Prupe.1G066100_v2.0.a1

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014710
Physical Location & Seq
Forward (+)
4716335 .. 4717962
1628 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G066100.1

Sequence Viewer

Length: 1212 bp
ATGGGATCGGAGACGAGAACCAGAGCAAGAAGAAGAAGCTGCCAAGCCACAGATTTCGGTGCAACTGCAGTGGCCAGCTCAGTGGACCTCTTGGTAGAGATCCTGATGCGCCTTCCAGCAAAACCTCTCCTCAGATTCAAATGCGTATCCAAACAATGGTACTCTATAATCTCTGATCCTCAGTTTATTATCAATTATGCCCAAAGAAACTTAAAACCTCTTTTGGGTTTGTTGTTGAGTGGCCGTAAAGAACAATTAGGTCCATACCCAGAATTTTCTTTCATTTCCATTGGAGGCTATGGCAAAACTGGGAGAGTCCCAAAATTTCTTACCATCCCCAAATTGGAAATTCAAGACTTCTGTAATGGATTGATGTGCTATTCTAAGCCTCACATGGATGCCCCTCAGTTCACTTCTTATTATGTTTGTAATTCTGCATCTGGGCAATCCAAAAGAATCAGAGTTCTTGAAAGTCCATCCAGCAAGAGATTGATGGCTGTGAATTTGGCTTTTGATCCTTCAAAGTCACCTTTTTACAATGTGATTTTTGTCAGTGAAACATCTGGGTCAGAATTGAACCATCTGATCAAAATTGATATTTACTCCTCTAAGACTCAGACTTGGAGACCAAGCACAAAGGGGCTGTTCATTGTGCCTCATGATGTGGACTTTGGCAATGGGGTTTACTGGAATGGCGCGATTTATTGGTACCATCGAAAGAAGAACTCTTTAGCATATTTTGATTTTGAGGCTGACTGCCTGGAAAGGTTGCAAATGCCATTACTTTCTCAGGGATCGTACCCCATGAGTTTCGACTATTTTGGAGAGTCGGGCGGGCATTTGCATCTTGTTGGGACCTGCAGACCAGGCACTACTCTGTTCACTGTGTTTGAGATGGAGAAAGATAGGTCTGGCTGGTTTGTGAAGTGTAATGGTGATTTGGGTGATTTAACAACTACTTTCCCAAAGATGGTTACCCCCAGACTATCTAGGCGTTATTTGTTTTCTCCAGTGAGCCTGTTTAGAGGAGAAAAAGAAGAAGAGCTGAGTATTGTGCTAACAATACCTGGGAGTGTGGTCCAATATAACGCCAAGGATAAGACATCAAAGAAGCTCTGTGATCTGCCAAAAGGTTTCATTTTCAATGACTTTATGGGGCAAGGCTTTAGGTTTAAATCGCATCAGTACATGGAGACCCTTGCTTCCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

404

Amino Acids

45.73

Weight (kDa)

9.27

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014710)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g06290 FvH4_4g06330
malus_domestica MD13G1235000.v1.1
prunus_persica Prupe.1G066100_v2.0.a1 Prupe.1G066200_v2.0.a1
pyrus_communis pycom13g20750
rosa_chinensis RchiOBHm_Chr4g0398011
rosa_laevigata RLG00000014125
rosa_roxburghii Rroxscaffold_5G00342970
rosa_rugosa Rorug04G0005500 Rorug06G0022700
rosa_samantha Rh4AG082200 Rh4BG079700 Rh4DG075100 Rh6BG144300 Rh6DG128700
rosa_wichuraiana Rw4G006860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 866
Acc65I GGTACC 1 cut(s) 708
AccB1I GGYRCC 1 cut(s) 708
AccB7I CCANNNNNTGG 1 cut(s) 156
AccII CGCG 1 cut(s) 698
AciI CCGC 1 cut(s) 834
AclWI GGATC 5 cut(s) 13, 94, 170, 509, 802
AcoI YGGCCR 2 cut(s) 72, 241
AcsI RAATTY 4 cut(s) 272, 323, 348, 502
AfaI GTAC 4 cut(s) 161, 710, 800, 1187
AfiI CCNNNNNNNGG 4 cut(s) 156, 224, 343, 970
AgsI TTSAA 6 cut(s) 139, 353, 470, 522, 577, 1144
AjnI CCWGG 3 cut(s) 759, 865, 1066
AluBI AGCT 4 cut(s) 39, 78, 1045, 1114
AluI AGCT 4 cut(s) 39, 78, 1045, 1114
Alw26I GTCTC 3 cut(s) 5, 619, 1187
AlwI GGATC 5 cut(s) 13, 94, 170, 509, 802
AoxI GGCC 2 cut(s) 72, 241
ApeKI GCWGC 1 cut(s) 39
ApoI RAATTY 4 cut(s) 272, 323, 348, 502
Asp718I GGTACC 1 cut(s) 708
AspLEI GCGC 2 cut(s) 111, 698
AspS9I GGNCC 4 cut(s) 85, 260, 855, 1078
AsuHPI GGTGA 3 cut(s) 519, 947, 956
AvaII GGWCC 4 cut(s) 85, 260, 855, 1078
BalI TGGCCA 1 cut(s) 74
BanI GGYRCC 1 cut(s) 708
BbvI GCAGC 1 cut(s) 26
BccI CCATC 7 cut(s) 341, 484, 487, 588, 720, 889, 964
BceAI ACGGC 1 cut(s) 228
BciT130I CCWGG 3 cut(s) 761, 867, 1068
BciVI GTATCC 1 cut(s) 157
BclI TGATCA 1 cut(s) 585
BcoDI GTCTC 3 cut(s) 5, 619, 1187
BfaI CTAG 1 cut(s) 990
BfmI CTRYAG 2 cut(s) 66, 859
BfuAI ACCTGC 1 cut(s) 866
BfuI GTATCC 1 cut(s) 157
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
Bme1390I CCNGG 3 cut(s) 761, 867, 1068
Bme18I GGWCC 4 cut(s) 85, 260, 855, 1078
BmgT120I GGNCC 4 cut(s) 85, 260, 855, 1078
BmiI GGNNCC 2 cut(s) 710, 856
BmrFI CCNGG 3 cut(s) 761, 867, 1068
BmrI ACTGGG 1 cut(s) 318
BmsI GCATC 5 cut(s) 96, 388, 446, 853, 1189
BmuI ACTGGG 1 cut(s) 318
BpmI CTGGAG 1 cut(s) 993
BsaI GGTCTC 2 cut(s) 619, 1187
BsaJI CCNNGG 2 cut(s) 1067, 1092
Bsc4I CCNNNNNNNGG 4 cut(s) 156, 224, 343, 970
Bse1I ACTGG 3 cut(s) 313, 692, 1010
Bse3DI GCAATG 1 cut(s) 682
BseBI CCWGG 3 cut(s) 761, 867, 1068
BseDI CCNNGG 2 cut(s) 1067, 1092
BseGI GGATG 3 cut(s) 333, 403, 476
BseLI CCNNNNNNNGG 4 cut(s) 156, 224, 343, 970
BseMI GCAATG 1 cut(s) 682
BseMII CTCAG 7 cut(s) 93, 145, 194, 419, 629, 803, 1037
BseNI ACTGG 3 cut(s) 313, 692, 1010
BseRI GAGGAG 3 cut(s) 119, 595, 1041
BseXI GCAGC 1 cut(s) 26
Bsh1236I CGCG 1 cut(s) 698
BshFI GGCC 2 cut(s) 74, 243
BshNI GGYRCC 1 cut(s) 708
BslFI GGGAC 2 cut(s) 302, 868
BslI CCNNNNNNNGG 4 cut(s) 156, 224, 343, 970
BsmAI GTCTC 3 cut(s) 5, 619, 1187
BsmBI CGTCTC 1 cut(s) 5
BsmFI GGGAC 2 cut(s) 302, 868
BsnI GGCC 2 cut(s) 74, 243
Bso31I GGTCTC 2 cut(s) 619, 1187
Bsp143I GATC 7 cut(s) 5, 99, 175, 514, 585, 794, 1120
BspACI CCGC 1 cut(s) 834
BspANI GGCC 2 cut(s) 74, 243
BspCNI CTCAG 7 cut(s) 92, 144, 193, 418, 628, 802, 1038
BspFNI CGCG 1 cut(s) 698
BspHI TCATGA 1 cut(s) 658
BspLI GGNNCC 2 cut(s) 710, 856
BspMAI CTGCAG 2 cut(s) 70, 863
BspMI ACCTGC 1 cut(s) 866
BspPI GGATC 5 cut(s) 13, 94, 170, 509, 802
BspQI GCTCTTC 1 cut(s) 1035
BspT107I GGYRCC 1 cut(s) 708
BspTNI GGTCTC 2 cut(s) 619, 1187
BsrDI GCAATG 1 cut(s) 682
BsrI ACTGG 3 cut(s) 313, 692, 1010
BssECI CCNNGG 2 cut(s) 1067, 1092
BssMI GATC 7 cut(s) 5, 99, 175, 514, 585, 794, 1120
BssT1I CCWWGG 1 cut(s) 1092
Bst2UI CCWGG 3 cut(s) 761, 867, 1068
Bst4CI ACNGT 1 cut(s) 886
Bst6I CTCTTC 1 cut(s) 1035
BstC8I GCNNGC 2 cut(s) 76, 836
BstDEI CTNAG 9 cut(s) 79, 131, 180, 384, 405, 609, 615, 789, 1046
BstEII GGTNACC 1 cut(s) 973
BstF5I GGATG 3 cut(s) 333, 403, 476
BstFNI CGCG 1 cut(s) 698
BstHHI GCGC 2 cut(s) 111, 698
BstKTI GATC 7 cut(s) 8, 102, 178, 517, 588, 797, 1123
BstMAI GTCTC 3 cut(s) 5, 619, 1187
BstMBI GATC 7 cut(s) 5, 99, 175, 514, 585, 794, 1120
BstMWI GCNNNNNNNGC 1 cut(s) 867
BstNI CCWGG 3 cut(s) 761, 867, 1068
BstPI GGTNACC 1 cut(s) 973
BstSCI CCNGG 3 cut(s) 759, 865, 1066
BstSFI CTRYAG 2 cut(s) 66, 859
BstUI CGCG 1 cut(s) 698
BstV1I GCAGC 1 cut(s) 26
BstX2I RGATCY 1 cut(s) 99
BstXI CCANNNNNNTGG 1 cut(s) 82
BstYI RGATCY 1 cut(s) 99
BsuI GTATCC 1 cut(s) 157
BsuRI GGCC 2 cut(s) 74, 243
BtsCI GGATG 3 cut(s) 333, 403, 476
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 5 cut(s) 75, 87, 559, 882, 1017
BveI ACCTGC 1 cut(s) 866
Cac8I GCNNGC 2 cut(s) 76, 836
CciI TCATGA 1 cut(s) 658
CfoI GCGC 2 cut(s) 111, 698
Cfr13I GGNCC 4 cut(s) 85, 260, 855, 1078
Csp6I GTAC 4 cut(s) 160, 709, 799, 1186
CspCI CAANNNNNGTGG 2 cut(s) 51, 86
CviAII CATG 4 cut(s) 394, 659, 805, 1189
CviQI GTAC 4 cut(s) 160, 709, 799, 1186
DdeI CTNAG 9 cut(s) 79, 131, 180, 384, 405, 609, 615, 789, 1046
DpnI GATC 7 cut(s) 7, 101, 177, 516, 587, 796, 1122
DpnII GATC 7 cut(s) 5, 99, 175, 514, 585, 794, 1120
DraI TTTAAA 1 cut(s) 1174
EaeI YGGCCR 2 cut(s) 72, 241
Eam1104I CTCTTC 1 cut(s) 1035
EarI CTCTTC 1 cut(s) 1035
Eco130I CCWWGG 1 cut(s) 1092
Eco31I GGTCTC 2 cut(s) 619, 1187
Eco47I GGWCC 4 cut(s) 85, 260, 855, 1078
Eco91I GGTNACC 1 cut(s) 973
EcoO109I RGGNCCY 1 cut(s) 855
EcoO65I GGTNACC 1 cut(s) 973
EcoRII CCWGG 3 cut(s) 759, 865, 1066
EcoT14I CCWWGG 1 cut(s) 1092
ErhI CCWWGG 1 cut(s) 1092
Esp3I CGTCTC 1 cut(s) 5
FaeI CATG 4 cut(s) 397, 662, 808, 1192
FaqI GGGAC 2 cut(s) 302, 868
FatI CATG 4 cut(s) 393, 658, 804, 1188
FauI CCCGC 1 cut(s) 827
FauNDI CATATG 1 cut(s) 1208
FbaI TGATCA 1 cut(s) 585
Fnu4HI GCNGC 1 cut(s) 40
FokI GGATG 3 cut(s) 320, 410, 463
Fsp4HI GCNGC 1 cut(s) 40
FspBI CTAG 1 cut(s) 990
GlaI GCGC 2 cut(s) 110, 697
GluI GCNGC 1 cut(s) 40
GsuI CTGGAG 1 cut(s) 993
HaeIII GGCC 2 cut(s) 74, 243
HhaI GCGC 2 cut(s) 111, 698
Hin1II CATG 4 cut(s) 397, 662, 808, 1192
Hin6I GCGC 2 cut(s) 109, 696
HinP1I GCGC 2 cut(s) 109, 696
HinfI GANTC 5 cut(s) 135, 315, 456, 613, 827
HphI GGTGA 3 cut(s) 519, 947, 956
Hpy166II GTNNAC 5 cut(s) 85, 411, 667, 685, 882
Hpy188I TCNGA 7 cut(s) 10, 134, 175, 461, 571, 585, 618
Hpy188III TCNNGA 4 cut(s) 103, 353, 467, 659
Hpy8I GTNNAC 5 cut(s) 85, 411, 667, 685, 882
HpyAV CCTTC 2 cut(s) 122, 528
HpyCH4III ACNGT 1 cut(s) 886
HpyCH4V TGCA 6 cut(s) 62, 68, 437, 772, 844, 861
HpyF10VI GCNNNNNNNGC 1 cut(s) 867
HpyF3I CTNAG 9 cut(s) 79, 131, 180, 384, 405, 609, 615, 789, 1046
Hsp92II CATG 4 cut(s) 397, 662, 808, 1192
HspAI GCGC 2 cut(s) 109, 696
KpnI GGTACC 1 cut(s) 712
Ksp22I TGATCA 1 cut(s) 585
Kzo9I GATC 7 cut(s) 5, 99, 175, 514, 585, 794, 1120
LguI GCTCTTC 1 cut(s) 1035
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 5 cut(s) 96, 388, 446, 853, 1189
MaeI CTAG 1 cut(s) 990
MaeIII GTNAC 2 cut(s) 525, 973
MalI GATC 7 cut(s) 7, 101, 177, 516, 587, 796, 1122
MboI GATC 7 cut(s) 5, 99, 175, 514, 585, 794, 1120
MboII GAAGA 5 cut(s) 42, 45, 733, 1049, 1052
MflI RGATCY 1 cut(s) 99
MlsI TGGCCA 1 cut(s) 74
MluNI TGGCCA 1 cut(s) 74
MlyI GAGTC 3 cut(s) 324, 607, 836
Mox20I TGGCCA 1 cut(s) 74
MscI TGGCCA 1 cut(s) 74
MseI TTAA 3 cut(s) 212, 950, 1173
MslI CAYNNNNRTG 1 cut(s) 396
Msp20I TGGCCA 1 cut(s) 74
MspR9I CCNGG 3 cut(s) 761, 867, 1068
MvaI CCWGG 3 cut(s) 761, 867, 1068
MvnI CGCG 1 cut(s) 698
MwoI GCNNNNNNNGC 1 cut(s) 867
NdeI CATATG 1 cut(s) 1208
NdeII GATC 7 cut(s) 5, 99, 175, 514, 585, 794, 1120
NlaIII CATG 4 cut(s) 397, 662, 808, 1192
NlaIV GGNNCC 2 cut(s) 710, 856
NmuCI GTSAC 1 cut(s) 525
PagI TCATGA 1 cut(s) 658
PciSI GCTCTTC 1 cut(s) 1035
PfeI GAWTC 2 cut(s) 135, 456
PflMI CCANNNNNTGG 1 cut(s) 156
PkrI GCNGC 1 cut(s) 41
PleI GAGTC 3 cut(s) 323, 607, 835
PpsI GAGTC 3 cut(s) 323, 607, 835
PpuMI RGGWCCY 1 cut(s) 855
Psp5II RGGWCCY 1 cut(s) 855
Psp6I CCWGG 3 cut(s) 759, 865, 1066
PspEI GGTNACC 1 cut(s) 973
PspGI CCWGG 3 cut(s) 759, 865, 1066
PspN4I GGNNCC 2 cut(s) 710, 856
PspPI GGNCC 4 cut(s) 85, 260, 855, 1078
PspPPI RGGWCCY 1 cut(s) 855
PstI CTGCAG 2 cut(s) 70, 863
PsuI RGATCY 1 cut(s) 99
RsaI GTAC 4 cut(s) 161, 710, 800, 1187
RsaNI GTAC 4 cut(s) 160, 709, 799, 1186
RseI CAYNNNNRTG 1 cut(s) 396
SapI GCTCTTC 1 cut(s) 1035
SaqAI TTAA 3 cut(s) 212, 950, 1173
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 7 cut(s) 5, 99, 175, 514, 585, 794, 1120
Sau96I GGNCC 4 cut(s) 85, 260, 855, 1078
SchI GAGTC 3 cut(s) 324, 607, 836
ScrFI CCNGG 3 cut(s) 761, 867, 1068
SfaNI GCATC 5 cut(s) 96, 388, 446, 853, 1189
SfcI CTRYAG 2 cut(s) 66, 859
SinI GGWCC 4 cut(s) 85, 260, 855, 1078
SmiMI CAYNNNNRTG 1 cut(s) 396
SsiI CCGC 1 cut(s) 834
SspMI CTAG 1 cut(s) 990
StyD4I CCNGG 3 cut(s) 759, 865, 1066
StyI CCWWGG 1 cut(s) 1092
TaaI ACNGT 1 cut(s) 886
TaqI TCGA 2 cut(s) 715, 813
TatI WGTACW 1 cut(s) 1185
TfiI GAWTC 2 cut(s) 135, 456
Tru1I TTAA 3 cut(s) 212, 950, 1173
Tru9I TTAA 3 cut(s) 212, 950, 1173
TscAI CASTG 5 cut(s) 75, 87, 559, 889, 1017
TseFI GTSAC 1 cut(s) 525
TseI GCWGC 1 cut(s) 39
Tsp45I GTSAC 1 cut(s) 525
TspDTI ATGAA 3 cut(s) 271, 637, 1126
TspRI CASTG 5 cut(s) 75, 87, 559, 889, 1017
Van91I CCANNNNNTGG 1 cut(s) 156
VpaK11BI GGWCC 4 cut(s) 85, 260, 855, 1078
XapI RAATTY 4 cut(s) 272, 323, 348, 502
XcmI CCANNNNNNNNNTGG 1 cut(s) 340
XspI CTAG 1 cut(s) 990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.