Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006926

Physical Location & Seq

Genomic Coordinates Forward (+)

2576352 .. 2579402

Gene Structure 3051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G037000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGATACCTCAGTTCTTGGCCGCAGAACATCATCACATGATGAAAACCAGTCTAAATACGACCGAGCAAAAGAGCTAAAAGCTTTTGATGACACAAAGGCTGGTGTGAAAGGCCTAGTTGATGCCGGCACACTTCATGTACCCAAGATATTCATAGGGCCACCCAACGAGCTCGCTCACTTCCCCACATGTCACCAACCCAACCTGCAAGTTCCTGTCATTGATCTCCAAGGCATCAACGGTGATCTCCACAAGCAGATTGTAGATGAAGTTAGGGCCGCGTCCGAAACATGGGGCTTTTTCCAAGTGGTCAACCATGAAGTCCCATTGACTGTGTTGGAAAATATGATCCAAGGAGTGCGCAAGTTTCATGAGCAGGATCTTGATGTGAAGAAAGAGTTCTATTCCCGTGATCGAGAAACAACTGTCAGATTCAATAGCAATTTTGATCTGTACAAATCAAAAGCAGCTAATTGGAGGGACACTCTGGCTTTTGCAAGGGCTGTTGTTGATCAGGACCCCAAACAACTCCCTTCAGTTTGTAGAGATGCAGTAATTGAATACACAAAGCATGTCAAAAGTTTGGGAGACCAACTCTTCGGATTGTTATCAGAGGCTCTTGGTCTCAAGCCTGACCACCTAAGGGAATTAGAATGTTCTAAAGATTATTCCTTTGTGTGCCACTACTATCCAGCATGCCCAGAACCAGAACTTACTCTGGGAAGTAGCAAGCACTCAGATCCTTCTTTCCTCACAATTCTTCTTCAAGACCAAATTGGTGGCCTCCAAGTTCTTCATGACAATCAATGGGTTAATGTTCACCCTATTTCAGGTGGCTTAGTAGTAAATATTGCTGACTTTCTTCAGGCTATATCTAATGACAAGCTTCAGAGTGTTCAACATAGAGTGCTTGCAAACCGGGCCGGTCCAAGAGTTTCCATAGCTTGCTTTTTCACAGGACAGAGAACTGGAGCACTTGCCAAGTCCTATGGTCCAATCAAAGAGCTTATATCAGAAGAGAACCCTCCTCTGTATAGACATTTCTTGATAAGTGAATATTATGGCAAGTTCTTTTCTCAGGGGCTTGATGAGAAGTCTGGTCTTGACCATTTCAGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

374

Amino Acids

42.01

Weight (kDa)

6.14

Isoelectric Point (pI)

37.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006926)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03310
malus_domestica	MD05G1014300.v1.1 MD13G1212100.v1.1
prunus_persica	Prupe.1G037000_v2.0.a1 Prupe.1G037000_v2.0.a1 Prupe.1G037000_v2.0.a1
pyrus_communis	pycom13g18390 pycom16g18030
rosa_chinensis	RchiOBHm_Chr4g0392321 RchiOBHm_Chr4g0392351
rosa_laevigata	RLG00000009818
rosa_multiflora	Rmu_sc0001231.1_g000012 Rmu_sc0001231.1_g000019
rosa_roxburghii	Rroxscaffold_5G00337490 Rroxscaffold_5G00337530
rosa_rugosa	Rorug03G0338300
rosa_samantha	Rh4AG041700 Rh4AG042000 Rh4BG036600 Rh4BG036900 Rh4CG044300 Rh4CG044600 Rh4CG044800 Rh4DG039000
rosa_wichuraiana	Rw4G003230 Rw4G003250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	362
Acc36I	ACCTGC	1 cut(s)	213
AccII	CGCG	1 cut(s)	281
AciI	CCGC	2 cut(s)	22, 279
AclWI	GGATC	3 cut(s)	343, 387, 734
AcoI	YGGCCR	1 cut(s)	19
AcuI	CTGAAG	3 cut(s)	519, 848, 872
AfaI	GTAC	2 cut(s)	141, 455
AfiI	CCNNNNNNNGG	3 cut(s)	291, 643, 830
AflIII	ACRYGT	1 cut(s)	188
AgsI	TTSAA	4 cut(s)	436, 560, 767, 899
AluBI	AGCT	7 cut(s)	76, 83, 172, 470, 886, 944, 1006
AluI	AGCT	7 cut(s)	76, 83, 172, 470, 886, 944, 1006
Alw21I	GWGCWC	2 cut(s)	174, 976
Alw26I	GTCTC	2 cut(s)	582, 629
AlwI	GGATC	3 cut(s)	343, 387, 734
AoxI	GGCC	6 cut(s)	19, 112, 158, 276, 781, 921
ApeKI	GCWGC	1 cut(s)	467
ArsI	GACNNNNNNTTYG	2 cut(s)	581, 613
Asp700I	GAANNNNTTC	1 cut(s)	398
AspLEI	GCGC	1 cut(s)	363
AspS9I	GGNCC	6 cut(s)	158, 276, 517, 921, 926, 992
AsuC2I	CCSGG	1 cut(s)	920
AsuHPI	GGTGA	3 cut(s)	185, 254, 812
AvaII	GGWCC	3 cut(s)	517, 926, 992
AxyI	CCTNAGG	1 cut(s)	641
BaeI	ACNNNNGTAYC	1 cut(s)	30
BanII	GRGCYC	1 cut(s)	174
Bbv12I	GWGCWC	2 cut(s)	174, 976
BbvI	GCAGC	1 cut(s)	479
BclI	TGATCA	1 cut(s)	511
BcnI	CCSGG	1 cut(s)	920
BcoDI	GTCTC	2 cut(s)	582, 629
BfaI	CTAG	1 cut(s)	116
BfuAI	ACCTGC	1 cut(s)	213
BisI	GCNGC	3 cut(s)	22, 279, 468
BlsI	GCNGC	3 cut(s)	23, 280, 469
Bme1390I	CCNGG	1 cut(s)	920
Bme18I	GGWCC	3 cut(s)	517, 926, 992
BmgT120I	GGNCC	6 cut(s)	158, 276, 517, 921, 926, 992
BmiI	GGNNCC	1 cut(s)	519
BmrFI	CCNGG	1 cut(s)	920
BmsI	GCATC	3 cut(s)	112, 243, 538
BplI	GAGNNNNNCTC	4 cut(s)	469, 501, 579, 611
BpmI	CTGGAG	1 cut(s)	990
BpuEI	CTTGAG	1 cut(s)	611
BpuMI	CCSGG	1 cut(s)	920
BsaBI	GATNNNNATC	1 cut(s)	607
BsaI	GGTCTC	2 cut(s)	582, 629
BsaJI	CCNNGG	2 cut(s)	229, 352
Bsc4I	CCNNNNNNNGG	3 cut(s)	291, 643, 830
Bse118I	RCCGGY	2 cut(s)	125, 923
Bse1I	ACTGG	2 cut(s)	49, 973
Bse21I	CCTNAGG	1 cut(s)	641
Bse8I	GATNNNNATC	1 cut(s)	607
BseDI	CCNNGG	2 cut(s)	229, 352
BseJI	GATNNNNATC	1 cut(s)	607
BseLI	CCNNNNNNNGG	3 cut(s)	291, 643, 830
BseMII	CTCAG	3 cut(s)	24, 750, 1091
BseNI	ACTGG	2 cut(s)	49, 973
BseRI	GAGGAG	1 cut(s)	1017
BseXI	GCAGC	1 cut(s)	479
Bsh1236I	CGCG	1 cut(s)	281
Bsh1285I	CGRYCG	1 cut(s)	64
BshFI	GGCC	6 cut(s)	21, 114, 160, 278, 783, 923
BsiEI	CGRYCG	1 cut(s)	64
BsiHKAI	GWGCWC	2 cut(s)	174, 976
BsiSI	CCGG	3 cut(s)	126, 919, 924
BslFI	GGGAC	2 cut(s)	308, 494
BslI	CCNNNNNNNGG	3 cut(s)	291, 643, 830
BsmAI	GTCTC	2 cut(s)	582, 629
BsmFI	GGGAC	2 cut(s)	308, 494
BsnI	GGCC	6 cut(s)	21, 114, 160, 278, 783, 923
Bso31I	GGTCTC	2 cut(s)	582, 629
Bsp1286I	GDGCHC	2 cut(s)	174, 976
Bsp1407I	TGTACA	1 cut(s)	453
Bsp143I	GATC	8 cut(s)	223, 244, 348, 379, 412, 448, 511, 739
BspACI	CCGC	2 cut(s)	22, 279
BspANI	GGCC	6 cut(s)	21, 114, 160, 278, 783, 923
BspCNI	CTCAG	3 cut(s)	23, 749, 1090
BspFNI	CGCG	1 cut(s)	281
BspHI	TCATGA	2 cut(s)	370, 796
BspLI	GGNNCC	1 cut(s)	519
BspMI	ACCTGC	1 cut(s)	213
BspPI	GGATC	3 cut(s)	343, 387, 734
BspTNI	GGTCTC	2 cut(s)	582, 629
BsrFI	RCCGGY	2 cut(s)	125, 923
BsrGI	TGTACA	1 cut(s)	453
BsrI	ACTGG	2 cut(s)	49, 973
BssAI	RCCGGY	2 cut(s)	125, 923
BssECI	CCNNGG	2 cut(s)	229, 352
BssMI	GATC	8 cut(s)	223, 244, 348, 379, 412, 448, 511, 739
BssT1I	CCWWGG	2 cut(s)	229, 352
Bst4CI	ACNGT	3 cut(s)	242, 334, 427
Bst6I	CTCTTC	2 cut(s)	602, 1011
BstAUI	TGTACA	1 cut(s)	453
BstC8I	GCNNGC	6 cut(s)	127, 174, 697, 731, 912, 946
BstDEI	CTNAG	5 cut(s)	10, 641, 736, 838, 1077
BstENI	CCTNNNNNAGG	1 cut(s)	828
BstFNI	CGCG	1 cut(s)	281
BstHHI	GCGC	1 cut(s)	363
BstKTI	GATC	8 cut(s)	226, 247, 351, 382, 415, 451, 514, 742
BstMAI	GTCTC	2 cut(s)	582, 629
BstMBI	GATC	8 cut(s)	223, 244, 348, 379, 412, 448, 511, 739
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	1 cut(s)	920
BstNSI	RCATGY	3 cut(s)	192, 575, 699
BstSCI	CCNGG	1 cut(s)	918
BstUI	CGCG	1 cut(s)	281
BstV1I	GCAGC	1 cut(s)	479
BstX2I	RGATCY	2 cut(s)	379, 739
BstXI	CCANNNNNNTGG	1 cut(s)	779
BstYI	RGATCY	2 cut(s)	379, 739
Bsu36I	CCTNAGG	1 cut(s)	641
BsuRI	GGCC	6 cut(s)	21, 114, 160, 278, 783, 923
BveI	ACCTGC	1 cut(s)	213
Cac8I	GCNNGC	6 cut(s)	127, 174, 697, 731, 912, 946
CciI	TCATGA	2 cut(s)	370, 796
CfoI	GCGC	1 cut(s)	363
Cfr10I	RCCGGY	2 cut(s)	125, 923
Cfr13I	GGNCC	6 cut(s)	158, 276, 517, 921, 926, 992
CseI	GACGC	1 cut(s)	270
Csp6I	GTAC	2 cut(s)	140, 454
CviAII	CATG	9 cut(s)	38, 137, 189, 291, 317, 371, 572, 696, 797
CviQI	GTAC	2 cut(s)	140, 454
DdeI	CTNAG	5 cut(s)	10, 641, 736, 838, 1077
DpnI	GATC	8 cut(s)	225, 246, 350, 381, 414, 450, 513, 741
DpnII	GATC	8 cut(s)	223, 244, 348, 379, 412, 448, 511, 739
EaeI	YGGCCR	1 cut(s)	19
Eam1104I	CTCTTC	2 cut(s)	602, 1011
EarI	CTCTTC	2 cut(s)	602, 1011
Ecl136II	GAGCTC	1 cut(s)	172
Eco130I	CCWWGG	2 cut(s)	229, 352
Eco147I	AGGCCT	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	174
Eco31I	GGTCTC	2 cut(s)	582, 629
Eco47I	GGWCC	3 cut(s)	517, 926, 992
Eco53kI	GAGCTC	1 cut(s)	172
Eco57I	CTGAAG	3 cut(s)	519, 848, 872
Eco81I	CCTNAGG	1 cut(s)	641
EcoICRI	GAGCTC	1 cut(s)	172
EcoNI	CCTNNNNNAGG	1 cut(s)	828
EcoO109I	RGGNCCY	1 cut(s)	517
EcoT14I	CCWWGG	2 cut(s)	229, 352
EcoT38I	GRGCYC	1 cut(s)	174
ErhI	CCWWGG	2 cut(s)	229, 352
FaeI	CATG	9 cut(s)	41, 140, 192, 294, 320, 374, 575, 699, 800
FaqI	GGGAC	2 cut(s)	308, 494
FatI	CATG	9 cut(s)	37, 136, 188, 290, 316, 370, 571, 695, 796
FbaI	TGATCA	1 cut(s)	511
Fnu4HI	GCNGC	3 cut(s)	22, 279, 468
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	3 cut(s)	22, 279, 468
FspBI	CTAG	1 cut(s)	116
FspI	TGCGCA	1 cut(s)	362
GlaI	GCGC	1 cut(s)	362
GluI	GCNGC	3 cut(s)	22, 279, 468
GsuI	CTGGAG	1 cut(s)	990
HaeIII	GGCC	6 cut(s)	21, 114, 160, 278, 783, 923
HapII	CCGG	3 cut(s)	126, 919, 924
HgaI	GACGC	1 cut(s)	270
HhaI	GCGC	1 cut(s)	363
Hin1II	CATG	9 cut(s)	41, 140, 192, 294, 320, 374, 575, 699, 800
Hin6I	GCGC	1 cut(s)	361
HinP1I	GCGC	1 cut(s)	361
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HindIII	AAGCTT	2 cut(s)	81, 884
HinfI	GANTC	1 cut(s)	432
HpaII	CCGG	3 cut(s)	126, 919, 924
HphI	GGTGA	3 cut(s)	185, 254, 812
Hpy166II	GTNNAC	2 cut(s)	313, 820
Hpy188I	TCNGA	7 cut(s)	286, 431, 602, 613, 739, 891, 1015
Hpy188III	TCNNGA	8 cut(s)	371, 383, 416, 515, 767, 797, 1045, 1103
Hpy8I	GTNNAC	2 cut(s)	313, 820
HpyAV	CCTTC	2 cut(s)	543, 753
HpyCH4III	ACNGT	3 cut(s)	242, 334, 427
HpyCH4V	TGCA	4 cut(s)	208, 497, 551, 914
HpyF10VI	GCNNNNNNNGC	1 cut(s)	920
HpyF3I	CTNAG	5 cut(s)	10, 641, 736, 838, 1077
Hsp92II	CATG	9 cut(s)	41, 140, 192, 294, 320, 374, 575, 699, 800
HspAI	GCGC	1 cut(s)	361
KroI	GCCGGC	1 cut(s)	125
KroNI	GCCGGC	1 cut(s)	127
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	8 cut(s)	223, 244, 348, 379, 412, 448, 511, 739
LmnI	GCTCC	1 cut(s)	971
Lsp1109I	GCAGC	1 cut(s)	479
LweI	GCATC	3 cut(s)	112, 243, 538
MaeI	CTAG	1 cut(s)	116
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	8 cut(s)	225, 246, 350, 381, 414, 450, 513, 741
MboI	GATC	8 cut(s)	223, 244, 348, 379, 412, 448, 511, 739
MboII	GAAGA	7 cut(s)	403, 589, 752, 755, 785, 854, 1028
MflI	RGATCY	2 cut(s)	379, 739
MhlI	GDGCHC	2 cut(s)	174, 976
MluCI	AATT	6 cut(s)	442, 472, 555, 647, 756, 774
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	7 cut(s)	19, 471, 607, 761, 794, 1035, 1038
MroNI	GCCGGC	1 cut(s)	125
MroXI	GAANNNNTTC	1 cut(s)	398
MseI	TTAA	1 cut(s)	813
MspI	CCGG	3 cut(s)	126, 919, 924
MspR9I	CCNGG	1 cut(s)	920
MvnI	CGCG	1 cut(s)	281
MwoI	GCNNNNNNNGC	1 cut(s)	920
NaeI	GCCGGC	1 cut(s)	127
NciI	CCSGG	1 cut(s)	920
NdeII	GATC	8 cut(s)	223, 244, 348, 379, 412, 448, 511, 739
NgoMIV	GCCGGC	1 cut(s)	125
NlaIII	CATG	9 cut(s)	41, 140, 192, 294, 320, 374, 575, 699, 800
NlaIV	GGNNCC	1 cut(s)	519
NmuCI	GTSAC	1 cut(s)	191
NsbI	TGCGCA	1 cut(s)	362
NspI	RCATGY	3 cut(s)	192, 575, 699
PaeI	GCATGC	1 cut(s)	699
PagI	TCATGA	2 cut(s)	370, 796
PceI	AGGCCT	1 cut(s)	114
PciI	ACATGT	1 cut(s)	188
PdiI	GCCGGC	1 cut(s)	127
PdmI	GAANNNNTTC	1 cut(s)	398
PfeI	GAWTC	1 cut(s)	432
PkrI	GCNGC	3 cut(s)	23, 280, 469
PpuMI	RGGWCCY	1 cut(s)	517
PscI	ACATGT	1 cut(s)	188
Psp124BI	GAGCTC	1 cut(s)	174
Psp5II	RGGWCCY	1 cut(s)	517
PspN4I	GGNNCC	1 cut(s)	519
PspPI	GGNCC	6 cut(s)	158, 276, 517, 921, 926, 992
PspPPI	RGGWCCY	1 cut(s)	517
PsuI	RGATCY	2 cut(s)	379, 739
RsaI	GTAC	2 cut(s)	141, 455
RsaNI	GTAC	2 cut(s)	140, 454
SacI	GAGCTC	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	813
SatI	GCNGC	3 cut(s)	22, 279, 468
Sau3AI	GATC	8 cut(s)	223, 244, 348, 379, 412, 448, 511, 739
Sau96I	GGNCC	6 cut(s)	158, 276, 517, 921, 926, 992
ScrFI	CCNGG	1 cut(s)	920
SduI	GDGCHC	2 cut(s)	174, 976
SfaNI	GCATC	3 cut(s)	112, 243, 538
SinI	GGWCC	3 cut(s)	517, 926, 992
SmlI	CTYRAG	1 cut(s)	626
SmoI	CTYRAG	1 cut(s)	626
SphI	GCATGC	1 cut(s)	699
Sse9I	AATT	6 cut(s)	442, 472, 555, 647, 756, 774
SseBI	AGGCCT	1 cut(s)	114
SsiI	CCGC	2 cut(s)	22, 279
SspI	AATATT	2 cut(s)	850, 1058
SspMI	CTAG	1 cut(s)	116
SstI	GAGCTC	1 cut(s)	174
StuI	AGGCCT	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	918
StyI	CCWWGG	2 cut(s)	229, 352
TaaI	ACNGT	3 cut(s)	242, 334, 427
TaqI	TCGA	1 cut(s)	415
TaqII	GACCGA	1 cut(s)	78
TasI	AATT	6 cut(s)	442, 472, 555, 647, 756, 774
TatI	WGTACW	1 cut(s)	453
TauI	GCSGC	2 cut(s)	24, 281
TfiI	GAWTC	1 cut(s)	432
Tru1I	TTAA	1 cut(s)	813
Tru9I	TTAA	1 cut(s)	813
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	1 cut(s)	467
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	7 cut(s)	57, 125, 142, 282, 333, 359, 785
VpaK11BI	GGWCC	3 cut(s)	517, 926, 992
XagI	CCTNNNNNAGG	1 cut(s)	828
XceI	RCATGY	3 cut(s)	192, 575, 699
XmnI	GAANNNNTTC	1 cut(s)	398
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.