Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0006926

Physical Location & Seq

Genomic Coordinates Forward (+)

8942174 .. 8944519

Gene Structure 2346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG044800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGAAGAATAGTACATTGTGGCTCTTGGCATATGTTTGTATGGCTTGTACTCAATCAAATTTGCAAATTCCTGTCATAAATGTCGGTGGCCTCTACGGTGATCGCCACAAGGAGATTGTTAATGAAGTTCGGATTGCATCTGAGACATGGGGTTTCTTCCAAGTGGTGAATCATGGAGTTCCATTAAATGTGCTTGAACATATGATCCAAGGCGTAAGGAGGTTTAATGAGCAAGATCTTGAGGTGAAGAAAGAGTTCTATAGTCGTGATGTAAAGAGAACTGTGAGATTCAATAGCAATTACGATCTCTACCAGTCAAAAGCAGCTAATTGGAGGGACACTTTGGCTTTTACCAAGCCCGCAGTTGATCATGAACCCCAAGAACTCCCTCAAGTTTGTAGAGAAGTAGCACTTGAGTACACAAACCATGTCGTAGAGTTGGCAGATCAACTCTTTGGATTGTTATCGGAGGCTCTGGAACTCAAACCGGATTACCTAACAAGGGAAATGGAGTGTGCTAAGTTTTATACCTGTGTCTGCCACTACTATCCAGCATGCCCTGAACCAGAGCTAACTGTGGGAACTAGCAAGCATTCAGATCCAGCGTTCCTCACAATTCTTCTTCAAGACAAAATCGGTGGAGACACTGCTGCCAAGTCTTATGGTCCGATCAAAGAGCTTATATCAGATGAAAACCCTCCTCTCTACAAGGATTTCTCCATAGATGAGTACCATGGCAAGTTCTTTTCTCAAGGGCTTGATGAGAGGTCTGGACTTGACCAGTTCAAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

264

Amino Acids

30.26

Weight (kDa)

5.22

Isoelectric Point (pI)

44.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	23 - 126	5.3e-18	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	177 - 217	7e-09	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006926)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03310
malus_domestica	MD05G1014300.v1.1 MD13G1212100.v1.1
prunus_persica	Prupe.1G037000_v2.0.a1 Prupe.1G037000_v2.0.a1 Prupe.1G037000_v2.0.a1
pyrus_communis	pycom13g18390 pycom16g18030
rosa_chinensis	RchiOBHm_Chr4g0392321 RchiOBHm_Chr4g0392351
rosa_laevigata	RLG00000009818
rosa_multiflora	Rmu_sc0001231.1_g000012 Rmu_sc0001231.1_g000019
rosa_roxburghii	Rroxscaffold_5G00337490 Rroxscaffold_5G00337530
rosa_rugosa	Rorug03G0338300
rosa_samantha	Rh4AG041700 Rh4AG042000 Rh4BG036600 Rh4BG036900 Rh4CG044300 Rh4CG044600 Rh4CG044800 Rh4DG039000
rosa_wichuraiana	Rw4G003230 Rw4G003250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	360
AclWI	GGATC	2 cut(s)	199, 593
AcsI	RAATTY	2 cut(s)	58, 66
AfaI	GTAC	4 cut(s)	13, 49, 419, 731
AfiI	CCNNNNNNNGG	1 cut(s)	502
AgsI	TTSAA	4 cut(s)	197, 292, 626, 787
AloI	GAACNNNNNNTCC	2 cut(s)	189, 221
AluBI	AGCT	4 cut(s)	326, 571, 679, 790
AluI	AGCT	4 cut(s)	326, 571, 679, 790
Alw26I	GTCTC	2 cut(s)	137, 636
AlwI	GGATC	2 cut(s)	199, 593
AoxI	GGCC	1 cut(s)	88
ApeKI	GCWGC	2 cut(s)	323, 650
ApoI	RAATTY	2 cut(s)	58, 66
Asp700I	GAANNNNTTC	1 cut(s)	254
AspS9I	GGNCC	1 cut(s)	665
AsuHPI	GGTGA	3 cut(s)	110, 178, 256
AvaII	GGWCC	1 cut(s)	665
BbvI	GCAGC	2 cut(s)	335, 637
BclI	TGATCA	1 cut(s)	367
BcoDI	GTCTC	2 cut(s)	137, 636
BfaI	CTAG	1 cut(s)	585
BfmI	CTRYAG	1 cut(s)	259
BglII	AGATCT	1 cut(s)	235
BisI	GCNGC	2 cut(s)	324, 651
BlsI	GCNGC	2 cut(s)	325, 652
Bme18I	GGWCC	1 cut(s)	665
BmgT120I	GGNCC	1 cut(s)	665
BmsI	GCATC	1 cut(s)	146
BpuEI	CTTGAG	4 cut(s)	260, 375, 434, 735
BsaBI	GATNNNNATC	1 cut(s)	463
BsaJI	CCNNGG	2 cut(s)	208, 733
BsaWI	WCCGGW	1 cut(s)	487
Bsc4I	CCNNNNNNNGG	1 cut(s)	502
Bse1I	ACTGG	2 cut(s)	313, 781
Bse8I	GATNNNNATC	1 cut(s)	463
BseDI	CCNNGG	2 cut(s)	208, 733
BseJI	GATNNNNATC	1 cut(s)	463
BseLI	CCNNNNNNNGG	1 cut(s)	502
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	2 cut(s)	313, 781
BseRI	GAGGAG	1 cut(s)	690
BseXI	GCAGC	2 cut(s)	335, 637
BshFI	GGCC	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	488
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	1 cut(s)	502
BsmAI	GTCTC	2 cut(s)	137, 636
BsmFI	GGGAC	1 cut(s)	350
BsmI	GAATGC	1 cut(s)	592
BsnI	GGCC	1 cut(s)	90
Bsp143I	GATC	8 cut(s)	100, 204, 235, 304, 367, 445, 598, 669
Bsp19I	CCATGG	1 cut(s)	733
BspACI	CCGC	1 cut(s)	360
BspANI	GGCC	1 cut(s)	90
BspCNI	CTCAG	1 cut(s)	133
BspHI	TCATGA	1 cut(s)	370
BspPI	GGATC	2 cut(s)	199, 593
BsrI	ACTGG	2 cut(s)	313, 781
BssECI	CCNNGG	2 cut(s)	208, 733
BssMI	GATC	8 cut(s)	100, 204, 235, 304, 367, 445, 598, 669
BssT1I	CCWWGG	2 cut(s)	208, 733
Bst4CI	ACNGT	3 cut(s)	98, 283, 577
BstC8I	GCNNGC	3 cut(s)	360, 556, 590
BstDEI	CTNAG	2 cut(s)	141, 519
BstDSI	CCRYGG	1 cut(s)	733
BstKTI	GATC	8 cut(s)	103, 207, 238, 307, 370, 448, 601, 672
BstMAI	GTCTC	2 cut(s)	137, 636
BstMBI	GATC	8 cut(s)	100, 204, 235, 304, 367, 445, 598, 669
BstNSI	RCATGY	1 cut(s)	558
BstSFI	CTRYAG	1 cut(s)	259
BstV1I	GCAGC	2 cut(s)	335, 637
BstX2I	RGATCY	2 cut(s)	235, 598
BstYI	RGATCY	2 cut(s)	235, 598
BsuRI	GGCC	1 cut(s)	90
BtgI	CCRYGG	1 cut(s)	733
BtsI	GCAGTG	1 cut(s)	645
BtsIMutI	CAGTG	1 cut(s)	645
Cac8I	GCNNGC	3 cut(s)	360, 556, 590
CciI	TCATGA	1 cut(s)	370
Cfr13I	GGNCC	1 cut(s)	665
Csp6I	GTAC	4 cut(s)	12, 48, 418, 730
CspCI	CAANNNNNGTGG	2 cut(s)	619, 654
CviAII	CATG	6 cut(s)	147, 173, 371, 428, 555, 734
CviQI	GTAC	4 cut(s)	12, 48, 418, 730
DdeI	CTNAG	2 cut(s)	141, 519
DpnI	GATC	8 cut(s)	102, 206, 237, 306, 369, 447, 600, 671
DpnII	GATC	8 cut(s)	100, 204, 235, 304, 367, 445, 598, 669
Eco130I	CCWWGG	2 cut(s)	208, 733
Eco47I	GGWCC	1 cut(s)	665
EcoT14I	CCWWGG	2 cut(s)	208, 733
ErhI	CCWWGG	2 cut(s)	208, 733
FaeI	CATG	6 cut(s)	150, 176, 374, 431, 558, 737
FalI	AAGNNNNNCTT	2 cut(s)	396, 428
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	6 cut(s)	146, 172, 370, 427, 554, 733
FauI	CCCGC	1 cut(s)	367
FauNDI	CATATG	2 cut(s)	31, 201
FbaI	TGATCA	1 cut(s)	367
Fnu4HI	GCNGC	2 cut(s)	324, 651
Fsp4HI	GCNGC	2 cut(s)	324, 651
FspBI	CTAG	1 cut(s)	585
GluI	GCNGC	2 cut(s)	324, 651
HaeIII	GGCC	1 cut(s)	90
HapII	CCGG	1 cut(s)	488
Hin1II	CATG	6 cut(s)	150, 176, 374, 431, 558, 737
HinfI	GANTC	2 cut(s)	169, 288
HpaII	CCGG	1 cut(s)	488
HphI	GGTGA	3 cut(s)	110, 178, 256
Hpy166II	GTNNAC	1 cut(s)	420
Hpy188I	TCNGA	6 cut(s)	132, 142, 469, 598, 669, 688
Hpy188III	TCNNGA	6 cut(s)	239, 266, 371, 476, 626, 771
Hpy8I	GTNNAC	1 cut(s)	420
HpyCH4III	ACNGT	3 cut(s)	98, 283, 577
HpyCH4V	TGCA	2 cut(s)	64, 137
HpyF3I	CTNAG	2 cut(s)	141, 519
Hsp92II	CATG	6 cut(s)	150, 176, 374, 431, 558, 737
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	8 cut(s)	100, 204, 235, 304, 367, 445, 598, 669
Lsp1109I	GCAGC	2 cut(s)	335, 637
LweI	GCATC	1 cut(s)	146
MaeI	CTAG	1 cut(s)	585
MalI	GATC	8 cut(s)	102, 206, 237, 306, 369, 447, 600, 671
MboI	GATC	8 cut(s)	100, 204, 235, 304, 367, 445, 598, 669
MboII	GAAGA	5 cut(s)	16, 148, 259, 611, 614
MflI	RGATCY	2 cut(s)	235, 598
MluCI	AATT	5 cut(s)	58, 66, 298, 328, 615
MroXI	GAANNNNTTC	1 cut(s)	254
MseI	TTAA	3 cut(s)	120, 185, 225
MspI	CCGG	1 cut(s)	488
Mva1269I	GAATGC	1 cut(s)	592
NcoI	CCATGG	1 cut(s)	733
NdeI	CATATG	2 cut(s)	31, 201
NdeII	GATC	8 cut(s)	100, 204, 235, 304, 367, 445, 598, 669
NlaIII	CATG	6 cut(s)	150, 176, 374, 431, 558, 737
NspI	RCATGY	1 cut(s)	558
PaeI	GCATGC	1 cut(s)	558
PagI	TCATGA	1 cut(s)	370
PctI	GAATGC	1 cut(s)	592
PdmI	GAANNNNTTC	1 cut(s)	254
PfeI	GAWTC	2 cut(s)	169, 288
PkrI	GCNGC	2 cut(s)	325, 652
PspPI	GGNCC	1 cut(s)	665
PsuI	RGATCY	2 cut(s)	235, 598
RsaI	GTAC	4 cut(s)	13, 49, 419, 731
RsaNI	GTAC	4 cut(s)	12, 48, 418, 730
SaqAI	TTAA	3 cut(s)	120, 185, 225
SatI	GCNGC	2 cut(s)	324, 651
Sau3AI	GATC	8 cut(s)	100, 204, 235, 304, 367, 445, 598, 669
Sau96I	GGNCC	1 cut(s)	665
SetI	ASST	9 cut(s)	224, 246, 328, 498, 533, 573, 681, 770, 792
SfaNI	GCATC	1 cut(s)	146
SfcI	CTRYAG	1 cut(s)	259
SinI	GGWCC	1 cut(s)	665
SmlI	CTYRAG	4 cut(s)	239, 390, 413, 750
SmoI	CTYRAG	4 cut(s)	239, 390, 413, 750
SphI	GCATGC	1 cut(s)	558
Sse9I	AATT	5 cut(s)	58, 66, 298, 328, 615
SsiI	CCGC	1 cut(s)	360
SspMI	CTAG	1 cut(s)	585
StyI	CCWWGG	2 cut(s)	208, 733
TaaI	ACNGT	3 cut(s)	98, 283, 577
TasI	AATT	5 cut(s)	58, 66, 298, 328, 615
TatI	WGTACW	3 cut(s)	11, 47, 417
TfiI	GAWTC	2 cut(s)	169, 288
Tru1I	TTAA	3 cut(s)	120, 185, 225
Tru9I	TTAA	3 cut(s)	120, 185, 225
TscAI	CASTG	1 cut(s)	652
TseI	GCWGC	2 cut(s)	323, 650
TspDTI	ATGAA	4 cut(s)	17, 138, 387, 705
TspRI	CASTG	1 cut(s)	652
VpaK11BI	GGWCC	1 cut(s)	665
XapI	RAATTY	2 cut(s)	58, 66
XceI	RCATGY	1 cut(s)	558
XmnI	GAANNNNTTC	1 cut(s)	254
XspI	CTAG	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.