Prupe.1G066200_v2.0.a1

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014710
Physical Location & Seq
Forward (+)
4719104 .. 4720422
1319 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G066200.1

Sequence Viewer

Length: 1152 bp
ATGGCACAGGATAGGAGAAGTTTAGAAAAGAGAAGAAGATGCGAAGCCAGTGCAGCTGCATTGGTCGACTGTTTGGACATGCTGATAGAGATTCTAATGCAGCTTCCGGCAAAGCAGATTTTCAGAACAAAGGCAGTGTCAAAAGAATGGTACTCCATAATCTCTGATCCTATTTTTGTTGTAAATTATGCCAAAAGAAACTCAAAATCTCTATCGGGGTTCGTCTTGAATGGTCGTAGAGCCCCATCCCCAGAATTTTTCTTCGTTTCTCTAAGAGGCAATACTAGCAGACCAGCTAGAGACCCACAATTCATTCACATCCCCCAGATCAAAATTCAAAATATATGCAAGGGGTTGTTGTGTTATTCTCAGCCTCACATGGATGACTCTGGGTTCACTTCTTATTATGTTTGTAATCCTACTTCTGGGCAAACCAAAAGAATTAGTGTTCTTGACCATTCTGACAACAGGAGAGTAATGTCCGTTGATTTGGCTTTTGATCCTTTGAAATCAGCTTTCTACAATCTGATTTTTGTTACTGAATTATCTCGGTCAGAATCCCAGCAACTGATCAAGATTGGCACCTATTCCTCCAAGACTCAGTCTTGGACCTATGGGCTGCATAATTTGGCTTACGAGGTAGGCTTTGGACATGGGGTTCATTGCAATGGTGCTATTTATTGGCGCCATGTGAGAAACAACTCTGTGTCTTACTTTGATTTTGAGGCAAATTGCATTCAAAACTTGAGAATTCCCCAAATGACATCAGAACCCTACCGGACGAACATTGGTTACCTTGGGGAGTCGGGCGGGCGCTTGCATCTTGTCAGGACCTGCAGACCGAGCAGCATCCGCTTCACCGTCTTTGAAATGAAGGACGATAGGTCGGGGTGGTTGGTGAAGTGTCAAAGCGATTTCGGGGATTTGGTGGCTTGTTTTCCGAGGATGGGAAGGTTTGCCCATGGGCCTTATCAGTTTAATCTGATGAACCTGTTTGAAGGTGAACGAGAAGAGGACTTGAACATTGTGCTCAAAATACCAGGTGCTGTGGTCCAGTATAATGCCAAGGACAAGACCTCAAGGAAGCTCCGGGGTCTAAACCCTACACCGTTTAAAAACTATAAACACACAAAAAAAAAATCCAAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

384

Amino Acids

43.91

Weight (kDa)

9.58

Isoelectric Point (pI)

48.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014710)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g06290 FvH4_4g06330
malus_domestica MD13G1235000.v1.1
prunus_persica Prupe.1G066100_v2.0.a1 Prupe.1G066200_v2.0.a1
pyrus_communis pycom13g20750
rosa_chinensis RchiOBHm_Chr4g0398011
rosa_laevigata RLG00000014125
rosa_roxburghii Rroxscaffold_5G00342970
rosa_rugosa Rorug04G0005500 Rorug06G0022700
rosa_samantha Rh4AG082200 Rh4BG079700 Rh4DG075100 Rh6BG144300 Rh6DG128700
rosa_wichuraiana Rw4G006860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 842
AccB1I GGYRCC 2 cut(s) 581, 684
AccI GTMKAC 1 cut(s) 66
AciI CCGC 2 cut(s) 810, 853
AclWI GGATC 2 cut(s) 161, 494
AcsI RAATTY 3 cut(s) 254, 333, 750
AcyI GRCGYC 1 cut(s) 685
AfaI GTAC 1 cut(s) 152
AfiI CCNNNNNNNGG 2 cut(s) 425, 947
AgsI TTSAA 7 cut(s) 229, 338, 508, 740, 869, 998, 1021
AhdI GACNNNNNGTC 1 cut(s) 883
AjnI CCWGG 1 cut(s) 1039
AloI GAACNNNNNNTCC 2 cut(s) 642, 674
AluBI AGCT 5 cut(s) 56, 103, 296, 515, 1087
AluI AGCT 5 cut(s) 56, 103, 296, 515, 1087
Alw21I GWGCWC 1 cut(s) 1032
Alw26I GTCTC 1 cut(s) 294
AlwI GGATC 2 cut(s) 161, 494
AlwNI CAGNNNCTG 3 cut(s) 568, 834, 1046
AoxI GGCC 1 cut(s) 965
ApeKI GCWGC 5 cut(s) 53, 56, 100, 619, 846
ApoI RAATTY 3 cut(s) 254, 333, 750
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
AspLEI GCGC 2 cut(s) 687, 816
AspS9I GGNCC 4 cut(s) 609, 831, 965, 1051
AsuC2I CCSGG 1 cut(s) 1091
AsuHPI GGTGA 3 cut(s) 850, 910, 1013
AvaII GGWCC 3 cut(s) 609, 831, 1051
BanI GGYRCC 2 cut(s) 581, 684
BanII GRGCYC 1 cut(s) 244
BarI GAAGNNNNNNTAC 2 cut(s) 406, 438
Bbv12I GWGCWC 1 cut(s) 1032
BbvI GCAGC 5 cut(s) 43, 65, 112, 606, 858
BccI CCATC 2 cut(s) 253, 940
BcgI CGANNNNNNTGC 2 cut(s) 32, 66
BciT130I CCWGG 1 cut(s) 1041
BclI TGATCA 1 cut(s) 570
BcnI CCSGG 1 cut(s) 1091
BcoDI GTCTC 1 cut(s) 294
BfaI CTAG 2 cut(s) 285, 297
BfmI CTRYAG 1 cut(s) 835
BfoI RGCGCY 2 cut(s) 688, 817
BfuAI ACCTGC 1 cut(s) 842
BisI GCNGC 5 cut(s) 54, 57, 101, 620, 847
BlsI GCNGC 5 cut(s) 55, 58, 102, 621, 848
Bme1390I CCNGG 2 cut(s) 1041, 1091
Bme18I GGWCC 3 cut(s) 609, 831, 1051
BmeRI GACNNNNNGTC 1 cut(s) 883
BmgT120I GGNCC 4 cut(s) 609, 831, 965, 1051
BmiI GGNNCC 2 cut(s) 583, 686
BmrFI CCNGG 2 cut(s) 1041, 1091
BmsI GCATC 3 cut(s) 29, 829, 858
BpuEI CTTGAG 2 cut(s) 766, 1063
BpuMI CCSGG 1 cut(s) 1091
BsaHI GRCGYC 1 cut(s) 685
BsaI GGTCTC 1 cut(s) 294
BsaJI CCNNGG 5 cut(s) 796, 941, 961, 1065, 1090
BsaWI WCCGGW 1 cut(s) 777
Bsc4I CCNNNNNNNGG 2 cut(s) 425, 947
Bse1I ACTGG 2 cut(s) 48, 1054
Bse3DI GCAATG 2 cut(s) 661, 673
BseBI CCWGG 1 cut(s) 1041
BseDI CCNNGG 5 cut(s) 796, 941, 961, 1065, 1090
BseGI GGATG 5 cut(s) 245, 318, 388, 849, 951
BseLI CCNNNNNNNGG 2 cut(s) 425, 947
BseMI GCAATG 2 cut(s) 661, 673
BseMII CTCAG 2 cut(s) 383, 614
BseNI ACTGG 2 cut(s) 48, 1054
BseXI GCAGC 5 cut(s) 43, 65, 112, 606, 858
BseYI CCCAGC 1 cut(s) 561
BsgI GTGCAG 1 cut(s) 72
BshFI GGCC 1 cut(s) 967
BshNI GGYRCC 2 cut(s) 581, 684
BsiHKAI GWGCWC 1 cut(s) 1032
BsiSI CCGG 3 cut(s) 107, 778, 1090
BslI CCNNNNNNNGG 2 cut(s) 425, 947
BsmAI GTCTC 1 cut(s) 294
BsmI GAATGC 1 cut(s) 735
BsnI GGCC 1 cut(s) 967
Bso31I GGTCTC 1 cut(s) 294
Bsp1286I GDGCHC 2 cut(s) 244, 1032
Bsp143I GATC 4 cut(s) 166, 327, 499, 570
Bsp19I CCATGG 1 cut(s) 961
BspACI CCGC 2 cut(s) 810, 853
BspANI GGCC 1 cut(s) 967
BspCNI CTCAG 2 cut(s) 382, 613
BspLI GGNNCC 2 cut(s) 583, 686
BspMAI CTGCAG 1 cut(s) 839
BspMI ACCTGC 1 cut(s) 842
BspPI GGATC 2 cut(s) 161, 494
BspT107I GGYRCC 2 cut(s) 581, 684
BspTNI GGTCTC 1 cut(s) 294
BsrDI GCAATG 2 cut(s) 661, 673
BsrI ACTGG 2 cut(s) 48, 1054
BssECI CCNNGG 5 cut(s) 796, 941, 961, 1065, 1090
BssMI GATC 4 cut(s) 166, 327, 499, 570
BssNI GRCGYC 1 cut(s) 685
BssT1I CCWWGG 3 cut(s) 796, 961, 1065
Bst2UI CCWGG 1 cut(s) 1041
Bst4CI ACNGT 3 cut(s) 71, 862, 1110
Bst6I CTCTTC 1 cut(s) 1005
BstACI GRCGYC 1 cut(s) 685
BstC8I GCNNGC 2 cut(s) 812, 818
BstDEI CTNAG 3 cut(s) 272, 369, 600
BstDSI CCRYGG 1 cut(s) 961
BstEII GGTNACC 1 cut(s) 791
BstF5I GGATG 5 cut(s) 245, 318, 388, 849, 951
BstH2I RGCGCY 2 cut(s) 688, 817
BstHHI GCGC 2 cut(s) 687, 816
BstKTI GATC 4 cut(s) 169, 330, 502, 573
BstMAI GTCTC 1 cut(s) 294
BstMBI GATC 4 cut(s) 166, 327, 499, 570
BstMWI GCNNNNNNNGC 4 cut(s) 53, 285, 843, 852
BstNI CCWGG 1 cut(s) 1041
BstNSI RCATGY 1 cut(s) 82
BstPI GGTNACC 1 cut(s) 791
BstSCI CCNGG 2 cut(s) 1039, 1089
BstSFI CTRYAG 1 cut(s) 835
BstV1I GCAGC 5 cut(s) 43, 65, 112, 606, 858
BsuRI GGCC 1 cut(s) 967
BtgI CCRYGG 1 cut(s) 961
BtsCI GGATG 5 cut(s) 245, 318, 388, 849, 951
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 2 cut(s) 55, 141
BveI ACCTGC 1 cut(s) 842
Cac8I GCNNGC 2 cut(s) 812, 818
CaiI CAGNNNCTG 3 cut(s) 568, 834, 1046
CfoI GCGC 2 cut(s) 687, 816
Cfr13I GGNCC 4 cut(s) 609, 831, 965, 1051
CsiI ACCWGGT 1 cut(s) 1039
Csp6I GTAC 1 cut(s) 151
CviAII CATG 5 cut(s) 79, 379, 653, 689, 962
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 3 cut(s) 272, 369, 600
DinI GGCGCC 1 cut(s) 686
DpnI GATC 4 cut(s) 168, 329, 501, 572
DpnII GATC 4 cut(s) 166, 327, 499, 570
DraI TTTAAA 1 cut(s) 1114
DriI GACNNNNNGTC 1 cut(s) 883
Eam1104I CTCTTC 1 cut(s) 1005
Eam1105I GACNNNNNGTC 1 cut(s) 883
EarI CTCTTC 1 cut(s) 1005
Eco130I CCWWGG 3 cut(s) 796, 961, 1065
Eco24I GRGCYC 1 cut(s) 244
Eco31I GGTCTC 1 cut(s) 294
Eco47I GGWCC 3 cut(s) 609, 831, 1051
Eco91I GGTNACC 1 cut(s) 791
EcoO109I RGGNCCY 1 cut(s) 831
EcoO65I GGTNACC 1 cut(s) 791
EcoRI GAATTC 1 cut(s) 750
EcoRII CCWGG 1 cut(s) 1039
EcoT14I CCWWGG 3 cut(s) 796, 961, 1065
EcoT38I GRGCYC 1 cut(s) 244
EgeI GGCGCC 1 cut(s) 686
EheI GGCGCC 1 cut(s) 686
ErhI CCWWGG 3 cut(s) 796, 961, 1065
FaeI CATG 5 cut(s) 82, 382, 656, 692, 965
FatI CATG 5 cut(s) 78, 378, 652, 688, 961
FauI CCCGC 1 cut(s) 803
FbaI TGATCA 1 cut(s) 570
FblI GTMKAC 1 cut(s) 66
Fnu4HI GCNGC 5 cut(s) 54, 57, 101, 620, 847
FokI GGATG 5 cut(s) 232, 305, 395, 836, 958
FriOI GRGCYC 1 cut(s) 244
Fsp4HI GCNGC 5 cut(s) 54, 57, 101, 620, 847
FspBI CTAG 2 cut(s) 285, 297
GlaI GCGC 2 cut(s) 686, 815
GluI GCNGC 5 cut(s) 54, 57, 101, 620, 847
GsaI CCCAGC 1 cut(s) 565
HaeII RGCGCY 2 cut(s) 688, 817
HaeIII GGCC 1 cut(s) 967
HapII CCGG 3 cut(s) 107, 778, 1090
HhaI GCGC 2 cut(s) 687, 816
Hin1I GRCGYC 1 cut(s) 685
Hin1II CATG 5 cut(s) 82, 382, 656, 692, 965
Hin6I GCGC 2 cut(s) 685, 814
HinP1I GCGC 2 cut(s) 685, 814
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HinfI GANTC 5 cut(s) 91, 386, 557, 598, 803
HpaII CCGG 3 cut(s) 107, 778, 1090
HphI GGTGA 3 cut(s) 850, 910, 1013
Hpy166II GTNNAC 3 cut(s) 67, 396, 1004
Hpy188I TCNGA 8 cut(s) 125, 166, 463, 528, 556, 769, 942, 984
Hpy188III TCNNGA 4 cut(s) 226, 452, 574, 829
Hpy8I GTNNAC 3 cut(s) 67, 396, 1004
HpyAV CCTTC 3 cut(s) 868, 945, 992
HpyCH4III ACNGT 3 cut(s) 71, 862, 1110
HpyCH4V TGCA 9 cut(s) 53, 59, 100, 348, 622, 666, 735, 820, 837
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 285, 843, 852
HpyF3I CTNAG 3 cut(s) 272, 369, 600
Hsp92I GRCGYC 1 cut(s) 685
Hsp92II CATG 5 cut(s) 82, 382, 656, 692, 965
HspAI GCGC 2 cut(s) 685, 814
KasI GGCGCC 1 cut(s) 684
Ksp22I TGATCA 1 cut(s) 570
Kzo9I GATC 4 cut(s) 166, 327, 499, 570
LmnI GCTCC 1 cut(s) 1092
Lsp1109I GCAGC 5 cut(s) 43, 65, 112, 606, 858
LweI GCATC 3 cut(s) 29, 829, 858
MabI ACCWGGT 1 cut(s) 1039
MaeI CTAG 2 cut(s) 285, 297
MaeIII GTNAC 2 cut(s) 535, 791
MalI GATC 4 cut(s) 168, 329, 501, 572
MboI GATC 4 cut(s) 166, 327, 499, 570
MboII GAAGA 4 cut(s) 45, 48, 253, 1022
MhlI GDGCHC 2 cut(s) 244, 1032
Mly113I GGCGCC 1 cut(s) 685
MlyI GAGTC 3 cut(s) 380, 592, 812
MnlI CCTC 8 cut(s) 269, 384, 601, 631, 718, 936, 1006, 1087
MseI TTAA 2 cut(s) 978, 1113
MslI CAYNNNNRTG 2 cut(s) 381, 666
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 3 cut(s) 107, 778, 1090
MspR9I CCNGG 2 cut(s) 1041, 1091
Mva1269I GAATGC 1 cut(s) 735
MvaI CCWGG 1 cut(s) 1041
MwoI GCNNNNNNNGC 4 cut(s) 53, 285, 843, 852
NarI GGCGCC 1 cut(s) 685
NciI CCSGG 1 cut(s) 1091
NcoI CCATGG 1 cut(s) 961
NdeII GATC 4 cut(s) 166, 327, 499, 570
NlaIII CATG 5 cut(s) 82, 382, 656, 692, 965
NlaIV GGNNCC 2 cut(s) 583, 686
NspI RCATGY 1 cut(s) 82
PctI GAATGC 1 cut(s) 735
PfeI GAWTC 2 cut(s) 91, 557
PflFI GACNNNGTC 1 cut(s) 601
PkrI GCNGC 5 cut(s) 55, 58, 102, 621, 848
PleI GAGTC 3 cut(s) 380, 592, 811
PluTI GGCGCC 1 cut(s) 688
PpsI GAGTC 3 cut(s) 380, 592, 811
PpuMI RGGWCCY 1 cut(s) 831
Psp5II RGGWCCY 1 cut(s) 831
Psp6I CCWGG 1 cut(s) 1039
PspEI GGTNACC 1 cut(s) 791
PspFI CCCAGC 1 cut(s) 561
PspGI CCWGG 1 cut(s) 1039
PspN4I GGNNCC 2 cut(s) 583, 686
PspPI GGNCC 4 cut(s) 609, 831, 965, 1051
PspPPI RGGWCCY 1 cut(s) 831
PsrI GAACNNNNNNTAC 2 cut(s) 776, 808
PstI CTGCAG 1 cut(s) 839
PstNI CAGNNNCTG 3 cut(s) 568, 834, 1046
PsyI GACNNNGTC 1 cut(s) 601
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
RseI CAYNNNNRTG 2 cut(s) 381, 666
SalI GTCGAC 1 cut(s) 65
SaqAI TTAA 2 cut(s) 978, 1113
SatI GCNGC 5 cut(s) 54, 57, 101, 620, 847
Sau3AI GATC 4 cut(s) 166, 327, 499, 570
Sau96I GGNCC 4 cut(s) 609, 831, 965, 1051
SchI GAGTC 3 cut(s) 380, 592, 812
ScrFI CCNGG 2 cut(s) 1041, 1091
SduI GDGCHC 2 cut(s) 244, 1032
SexAI ACCWGGT 1 cut(s) 1039
SfaNI GCATC 3 cut(s) 29, 829, 858
SfcI CTRYAG 1 cut(s) 835
SfoI GGCGCC 1 cut(s) 686
SinI GGWCC 3 cut(s) 609, 831, 1051
SmiMI CAYNNNNRTG 2 cut(s) 381, 666
SmlI CTYRAG 2 cut(s) 745, 1078
SmoI CTYRAG 2 cut(s) 745, 1078
SsiI CCGC 2 cut(s) 810, 853
SspDI GGCGCC 1 cut(s) 684
SspMI CTAG 2 cut(s) 285, 297
StyD4I CCNGG 2 cut(s) 1039, 1089
StyI CCWWGG 3 cut(s) 796, 961, 1065
TaaI ACNGT 3 cut(s) 71, 862, 1110
TaqI TCGA 1 cut(s) 66
TaqII GACCGA 2 cut(s) 540, 856
TfiI GAWTC 2 cut(s) 91, 557
Tru1I TTAA 2 cut(s) 978, 1113
Tru9I TTAA 2 cut(s) 978, 1113
TscAI CASTG 2 cut(s) 55, 141
TseI GCWGC 5 cut(s) 53, 56, 100, 619, 846
TspDTI ATGAA 4 cut(s) 301, 650, 887, 1001
TspGWI ACGGA 1 cut(s) 472
TspRI CASTG 2 cut(s) 55, 141
Tth111I GACNNNGTC 1 cut(s) 601
VpaK11BI GGWCC 3 cut(s) 609, 831, 1051
XapI RAATTY 3 cut(s) 254, 333, 750
XceI RCATGY 1 cut(s) 82
XmiI GTMKAC 1 cut(s) 66
XspI CTAG 2 cut(s) 285, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.