Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0014710

Physical Location & Seq

Genomic Coordinates Reverse (-)

5633801 .. 5635316

Gene Structure 1516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g06330.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGCAACCAGAGGAGGAAGAAAACGCTCCAGACTCGGACCTATTTCGAACGCAGCTCAGGTGGGCAACTCCGAAGATCTCGTGATCGAGATCCTACTGCGCCTCCCAGCTAAGCCACTTCTCATGTTCAAATCAGTTTCAAAACAATGGTACTCCATAATCTCTAACCCTGAATTTACTGTCACTTGTGCCAAAAGAAACCCAAACCCTCAGCTGGGGTTTCTGTTGGATGCTCGATTCAATTTCCAACCACACCCACGCCCCCTCTTCCTTTCTCTGGGTGGCTATCAATATGGGAAACACCCAAGTTTCCTTGATAGCCCACATCTTGAAATTCACCATCTCTGTAATGGGTTGTTGTGCTATTCTAAGCCCCATTTGAGTTCCCCTCAAATCACTTCTTATTATGTTTGCAATCATTCATCTGGGCAATCGAAATGGCTTCGGGTTCTTGGAAGCCCTGACAATGAAAGAGTGAAGGCTTTTAATGTGGCAGTTGATCCTTTGCTATCACCACATTACAGGCTCGTTTTTGTTAGTGAATTGTCTGTGGTAGACGAGTACCGTCTTATCAAAATTGATATCTACTCGTCTAAGACCAAGTCTTGGAGAGCCTCCACAAAGGGGATTTACATTTTGCAATACGATATTGGGTTTCACATTTCAGTTTACTGGAGGGATGCAATTTACTGGTACAATCAGAACAATCAGTCTTTGGCGTATTTCGATTTCAACGACGACAGTGTGGAGATTTTGCCAAAGCCACAGGTTACAGAAACCATGACTTATTACTACTTTGGAGAGTCAGGCGGGCATTTGCATCTTGTGGGCAGTTGGAGACCCTGGACTAGTTTGTTAACTGTCTTCGAAATGCTGGAAGATAGGTCTGGGTGGTTTGTGAAGTATGATGGTGATTTTGGTGCTTTAGCTACTGCATATCCCAAGATGGTTACTAACAAACCAATTAGGCCTTATGTGTTTTCTGTGGTGAACCTGTTAAGAGGTAAGAAAGAAGGGGAGGTCATTATTGTGTTAGTAATCCCCGAAGGTGTGATTTGGTATAATGTCCGGGATGAGACCTCAAAGAAGCTCTGCAATCTGTCTCTGAGTCAAAGCAAATTGCAGCAGATGAGGTTTAAAGCTCATCAATACATGGAGACCCTTGCTTCAATAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

393

Amino Acids

45.0

Weight (kDa)

9.18

Isoelectric Point (pI)

39.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	25 - 60	1.7e-07	F-box domain
FBA_1	PF07734	111 - 256	2.3e-08	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014710)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06290 FvH4_4g06330
malus_domestica	MD13G1235000.v1.1
prunus_persica	Prupe.1G066100_v2.0.a1 Prupe.1G066200_v2.0.a1
pyrus_communis	pycom13g20750
rosa_chinensis	RchiOBHm_Chr4g0398011
rosa_laevigata	RLG00000014125
rosa_roxburghii	Rroxscaffold_5G00342970
rosa_rugosa	Rorug04G0005500 Rorug06G0022700
rosa_samantha	Rh4AG082200 Rh4BG079700 Rh4DG075100 Rh6BG144300 Rh6DG128700
rosa_wichuraiana	Rw4G006860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	606
AccI	GTMKAC	1 cut(s)	555
AciI	CCGC	1 cut(s)	810
AclWI	GGATC	2 cut(s)	85, 494
AcsI	RAATTY	2 cut(s)	173, 333
AfaI	GTAC	3 cut(s)	152, 563, 695
AfiI	CCNNNNNNNGG	5 cut(s)	214, 215, 277, 606, 624
AgsI	TTSAA	6 cut(s)	130, 141, 241, 332, 733, 1170
AhlI	ACTAGT	1 cut(s)	848
AjnI	CCWGG	1 cut(s)	842
AluBI	AGCT	6 cut(s)	56, 110, 214, 929, 1090, 1142
AluI	AGCT	6 cut(s)	56, 110, 214, 929, 1090, 1142
Alw26I	GTCTC	4 cut(s)	832, 1070, 1107, 1151
AlwI	GGATC	2 cut(s)	85, 494
AoxI	GGCC	1 cut(s)	968
ApeKI	GCWGC	2 cut(s)	53, 1123
ApoI	RAATTY	2 cut(s)	173, 333
AspLEI	GCGC	1 cut(s)	102
AspS9I	GGNCC	1 cut(s)	38
AsuC2I	CCSGG	1 cut(s)	1070
AsuHPI	GGTGA	4 cut(s)	329, 504, 923, 1000
AsuII	TTCGAA	2 cut(s)	47, 867
AvaII	GGWCC	1 cut(s)	38
BauI	CACGAG	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	856
BbvCI	CCTCAGC	1 cut(s)	210
BbvI	GCAGC	2 cut(s)	65, 1135
BccI	CCATC	3 cut(s)	348, 902, 940
BciT130I	CCWGG	1 cut(s)	844
BcnI	CCSGG	1 cut(s)	1070
BcoDI	GTCTC	4 cut(s)	832, 1070, 1107, 1151
BcuI	ACTAGT	1 cut(s)	848
BfaI	CTAG	1 cut(s)	849
BglII	AGATCT	1 cut(s)	76
BisI	GCNGC	2 cut(s)	54, 1124
BlpI	GCTNAGC	1 cut(s)	111
BlsI	GCNGC	2 cut(s)	55, 1125
Bme1390I	CCNGG	2 cut(s)	844, 1070
Bme18I	GGWCC	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	38
BmrFI	CCNGG	2 cut(s)	844, 1070
BmsI	GCATC	3 cut(s)	220, 670, 829
BpiI	GAAGAC	1 cut(s)	856
BplI	GAGNNNNNCTC	2 cut(s)	373, 405
BpmI	CTGGAG	2 cut(s)	13, 694
Bpu10I	CCTNAGC	2 cut(s)	57, 210
Bpu1102I	GCTNAGC	1 cut(s)	111
Bpu14I	TTCGAA	2 cut(s)	47, 867
BpuMI	CCSGG	1 cut(s)	1070
BsaBI	GATNNNNATC	1 cut(s)	89
BsaI	GGTCTC	3 cut(s)	832, 1070, 1151
BsaJI	CCNNGG	1 cut(s)	842
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bsc4I	CCNNNNNNNGG	5 cut(s)	214, 215, 277, 606, 624
Bse1I	ACTGG	2 cut(s)	677, 695
Bse8I	GATNNNNATC	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	844
BseDI	CCNNGG	1 cut(s)	842
BseGI	GGATG	3 cut(s)	235, 685, 1078
BseJI	GATNNNNATC	1 cut(s)	89
BseLI	CCNNNNNNNGG	5 cut(s)	214, 215, 277, 606, 624
BseMII	CTCAG	3 cut(s)	71, 224, 1097
BseNI	ACTGG	2 cut(s)	677, 695
BseRI	GAGGAG	1 cut(s)	27
BseXI	GCAGC	2 cut(s)	65, 1135
BseYI	CCCAGC	2 cut(s)	106, 214
BshFI	GGCC	1 cut(s)	970
BsiSI	CCGG	1 cut(s)	1069
BslI	CCNNNNNNNGG	5 cut(s)	214, 215, 277, 606, 624
BsmAI	GTCTC	4 cut(s)	832, 1070, 1107, 1151
BsnI	GGCC	1 cut(s)	970
Bso31I	GGTCTC	3 cut(s)	832, 1070, 1151
Bsp119I	TTCGAA	2 cut(s)	47, 867
Bsp143I	GATC	4 cut(s)	76, 84, 90, 499
Bsp1720I	GCTNAGC	1 cut(s)	111
BspACI	CCGC	1 cut(s)	810
BspANI	GGCC	1 cut(s)	970
BspCNI	CTCAG	3 cut(s)	70, 223, 1098
BspPI	GGATC	2 cut(s)	85, 494
BspT104I	TTCGAA	2 cut(s)	47, 867
BspTNI	GGTCTC	3 cut(s)	832, 1070, 1151
BsrI	ACTGG	2 cut(s)	677, 695
BssECI	CCNNGG	1 cut(s)	842
BssMI	GATC	4 cut(s)	76, 84, 90, 499
BssSI	CACGAG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	80
Bst2UI	CCWGG	1 cut(s)	844
Bst4CI	ACNGT	4 cut(s)	181, 566, 743, 862
Bst6I	CTCTTC	1 cut(s)	272
BstBI	TTCGAA	2 cut(s)	47, 867
BstC8I	GCNNGC	1 cut(s)	812
BstDEI	CTNAG	6 cut(s)	57, 111, 210, 369, 594, 1106
BstF5I	GGATG	3 cut(s)	235, 685, 1078
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	4 cut(s)	79, 87, 93, 502
BstMAI	GTCTC	4 cut(s)	832, 1070, 1107, 1151
BstMBI	GATC	4 cut(s)	76, 84, 90, 499
BstNI	CCWGG	1 cut(s)	844
BstSCI	CCNGG	2 cut(s)	842, 1068
BstV1I	GCAGC	2 cut(s)	65, 1135
BstV2I	GAAGAC	1 cut(s)	856
BstX2I	RGATCY	2 cut(s)	76, 90
BstYI	RGATCY	2 cut(s)	76, 90
BsuRI	GGCC	1 cut(s)	970
BtsCI	GGATG	3 cut(s)	235, 685, 1078
BtsIMutI	CAGTG	1 cut(s)	748
Cac8I	GCNNGC	1 cut(s)	812
CfoI	GCGC	1 cut(s)	102
Cfr13I	GGNCC	1 cut(s)	38
Csp6I	GTAC	3 cut(s)	151, 562, 694
CviAII	CATG	4 cut(s)	124, 781, 1153, 1176
CviQI	GTAC	3 cut(s)	151, 562, 694
DdeI	CTNAG	6 cut(s)	57, 111, 210, 369, 594, 1106
DpnI	GATC	4 cut(s)	78, 86, 92, 501
DpnII	GATC	4 cut(s)	76, 84, 90, 499
DraI	TTTAAA	1 cut(s)	1138
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Eco147I	AGGCCT	1 cut(s)	970
Eco31I	GGTCTC	3 cut(s)	832, 1070, 1151
Eco32I	GATATC	1 cut(s)	583
Eco47I	GGWCC	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	842
EcoRV	GATATC	1 cut(s)	583
FaeI	CATG	4 cut(s)	127, 784, 1156, 1179
FatI	CATG	4 cut(s)	123, 780, 1152, 1175
FauI	CCCGC	1 cut(s)	803
FblI	GTMKAC	1 cut(s)	555
Fnu4HI	GCNGC	2 cut(s)	54, 1124
FokI	GGATG	3 cut(s)	242, 692, 1085
Fsp4HI	GCNGC	2 cut(s)	54, 1124
FspBI	CTAG	1 cut(s)	849
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	2 cut(s)	54, 1124
GsaI	CCCAGC	2 cut(s)	110, 218
GsuI	CTGGAG	2 cut(s)	13, 694
HaeIII	GGCC	1 cut(s)	970
HapII	CCGG	1 cut(s)	1069
HhaI	GCGC	1 cut(s)	102
Hin1II	CATG	4 cut(s)	127, 784, 1156, 1179
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HincII	GTYRAC	1 cut(s)	858
HindII	GTYRAC	1 cut(s)	858
HinfI	GANTC	4 cut(s)	33, 237, 803, 1108
HpaI	GTTAAC	1 cut(s)	858
HpaII	CCGG	1 cut(s)	1069
HphI	GGTGA	4 cut(s)	329, 504, 923, 1000
Hpy166II	GTNNAC	4 cut(s)	556, 670, 858, 991
Hpy188I	TCNGA	4 cut(s)	38, 73, 702, 1107
Hpy188III	TCNNGA	4 cut(s)	30, 82, 88, 329
Hpy8I	GTNNAC	4 cut(s)	556, 670, 858, 991
Hpy99I	CGWCG	1 cut(s)	740
HpyAV	CCTTC	3 cut(s)	472, 1007, 1040
HpyCH4III	ACNGT	4 cut(s)	181, 566, 743, 862
HpyCH4V	TGCA	7 cut(s)	414, 640, 683, 820, 935, 1095, 1123
HpyF3I	CTNAG	6 cut(s)	57, 111, 210, 369, 594, 1106
Hsp92II	CATG	4 cut(s)	127, 784, 1156, 1179
HspAI	GCGC	1 cut(s)	100
KspAI	GTTAAC	1 cut(s)	858
Kzo9I	GATC	4 cut(s)	76, 84, 90, 499
LmnI	GCTCC	1 cut(s)	32
Lsp1109I	GCAGC	2 cut(s)	65, 1135
LweI	GCATC	3 cut(s)	220, 670, 829
MaeI	CTAG	1 cut(s)	849
MaeIII	GTNAC	3 cut(s)	181, 769, 949
MalI	GATC	4 cut(s)	78, 86, 92, 501
MboI	GATC	4 cut(s)	76, 84, 90, 499
MboII	GAAGA	5 cut(s)	30, 86, 259, 856, 890
MflI	RGATCY	2 cut(s)	76, 90
MluCI	AATT	8 cut(s)	173, 241, 333, 542, 576, 684, 963, 1118
MlyI	GAGTC	3 cut(s)	27, 812, 1117
MmeI	TCCRAC	3 cut(s)	207, 271, 815
MseI	TTAA	4 cut(s)	486, 857, 998, 1137
MslI	CAYNNNNRTG	1 cut(s)	1028
MspA1I	CMGCKG	1 cut(s)	214
MspI	CCGG	1 cut(s)	1069
MspR9I	CCNGG	2 cut(s)	844, 1070
MvaI	CCWGG	1 cut(s)	844
NciI	CCSGG	1 cut(s)	1070
NdeII	GATC	4 cut(s)	76, 84, 90, 499
NlaIII	CATG	4 cut(s)	127, 784, 1156, 1179
NmuCI	GTSAC	1 cut(s)	181
NspV	TTCGAA	2 cut(s)	47, 867
PceI	AGGCCT	1 cut(s)	970
PcsI	WCGNNNNNNNCGW	1 cut(s)	732
PfeI	GAWTC	1 cut(s)	237
PflFI	GACNNNGTC	1 cut(s)	601
PflMI	CCANNNNNTGG	1 cut(s)	606
PfoI	TCCNGGA	1 cut(s)	1068
PkrI	GCNGC	2 cut(s)	55, 1125
PleI	GAGTC	3 cut(s)	27, 811, 1116
PpsI	GAGTC	3 cut(s)	27, 811, 1116
Psp6I	CCWGG	1 cut(s)	842
PspFI	CCCAGC	2 cut(s)	106, 214
PspGI	CCWGG	1 cut(s)	842
PspPI	GGNCC	1 cut(s)	38
PsuI	RGATCY	2 cut(s)	76, 90
PsyI	GACNNNGTC	1 cut(s)	601
PvuII	CAGCTG	1 cut(s)	214
RsaI	GTAC	3 cut(s)	152, 563, 695
RsaNI	GTAC	3 cut(s)	151, 562, 694
RseI	CAYNNNNRTG	1 cut(s)	1028
SaqAI	TTAA	4 cut(s)	486, 857, 998, 1137
SatI	GCNGC	2 cut(s)	54, 1124
Sau3AI	GATC	4 cut(s)	76, 84, 90, 499
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	3 cut(s)	27, 812, 1117
ScrFI	CCNGG	2 cut(s)	844, 1070
SfaNI	GCATC	3 cut(s)	220, 670, 829
SfuI	TTCGAA	2 cut(s)	47, 867
SinI	GGWCC	1 cut(s)	38
SmiMI	CAYNNNNRTG	1 cut(s)	1028
SpeI	ACTAGT	1 cut(s)	848
Sse9I	AATT	8 cut(s)	173, 241, 333, 542, 576, 684, 963, 1118
SseBI	AGGCCT	1 cut(s)	970
SsiI	CCGC	1 cut(s)	810
SspMI	CTAG	1 cut(s)	849
StuI	AGGCCT	1 cut(s)	970
StyD4I	CCNGG	2 cut(s)	842, 1068
TaaI	ACNGT	4 cut(s)	181, 566, 743, 862
TaqI	TCGA	6 cut(s)	47, 87, 235, 434, 726, 867
TasI	AATT	8 cut(s)	173, 241, 333, 542, 576, 684, 963, 1118
TfiI	GAWTC	1 cut(s)	237
Tru1I	TTAA	4 cut(s)	486, 857, 998, 1137
Tru9I	TTAA	4 cut(s)	486, 857, 998, 1137
TscAI	CASTG	1 cut(s)	748
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	2 cut(s)	53, 1123
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	2 cut(s)	411, 483
TspRI	CASTG	1 cut(s)	748
Tth111I	GACNNNGTC	1 cut(s)	601
Van91I	CCANNNNNTGG	1 cut(s)	606
VpaK11BI	GGWCC	1 cut(s)	38
XapI	RAATTY	2 cut(s)	173, 333
XcmI	CCANNNNNNNNNTGG	1 cut(s)	347
XmiI	GTMKAC	1 cut(s)	555
XspI	CTAG	1 cut(s)	849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.