pycom13g20750

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0014710
Physical Location & Seq
Forward (+)
16923590 .. 16925753
2164 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g20750.3

Sequence Viewer

Length: 1137 bp
ATGCGCATATCTACAATTACCGTACACGATAATATGCATATCTGGATTTACTATAGACGGGGAGGAGGAAGAAGCGGCAAAGCCACAGATTCTGGTGCAGCAGCTGCCGTGGCCAGCGCAGTTGACCTCCTGCTAGAGATCCTGATGCGCCTCCCGGCAAGACCCCTTCACCGATTCAAGTGCGTATCTAAACAATGGTACTCTCTCATCTCTGACCCCCAATTTAGAATCGATTACGTCCAAAAGAACCCTAATGATCTTTTGGGTTTGCTGCTGATTATTCAAGGTCCATACTCTGAATTTTCGTTCATTTCCCTTAGAGGCTGTGGCCAAATTGTTAAAGACCCAAAATTTTTAAGCACCCCCAATCTCAAAATTCATCATTTCTGTAATGGGTTGATGTGTTTTTCCAAGCCTCACATGGATTCACCTCAGTTTACTTCTTATTATGTTTGTAATTCTGCTTCCGGGCACTCGAAAAGAATTCGGGTTCTTGAGAGCTCGACCAGAAAGAGATTGATGGCTGTTAATGTGGCTTTTGATCCTTCAAAGTCACCCTTCTACAATGTCGTTTTTGTTAGTGAAGAATCCGGGTCGGAACTGAACCATCTGATCAAAATTGATATATACTCATCCGAGACCGAGGCTTGGAGACCCAGCAGCAAGGGGCTGTACATTGTGCCTTATGATGTGGATTTTGACAATGGGGTTTACTGGAATGGGGCAATTTATTGGTATCATCAAATGAAAAACTCTTTGGCATATTTTGATTTGGATACCGGTTGCCTTGAAAGATTACGAATGCCAGTGCTTTCTCTGGGATCGTATCCCATGGTTTTCGACCATTTTGGAGAATCAGGTGGCCATCTGCATCTTGTTGGGATCTGCAGTCCAAGGACTACTCTGTTCACTGTGTTTGAAATGCAGCAGGATAGGTCCGGTTGGTTTGTGAAGTGGTTAAGGCGCATCAATACATCGAGACCCTTGATTCCATCTGAAAGCTGTGCTTCTCTGATGCTCACTAGGTTTGTTGATTCAAAATTTGGATCCTCGTACGATAGAGAATATCATAAATGCAGTTCCTTCAGGTGTTGCTGCTACTGCTATAAAGAAGCAGGAATTGGGTTAACAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

379

Amino Acids

43.16

Weight (kDa)

8.93

Isoelectric Point (pI)

43.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014710)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g06290 FvH4_4g06330
malus_domestica MD13G1235000.v1.1
prunus_persica Prupe.1G066100_v2.0.a1 Prupe.1G066200_v2.0.a1
pyrus_communis pycom13g20750
rosa_chinensis RchiOBHm_Chr4g0398011
rosa_laevigata RLG00000014125
rosa_roxburghii Rroxscaffold_5G00342970
rosa_rugosa Rorug04G0005500 Rorug06G0022700
rosa_samantha Rh4AG082200 Rh4BG079700 Rh4DG075100 Rh6BG144300 Rh6DG128700
rosa_wichuraiana Rw4G006860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
AciI CCGC 1 cut(s) 75
AclWI GGATC 6 cut(s) 133, 536, 829, 890, 1041, 1054
AcoI YGGCCR 3 cut(s) 111, 328, 862
AcsI RAATTY 5 cut(s) 299, 350, 375, 483, 1040
AcuI CTGAAG 1 cut(s) 1069
AfaI GTAC 4 cut(s) 24, 200, 674, 1055
AfiI CCNNNNNNNGG 1 cut(s) 648
AgeI ACCGGT 1 cut(s) 779
AgsI TTSAA 6 cut(s) 178, 284, 549, 791, 920, 1038
AjuI GAANNNNNNNTTGG 4 cut(s) 740, 772, 1104, 1136
AluBI AGCT 3 cut(s) 104, 501, 1002
AluI AGCT 3 cut(s) 104, 501, 1002
Alw21I GWGCWC 1 cut(s) 503
Alw26I GTCTC 3 cut(s) 632, 646, 973
AlwI GGATC 6 cut(s) 133, 536, 829, 890, 1041, 1054
AlwNI CAGNNNCTG 2 cut(s) 92, 104
AoxI GGCC 3 cut(s) 111, 328, 862
ApeKI GCWGC 7 cut(s) 98, 101, 104, 271, 660, 925, 1095
ApoI RAATTY 5 cut(s) 299, 350, 375, 483, 1040
AsiGI ACCGGT 1 cut(s) 779
AspLEI GCGC 4 cut(s) 6, 119, 150, 966
AspS9I GGNCC 2 cut(s) 287, 936
AsuC2I CCSGG 3 cut(s) 155, 469, 592
AsuHPI GGTGA 3 cut(s) 161, 420, 546
AvaII GGWCC 2 cut(s) 287, 936
BaeGI GKGCMC 1 cut(s) 474
BalI TGGCCA 3 cut(s) 113, 330, 864
BamHI GGATCC 1 cut(s) 1046
BanII GRGCYC 1 cut(s) 503
BarI GAAGNNNNNNTAC 2 cut(s) 448, 480
Bbv12I GWGCWC 1 cut(s) 503
BbvI GCAGC 7 cut(s) 91, 110, 113, 258, 672, 937, 1082
BccI CCATC 4 cut(s) 514, 615, 873, 1000
BceAI ACGGC 1 cut(s) 92
BcgI CGANNNNNNTGC 2 cut(s) 162, 196
BciVI GTATCC 2 cut(s) 769, 837
BclI TGATCA 1 cut(s) 612
BcnI CCSGG 3 cut(s) 155, 469, 592
BcoDI GTCTC 3 cut(s) 632, 646, 973
BfaI CTAG 2 cut(s) 134, 1023
BfmI CTRYAG 2 cut(s) 52, 886
BfuI GTATCC 2 cut(s) 769, 837
BisI GCNGC 8 cut(s) 76, 99, 102, 105, 272, 661, 926, 1096
BlsI GCNGC 8 cut(s) 77, 100, 103, 106, 273, 662, 927, 1097
Bme1390I CCNGG 3 cut(s) 155, 469, 592
Bme18I GGWCC 2 cut(s) 287, 936
BmgT120I GGNCC 2 cut(s) 287, 936
BmiI GGNNCC 1 cut(s) 1048
BmrFI CCNGG 3 cut(s) 155, 469, 592
BmsI GCATC 4 cut(s) 135, 880, 975, 1005
BpuEI CTTGAG 1 cut(s) 515
BpuMI CCSGG 3 cut(s) 155, 469, 592
Bsa29I ATCGAT 1 cut(s) 231
BsaI GGTCTC 3 cut(s) 632, 646, 973
BsaJI CCNNGG 4 cut(s) 108, 642, 831, 893
BsaWI WCCGGW 2 cut(s) 779, 938
Bsc4I CCNNNNNNNGG 1 cut(s) 648
Bse118I RCCGGY 1 cut(s) 779
Bse1I ACTGG 2 cut(s) 719, 806
BseCI ATCGAT 1 cut(s) 231
BseDI CCNNGG 4 cut(s) 108, 642, 831, 893
BseGI GGATG 1 cut(s) 632
BseLI CCNNNNNNNGG 1 cut(s) 648
BseMII CTCAG 1 cut(s) 446
BseNI ACTGG 2 cut(s) 719, 806
BseRI GAGGAG 1 cut(s) 78
BseSI GKGCMC 1 cut(s) 474
BseXI GCAGC 7 cut(s) 91, 110, 113, 258, 672, 937, 1082
BseYI CCCAGC 1 cut(s) 656
BsgI GTGCAG 1 cut(s) 117
BshFI GGCC 3 cut(s) 113, 330, 864
BshTI ACCGGT 1 cut(s) 779
BshVI ATCGAT 1 cut(s) 231
BsiHKAI GWGCWC 1 cut(s) 503
BsiSI CCGG 5 cut(s) 155, 468, 591, 780, 939
BsiWI CGTACG 1 cut(s) 1053
BslI CCNNNNNNNGG 1 cut(s) 648
BsmAI GTCTC 3 cut(s) 632, 646, 973
BsmI GAATGC 1 cut(s) 807
BsnI GGCC 3 cut(s) 113, 330, 864
Bso31I GGTCTC 3 cut(s) 632, 646, 973
Bsp1286I GDGCHC 2 cut(s) 474, 503
Bsp1407I TGTACA 1 cut(s) 672
Bsp143I GATC 7 cut(s) 138, 256, 541, 612, 821, 882, 1046
Bsp19I CCATGG 1 cut(s) 831
BspACI CCGC 1 cut(s) 75
BspANI GGCC 3 cut(s) 113, 330, 864
BspCNI CTCAG 1 cut(s) 445
BspDI ATCGAT 1 cut(s) 231
BspLI GGNNCC 1 cut(s) 1048
BspMAI CTGCAG 1 cut(s) 890
BspPI GGATC 6 cut(s) 133, 536, 829, 890, 1041, 1054
BspTNI GGTCTC 3 cut(s) 632, 646, 973
BsrFI RCCGGY 1 cut(s) 779
BsrGI TGTACA 1 cut(s) 672
BsrI ACTGG 2 cut(s) 719, 806
BssAI RCCGGY 1 cut(s) 779
BssECI CCNNGG 4 cut(s) 108, 642, 831, 893
BssMI GATC 7 cut(s) 138, 256, 541, 612, 821, 882, 1046
BssT1I CCWWGG 2 cut(s) 831, 893
Bst4CI ACNGT 2 cut(s) 22, 913
BstAPI GCANNNNNTGC 1 cut(s) 104
BstAUI TGTACA 1 cut(s) 672
BstC8I GCNNGC 1 cut(s) 115
BstDEI CTNAG 2 cut(s) 317, 432
BstDSI CCRYGG 2 cut(s) 108, 831
BstF5I GGATG 1 cut(s) 632
BstHHI GCGC 4 cut(s) 6, 119, 150, 966
BstKTI GATC 7 cut(s) 141, 259, 544, 615, 824, 885, 1049
BstMAI GTCTC 3 cut(s) 632, 646, 973
BstMBI GATC 7 cut(s) 138, 256, 541, 612, 821, 882, 1046
BstMWI GCNNNNNNNGC 3 cut(s) 104, 110, 1101
BstSCI CCNGG 3 cut(s) 153, 467, 590
BstSFI CTRYAG 2 cut(s) 52, 886
BstSLI GKGCMC 1 cut(s) 474
BstV1I GCAGC 7 cut(s) 91, 110, 113, 258, 672, 937, 1082
BstX2I RGATCY 3 cut(s) 138, 882, 1046
BstYI RGATCY 3 cut(s) 138, 882, 1046
Bsu15I ATCGAT 1 cut(s) 231
BsuI GTATCC 2 cut(s) 769, 837
BsuRI GGCC 3 cut(s) 113, 330, 864
BsuTUI ATCGAT 1 cut(s) 231
BtgI CCRYGG 2 cut(s) 108, 831
BtsCI GGATG 1 cut(s) 632
BtsIMutI CAGTG 2 cut(s) 813, 909
Cac8I GCNNGC 1 cut(s) 115
CaiI CAGNNNCTG 2 cut(s) 92, 104
CfoI GCGC 4 cut(s) 6, 119, 150, 966
Cfr10I RCCGGY 1 cut(s) 779
Cfr13I GGNCC 2 cut(s) 287, 936
ClaI ATCGAT 1 cut(s) 231
Csp6I GTAC 4 cut(s) 23, 199, 673, 1054
CspAI ACCGGT 1 cut(s) 779
CviAII CATG 2 cut(s) 421, 832
CviQI GTAC 4 cut(s) 23, 199, 673, 1054
DdeI CTNAG 2 cut(s) 317, 432
DpnI GATC 7 cut(s) 140, 258, 543, 614, 823, 884, 1048
DpnII GATC 7 cut(s) 138, 256, 541, 612, 821, 882, 1046
EaeI YGGCCR 3 cut(s) 111, 328, 862
Ecl136II GAGCTC 1 cut(s) 501
Eco130I CCWWGG 2 cut(s) 831, 893
Eco24I GRGCYC 1 cut(s) 503
Eco31I GGTCTC 3 cut(s) 632, 646, 973
Eco47I GGWCC 2 cut(s) 287, 936
Eco53kI GAGCTC 1 cut(s) 501
Eco57I CTGAAG 1 cut(s) 1069
EcoICRI GAGCTC 1 cut(s) 501
EcoRI GAATTC 1 cut(s) 483
EcoT14I CCWWGG 2 cut(s) 831, 893
EcoT22I ATGCAT 1 cut(s) 39
EcoT38I GRGCYC 1 cut(s) 503
ErhI CCWWGG 2 cut(s) 831, 893
FaeI CATG 2 cut(s) 424, 835
FalI AAGNNNNNCTT 4 cut(s) 542, 574, 991, 1023
FatI CATG 2 cut(s) 420, 831
FbaI TGATCA 1 cut(s) 612
Fnu4HI GCNGC 8 cut(s) 76, 99, 102, 105, 272, 661, 926, 1096
FokI GGATG 1 cut(s) 619
FriOI GRGCYC 1 cut(s) 503
Fsp4HI GCNGC 8 cut(s) 76, 99, 102, 105, 272, 661, 926, 1096
FspAI RTGCGCAY 1 cut(s) 5
FspBI CTAG 2 cut(s) 134, 1023
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 4 cut(s) 5, 118, 149, 965
GluI GCNGC 8 cut(s) 76, 99, 102, 105, 272, 661, 926, 1096
GsaI CCCAGC 1 cut(s) 660
HaeIII GGCC 3 cut(s) 113, 330, 864
HapII CCGG 5 cut(s) 155, 468, 591, 780, 939
HhaI GCGC 4 cut(s) 6, 119, 150, 966
Hin1II CATG 2 cut(s) 424, 835
Hin6I GCGC 4 cut(s) 4, 117, 148, 964
HinP1I GCGC 4 cut(s) 4, 117, 148, 964
HincII GTYRAC 2 cut(s) 124, 1128
HindII GTYRAC 2 cut(s) 124, 1128
HinfI GANTC 8 cut(s) 89, 174, 228, 425, 587, 854, 988, 1034
HpaI GTTAAC 1 cut(s) 1128
HpaII CCGG 5 cut(s) 155, 468, 591, 780, 939
HphI GGTGA 3 cut(s) 161, 420, 546
Hpy166II GTNNAC 6 cut(s) 25, 124, 438, 712, 909, 1128
Hpy188I TCNGA 7 cut(s) 214, 298, 598, 612, 637, 997, 1014
Hpy188III TCNNGA 4 cut(s) 43, 142, 494, 978
Hpy8I GTNNAC 6 cut(s) 25, 124, 438, 712, 909, 1128
HpyAV CCTTC 4 cut(s) 176, 555, 568, 1093
HpyCH4III ACNGT 2 cut(s) 22, 913
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 6 cut(s) 37, 98, 871, 888, 925, 1077
HpyF10VI GCNNNNNNNGC 3 cut(s) 104, 110, 1101
HpyF3I CTNAG 2 cut(s) 317, 432
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 2 cut(s) 424, 835
HspAI GCGC 4 cut(s) 4, 117, 148, 964
Ksp22I TGATCA 1 cut(s) 612
KspAI GTTAAC 1 cut(s) 1128
Kzo9I GATC 7 cut(s) 138, 256, 541, 612, 821, 882, 1046
Lsp1109I GCAGC 7 cut(s) 91, 110, 113, 258, 672, 937, 1082
LweI GCATC 4 cut(s) 135, 880, 975, 1005
MaeI CTAG 2 cut(s) 134, 1023
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 1 cut(s) 552
MalI GATC 7 cut(s) 140, 258, 543, 614, 823, 884, 1048
MboI GATC 7 cut(s) 138, 256, 541, 612, 821, 882, 1046
MboII GAAGA 2 cut(s) 81, 596
MflI RGATCY 3 cut(s) 138, 882, 1046
MhlI GDGCHC 2 cut(s) 474, 503
MlsI TGGCCA 3 cut(s) 113, 330, 864
MluNI TGGCCA 3 cut(s) 113, 330, 864
MmeI TCCRAC 1 cut(s) 576
MnlI CCTC 9 cut(s) 56, 59, 137, 161, 314, 426, 441, 637, 1060
Mox20I TGGCCA 3 cut(s) 113, 330, 864
Mph1103I ATGCAT 1 cut(s) 39
MscI TGGCCA 3 cut(s) 113, 330, 864
MseI TTAA 5 cut(s) 339, 356, 528, 959, 1127
Msp20I TGGCCA 3 cut(s) 113, 330, 864
MspA1I CMGCKG 1 cut(s) 104
MspI CCGG 5 cut(s) 155, 468, 591, 780, 939
MspR9I CCNGG 3 cut(s) 155, 469, 592
Mva1269I GAATGC 1 cut(s) 807
MwoI GCNNNNNNNGC 3 cut(s) 104, 110, 1101
NciI CCSGG 3 cut(s) 155, 469, 592
NcoI CCATGG 1 cut(s) 831
NdeII GATC 7 cut(s) 138, 256, 541, 612, 821, 882, 1046
NlaIII CATG 2 cut(s) 424, 835
NlaIV GGNNCC 1 cut(s) 1048
NmuCI GTSAC 1 cut(s) 552
NsbI TGCGCA 1 cut(s) 5
NsiI ATGCAT 1 cut(s) 39
PctI GAATGC 1 cut(s) 807
PfeI GAWTC 8 cut(s) 89, 174, 228, 425, 587, 854, 988, 1034
Pfl23II CGTACG 1 cut(s) 1053
PinAI ACCGGT 1 cut(s) 779
PkrI GCNGC 8 cut(s) 77, 100, 103, 106, 273, 662, 927, 1097
Psp124BI GAGCTC 1 cut(s) 503
PspFI CCCAGC 1 cut(s) 656
PspLI CGTACG 1 cut(s) 1053
PspN4I GGNNCC 1 cut(s) 1048
PspPI GGNCC 2 cut(s) 287, 936
PstI CTGCAG 1 cut(s) 890
PstNI CAGNNNCTG 2 cut(s) 92, 104
PsuI RGATCY 3 cut(s) 138, 882, 1046
PvuII CAGCTG 1 cut(s) 104
RsaI GTAC 4 cut(s) 24, 200, 674, 1055
RsaNI GTAC 4 cut(s) 23, 199, 673, 1054
SacI GAGCTC 1 cut(s) 503
SaqAI TTAA 5 cut(s) 339, 356, 528, 959, 1127
SatI GCNGC 8 cut(s) 76, 99, 102, 105, 272, 661, 926, 1096
Sau3AI GATC 7 cut(s) 138, 256, 541, 612, 821, 882, 1046
Sau96I GGNCC 2 cut(s) 287, 936
ScrFI CCNGG 3 cut(s) 155, 469, 592
SduI GDGCHC 2 cut(s) 474, 503
SfaNI GCATC 4 cut(s) 135, 880, 975, 1005
SfcI CTRYAG 2 cut(s) 52, 886
SinI GGWCC 2 cut(s) 287, 936
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
SsiI CCGC 1 cut(s) 75
SspMI CTAG 2 cut(s) 134, 1023
SstI GAGCTC 1 cut(s) 503
StyD4I CCNGG 3 cut(s) 153, 467, 590
StyI CCWWGG 2 cut(s) 831, 893
TaaI ACNGT 2 cut(s) 22, 913
TaiI ACGT 1 cut(s) 240
TaqI TCGA 5 cut(s) 231, 476, 503, 840, 977
TaqII GACCGA 1 cut(s) 656
TatI WGTACW 1 cut(s) 672
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 8 cut(s) 89, 174, 228, 425, 587, 854, 988, 1034
Tru1I TTAA 5 cut(s) 339, 356, 528, 959, 1127
Tru9I TTAA 5 cut(s) 339, 356, 528, 959, 1127
TscAI CASTG 2 cut(s) 813, 916
TseFI GTSAC 1 cut(s) 552
TseI GCWGC 7 cut(s) 98, 101, 104, 271, 660, 925, 1095
Tsp45I GTSAC 1 cut(s) 552
TspDTI ATGAA 3 cut(s) 298, 368, 761
TspRI CASTG 2 cut(s) 813, 916
VpaK11BI GGWCC 2 cut(s) 287, 936
XapI RAATTY 5 cut(s) 299, 350, 375, 483, 1040
XcmI CCANNNNNNNNNTGG 1 cut(s) 418
XspI CTAG 2 cut(s) 134, 1023
Zsp2I ATGCAT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.