)	231
BmgBI	CACGTC	1 cut(s)	406
BmgT120I	GGNCC	2 cut(s)	125, 231
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	2 cut(s)	112, 454
BmrI	ACTGGG	3 cut(s)	139, 275, 775
BmsI	GCATC	2 cut(s)	79, 331
BmuI	ACTGGG	3 cut(s)	139, 275, 775
BplI	GAGNNNNNCTC	2 cut(s)	424, 456
BpmI	CTGGAG	1 cut(s)	633
BsaAI	YACGTR	1 cut(s)	106
BsaI	GGTCTC	1 cut(s)	540
BsaJI	CCNNGG	2 cut(s)	110, 196
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	4 cut(s)	246, 500, 788, 823
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	5 cut(s)	145, 182, 281, 297, 770
BseBI	CCWGG	2 cut(s)	112, 454
BseDI	CCNNGG	2 cut(s)	110, 196
BseGI	GGATG	3 cut(s)	226, 483, 617
BseLI	CCNNNNNNNGG	4 cut(s)	246, 500, 788, 823
BseMII	CTCAG	1 cut(s)	708
BseNI	ACTGG	5 cut(s)	145, 182, 281, 297, 770
BseXI	GCAGC	3 cut(s)	448, 451, 696
BseYI	CCCAGC	1 cut(s)	17
Bsh1285I	CGRYCG	1 cut(s)	37
BshFI	GGCC	4 cut(s)	81, 127, 457, 741
BsiEI	CGRYCG	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	2 cut(s)	263, 449
BslI	CCNNNNNNNGG	4 cut(s)	246, 500, 788, 823
BsmAI	GTCTC	1 cut(s)	540
BsmFI	GGGAC	2 cut(s)	263, 449
BsnI	GGCC	4 cut(s)	81, 127, 457, 741
Bso31I	GGTCTC	1 cut(s)	540
Bsp1286I	GDGCHC	2 cut(s)	141, 585
Bsp143I	GATC	6 cut(s)	190, 303, 334, 367, 697, 727
Bsp19I	CCATGG	1 cut(s)	196
BspACI	CCGC	1 cut(s)	422
BspANI	GGCC	4 cut(s)	81, 127, 457, 741
BspCNI	CTCAG	1 cut(s)	707
BspHI	TCATGA	1 cut(s)	754
BspLI	GGNNCC	1 cut(s)	202
BspPI	GGATC	2 cut(s)	342, 692
BspTNI	GGTCTC	1 cut(s)	540
BsrBI	CCGCTC	1 cut(s)	422
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	5 cut(s)	145, 182, 281, 297, 770
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	2 cut(s)	110, 196
BssMI	GATC	6 cut(s)	190, 303, 334, 367, 697, 727
BssSI	CACGAG	1 cut(s)	417
BssT1I	CCWWGG	1 cut(s)	196
Bst2BI	CACGAG	1 cut(s)	417
Bst2UI	CCWGG	2 cut(s)	112, 454
Bst4CI	ACNGT	5 cut(s)	100, 235, 365, 382, 514
Bst6I	CTCTTC	1 cut(s)	39
BstBAI	YACGTR	1 cut(s)	106
BstC8I	GCNNGC	5 cut(s)	94, 459, 637, 655, 689
BstDEI	CTNAG	1 cut(s)	694
BstDSI	CCRYGG	1 cut(s)	196
BstEII	GGTNACC	1 cut(s)	812
BstENI	CCTNNNNNAGG	1 cut(s)	821
BstF5I	GGATG	3 cut(s)	226, 483, 617
BstKTI	GATC	6 cut(s)	193, 306, 337, 370, 700, 730
BstMAI	GTCTC	1 cut(s)	540
BstMBI	GATC	6 cut(s)	190, 303, 334, 367, 697, 727
BstMCI	CGRYCG	1 cut(s)	37
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 422
BstNI	CCWGG	2 cut(s)	112, 454
BstNSI	RCATGY	3 cut(s)	175, 533, 657
BstPI	GGTNACC	1 cut(s)	812
BstSCI	CCNGG	2 cut(s)	110, 452
BstV1I	GCAGC	3 cut(s)	448, 451, 696
BstX2I	RGATCY	2 cut(s)	334, 697
BstXI	CCANNNNNNTGG	1 cut(s)	557
BstYI	RGATCY	2 cut(s)	334, 697
BsuRI	GGCC	4 cut(s)	81, 127, 457, 741
BtgI	CCRYGG	1 cut(s)	196
BtrI	CACGTC	1 cut(s)	406
BtsCI	GGATG	3 cut(s)	226, 483, 617
BtsIMutI	CAGTG	2 cut(s)	288, 763
Cac8I	GCNNGC	5 cut(s)	94, 459, 637, 655, 689
CciI	TCATGA	1 cut(s)	754
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	2 cut(s)	125, 231
CpoI	CGGWCCG	1 cut(s)	231
Csp6I	GTAC	4 cut(s)	107, 290, 409, 520
CspI	CGGWCCG	1 cut(s)	231
CviAII	CATG	9 cut(s)	23, 154, 172, 197, 246, 272, 530, 654, 755
CviQI	GTAC	4 cut(s)	107, 290, 409, 520
DdeI	CTNAG	1 cut(s)	694
DpnI	GATC	6 cut(s)	192, 305, 336, 369, 699, 729
DpnII	GATC	6 cut(s)	190, 303, 334, 367, 697, 727
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Ecl136II	GAGCTC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	196
Eco147I	AGGCCT	2 cut(s)	81, 457
Eco24I	GRGCYC	2 cut(s)	141, 585
Eco31I	GGTCTC	1 cut(s)	540
Eco32I	GATATC	1 cut(s)	7
Eco47I	GGWCC	1 cut(s)	231
Eco53kI	GAGCTC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	806
Eco91I	GGTNACC	1 cut(s)	812
EcoICRI	GAGCTC	1 cut(s)	139
EcoNI	CCTNNNNNAGG	1 cut(s)	821
EcoO65I	GGTNACC	1 cut(s)	812
EcoRII	CCWGG	2 cut(s)	110, 452
EcoRV	GATATC	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	196
EcoT38I	GRGCYC	2 cut(s)	141, 585
ErhI	CCWWGG	1 cut(s)	196
FaeI	CATG	9 cut(s)	26, 157, 175, 200, 249, 275, 533, 657, 758
FaqI	GGGAC	2 cut(s)	263, 449
FatI	CATG	9 cut(s)	22, 153, 171, 196, 245, 271, 529, 653, 754
Fnu4HI	GCNGC	5 cut(s)	15, 423, 462, 465, 685
FokI	GGATG	3 cut(s)	233, 470, 624
FriOI	GRGCYC	2 cut(s)	141, 585
Fsp4HI	GCNGC	5 cut(s)	15, 423, 462, 465, 685
GluI	GCNGC	5 cut(s)	15, 423, 462, 465, 685
GsaI	CCCAGC	1 cut(s)	21
GsuI	CTGGAG	1 cut(s)	633
HaeIII	GGCC	4 cut(s)	81, 127, 457, 741
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	9 cut(s)	26, 157, 175, 200, 249, 275, 533, 657, 758
HinfI	GANTC	3 cut(s)	252, 276, 387
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	3 cut(s)	133, 710, 824
Hpy166II	GTNNAC	5 cut(s)	103, 290, 409, 522, 778
Hpy188I	TCNGA	6 cut(s)	231, 241, 386, 444, 697, 849
Hpy188III	TCNNGA	4 cut(s)	338, 709, 725, 755
Hpy8I	GTNNAC	5 cut(s)	103, 290, 409, 522, 778
HpyAV	CCTTC	4 cut(s)	731, 752, 761, 827
HpyCH4III	ACNGT	5 cut(s)	100, 235, 365, 382, 514
HpyCH4IV	ACGT	2 cut(s)	105, 405
HpyCH4V	TGCA	1 cut(s)	175
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 422
HpyF3I	CTNAG	1 cut(s)	694
HpySE526I	ACGT	2 cut(s)	105, 405
Hsp92II	CATG	9 cut(s)	26, 157, 175, 200, 249, 275, 533, 657, 758
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Kzo9I	GATC	6 cut(s)	190, 303, 334, 367, 697, 727
Lsp1109I	GCAGC	3 cut(s)	448, 451, 696
LweI	GCATC	2 cut(s)	79, 331
MaeII	ACGT	2 cut(s)	105, 405
MaeIII	GTNAC	5 cut(s)	58, 158, 395, 812, 883
MalI	GATC	6 cut(s)	192, 305, 336, 369, 699, 729
MbiI	CCGCTC	1 cut(s)	422
MboI	GATC	6 cut(s)	190, 303, 334, 367, 697, 727
MboII	GAAGA	4 cut(s)	56, 247, 308, 812
MflI	RGATCY	2 cut(s)	334, 697
MhlI	GDGCHC	2 cut(s)	141, 585
MluCI	AATT	7 cut(s)	177, 427, 538, 605, 668, 732, 783
MlyI	GAGTC	1 cut(s)	285
MnlI	CCTC	5 cut(s)	40, 92, 426, 565, 885
MroNI	GCCGGC	1 cut(s)	92
MseI	TTAA	3 cut(s)	324, 671, 771
MslI	CAYNNNNRTG	1 cut(s)	504
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	2 cut(s)	112, 454
MvaI	CCWGG	2 cut(s)	112, 454
MwoI	GCNNNNNNNGC	2 cut(s)	47, 422
NaeI	GCCGGC	1 cut(s)	94
NcoI	CCATGG	1 cut(s)	196
NdeII	GATC	6 cut(s)	190, 303, 334, 367, 697, 727
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	9 cut(s)	26, 157, 175, 200, 249, 275, 533, 657, 758
NlaIV	GGNNCC	1 cut(s)	202
NmuCI	GTSAC	2 cut(s)	58, 812
NspI	RCATGY	3 cut(s)	175, 533, 657
PaeI	GCATGC	1 cut(s)	657
PagI	TCATGA	1 cut(s)	754
PceI	AGGCCT	2 cut(s)	81, 457
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PdiI	GCCGGC	1 cut(s)	94
PfeI	GAWTC	2 cut(s)	252, 387
PflFI	GACNNNGTC	1 cut(s)	235
PkrI	GCNGC	5 cut(s)	16, 424, 463, 466, 686
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
Ppu21I	YACGTR	1 cut(s)	106
Psp124BI	GAGCTC	1 cut(s)	141
Psp6I	CCWGG	2 cut(s)	110, 452
PspEI	GGTNACC	1 cut(s)	812
PspFI	CCCAGC	1 cut(s)	17
PspGI	CCWGG	2 cut(s)	110, 452
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	2 cut(s)	125, 231
PsuI	RGATCY	2 cut(s)	334, 697
PsyI	GACNNNGTC	1 cut(s)	235
RsaI	GTAC	4 cut(s)	108, 291, 410, 521
RsaNI	GTAC	4 cut(s)	107, 290, 409, 520
RseI	CAYNNNNRTG	1 cut(s)	504
Rsr2I	CGGWCCG	1 cut(s)	231
RsrII	CGGWCCG	1 cut(s)	231
SacI	GAGCTC	1 cut(s)	141
SaqAI	TTAA	3 cut(s)	324, 671, 771
SatI	GCNGC	5 cut(s)	15, 423, 462, 465, 685
Sau3AI	GATC	6 cut(s)	190, 303, 334, 367, 697, 727
Sau96I	GGNCC	2 cut(s)	125, 231
SchI	GAGTC	1 cut(s)	285
ScrFI	CCNGG	2 cut(s)	112, 454
SduI	GDGCHC	2 cut(s)	141, 585
SfaNI	GCATC	2 cut(s)	79, 331
SinI	GGWCC	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	504
SphI	GCATGC	1 cut(s)	657
Sse9I	AATT	7 cut(s)	177, 427, 538, 605, 668, 732, 783
SseBI	AGGCCT	2 cut(s)	81, 457
SsiI	CCGC	1 cut(s)	422
SstI	GAGCTC	1 cut(s)	141
StuI	AGGCCT	2 cut(s)	81, 457
StyD4I	CCNGG	2 cut(s)	110, 452
StyI	CCWWGG	1 cut(s)	196
TaaI	ACNGT	5 cut(s)	100, 235, 365, 382, 514
TaiI	ACGT	2 cut(s)	108, 408
TaqI	TCGA	1 cut(s)	370
TaqII	GACCGA	1 cut(s)	51
TasI	AATT	7 cut(s)	177, 427, 538, 605, 668, 732, 783
TatI	WGTACW	2 cut(s)	289, 519
TauI	GCSGC	1 cut(s)	425
TfiI	GAWTC	2 cut(s)	252, 387
Tru1I	TTAA	3 cut(s)	324, 671, 771
Tru9I	TTAA	3 cut(s)	324, 671, 771
TscAI	CASTG	2 cut(s)	288, 770
TseFI	GTSAC	2 cut(s)	58, 812
TseI	GCWGC	4 cut(s)	14, 461, 464, 684
Tsp45I	GTSAC	2 cut(s)	58, 812
TspDTI	ATGAA	5 cut(s)	109, 237, 472, 522, 743
TspGWI	ACGGA	1 cut(s)	516
TspRI	CASTG	2 cut(s)	288, 770
Tth111I	GACNNNGTC	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	231
XagI	CCTNNNNNAGG	1 cut(s)	821
XapI	RAATTY	2 cut(s)	177, 538
XceI	RCATGY	3 cut(s)	175, 533, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.