RchiOBHm_Chr4g0398011

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0014710
Physical Location & Seq
Forward (+)
14392465 .. 14398654
6190 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37022

Sequence Viewer

Length: 1167 bp
ATGGCAAGTAGAGGAGGAAGAAAAGGGTCCAACATCAGAGCTTCTTCCAGTGCAGCTGAAGTGGGCAATTCCGAAGATCTCTTGAACGAGATTCTAGTTCGCCTCCCAGCCATACCAATTCTCAGGTTCAAATTAGTTTCAAAGCAATGGTACTCCATAATCTCTACCCAAAAATTCACAGTCACTTACGCCAAAAGAAACCCAAACCCTCGCTTGGGGTTTTTGCTGCATACTCGACTTAATTTCCAACCATGCCCACCTACTCTCTTCCTTTCTTTGGGTGGTAAACACCCAAATTTCCTTGACATCCCAAAACTTGAAATCCATCATGTCTGTAATGGGTTGTTGTGCTGTTCTAAGCCTCATGTGCATGCTCCTGAAATCACTTCTTATTATGTTTGTAATCATTCTTCTGGGCAATCAAAATGGCTTCGGGTTCTTAGAAGCCCATGCATTGAACGTGTAAAGGCTTTTAATTTGGCCTTTGATCCTTTGAAATCACCTCATTACAGGCTCGTTTTTGTGAGTGAATTGTCTTCGTTAGATGAGTACCATTTGATCAAAATTGATGTTTACTTATCCGAGACCGAGTCTTGGAGACCCTCCAAGAAGGGGATTTACATTTTGCAATACGACATAGGGTTTCACATTGCCGTTTACTGGAAGGATGCAATTTACTGGTACAATCAGAAGAATCAGTCTTTGGCATATTTCGATTTCGATGACGACAGCGTGGAGAGTTTGCCAAAGCCACAAGTTTCTGCTGGAGCCATGACTTATTACTATTTTGGCGAGTCGGGTGGGCATTTGCATCTTGTTGGAGCTTGTAGACCTTGGACTACATTGTTCACTGTCTTCGAAATGAAGGAAGATAGGTCTGGGTGGTTTGTGAAGTATAACGGTGATTTTGGTGCTTTAGCTGCTGCATTTCCGAAGATGGTTACTAATAAACCAAATAGGCCTTATGTGTTTTCTCTGGTGAACCTGTTAAGAGGTGAAAAAGAAGAGGAGTTGATTATTGTGTTAACAATTCCCGAAGGTGTGATTGGGTATAATGTCCAGGATAAGACCTTTGAGAAGCTGTGCAATCTATCTTTGAGTGAACGTAAAATGCAGCAAATGACATTTAAAGCTCATCAATATATTGAGACCGTTGCTTCGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

388

Amino Acids

44.35

Weight (kDa)

8.91

Isoelectric Point (pI)

43.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 25 - 60 5.6e-08 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014710)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g06290 FvH4_4g06330
malus_domestica MD13G1235000.v1.1
prunus_persica Prupe.1G066100_v2.0.a1 Prupe.1G066200_v2.0.a1
pyrus_communis pycom13g20750
rosa_chinensis RchiOBHm_Chr4g0398011
rosa_laevigata RLG00000014125
rosa_roxburghii Rroxscaffold_5G00342970
rosa_rugosa Rorug04G0005500 Rorug06G0022700
rosa_samantha Rh4AG082200 Rh4BG079700 Rh4DG075100 Rh6BG144300 Rh6DG128700
rosa_wichuraiana Rw4G006860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 829
AclWI GGATC 1 cut(s) 482
AcsI RAATTY 2 cut(s) 173, 295
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 3 cut(s) 152, 551, 683
AfiI CCNNNNNNNGG 6 cut(s) 214, 215, 277, 594, 612, 660
AflIII ACRYGT 1 cut(s) 460
AgsI TTSAA 6 cut(s) 85, 130, 141, 320, 458, 496
AjnI CCWGG 1 cut(s) 1059
AjuI GAANNNNNNNTTGG 4 cut(s) 686, 718, 1029, 1061
AluBI AGCT 6 cut(s) 41, 56, 824, 920, 1081, 1133
AluI AGCT 6 cut(s) 41, 56, 824, 920, 1081, 1133
Alw26I GTCTC 3 cut(s) 578, 592, 1142
AlwI GGATC 1 cut(s) 482
AoxI GGCC 2 cut(s) 480, 959
ApeKI GCWGC 5 cut(s) 53, 226, 920, 923, 1114
ApoI RAATTY 2 cut(s) 173, 295
ArsI GACNNNNNNTTYG 1 cut(s) 1141
AspS9I GGNCC 1 cut(s) 27
AsuHPI GGTGA 4 cut(s) 492, 914, 991, 1007
AsuII TTCGAA 1 cut(s) 858
AvaII GGWCC 1 cut(s) 27
BarI GAAGNNNNNNTAC 4 cut(s) 394, 426, 602, 634
BbsI GAAGAC 2 cut(s) 528, 847
BbvI GCAGC 5 cut(s) 65, 213, 907, 910, 1126
BccI CCATC 2 cut(s) 333, 931
BceAI ACGGC 1 cut(s) 638
BciT130I CCWGG 1 cut(s) 1061
BclI TGATCA 1 cut(s) 558
BcoDI GTCTC 3 cut(s) 578, 592, 1142
BfaI CTAG 1 cut(s) 95
BglII AGATCT 1 cut(s) 76
BisI GCNGC 5 cut(s) 54, 227, 921, 924, 1115
BlsI GCNGC 5 cut(s) 55, 228, 922, 925, 1116
Bme1390I CCNGG 1 cut(s) 1061
Bme18I GGWCC 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 27
BmiI GGNNCC 2 cut(s) 28, 769
BmrFI CCNGG 1 cut(s) 1061
BmsI GCATC 2 cut(s) 658, 820
BpiI GAAGAC 2 cut(s) 528, 847
BpmI CTGGAG 1 cut(s) 786
Bpu14I TTCGAA 1 cut(s) 858
BsaI GGTCTC 3 cut(s) 578, 592, 1142
BsaJI CCNNGG 1 cut(s) 833
Bsc4I CCNNNNNNNGG 6 cut(s) 214, 215, 277, 594, 612, 660
Bse1I ACTGG 3 cut(s) 48, 665, 683
Bse3DI GCAATG 2 cut(s) 152, 648
BseBI CCWGG 1 cut(s) 1061
BseDI CCNNGG 1 cut(s) 833
BseGI GGATG 2 cut(s) 306, 673
BseLI CCNNNNNNNGG 6 cut(s) 214, 215, 277, 594, 612, 660
BseMI GCAATG 2 cut(s) 152, 648
BseMII CTCAG 1 cut(s) 136
BseNI ACTGG 3 cut(s) 48, 665, 683
BseRI GAGGAG 2 cut(s) 27, 1022
BseXI GCAGC 5 cut(s) 65, 213, 907, 910, 1126
BseYI CCCAGC 1 cut(s) 106
BsgI GTGCAG 1 cut(s) 72
BshFI GGCC 2 cut(s) 482, 961
BslI CCNNNNNNNGG 6 cut(s) 214, 215, 277, 594, 612, 660
BsmAI GTCTC 3 cut(s) 578, 592, 1142
BsnI GGCC 2 cut(s) 482, 961
Bso31I GGTCTC 3 cut(s) 578, 592, 1142
Bsp119I TTCGAA 1 cut(s) 858
Bsp143I GATC 3 cut(s) 76, 487, 558
BspANI GGCC 2 cut(s) 482, 961
BspCNI CTCAG 1 cut(s) 135
BspLI GGNNCC 2 cut(s) 28, 769
BspPI GGATC 1 cut(s) 482
BspT104I TTCGAA 1 cut(s) 858
BspTNI GGTCTC 3 cut(s) 578, 592, 1142
BsrDI GCAATG 2 cut(s) 152, 648
BsrI ACTGG 3 cut(s) 48, 665, 683
BssECI CCNNGG 1 cut(s) 833
BssMI GATC 3 cut(s) 76, 487, 558
BssT1I CCWWGG 1 cut(s) 833
Bst2UI CCWGG 1 cut(s) 1061
Bst4CI ACNGT 4 cut(s) 181, 853, 902, 1153
Bst6I CTCTTC 2 cut(s) 272, 999
BstBI TTCGAA 1 cut(s) 858
BstC8I GCNNGC 1 cut(s) 372
BstDEI CTNAG 3 cut(s) 122, 357, 440
BstF5I GGATG 2 cut(s) 306, 673
BstKTI GATC 3 cut(s) 79, 490, 561
BstMAI GTCTC 3 cut(s) 578, 592, 1142
BstMBI GATC 3 cut(s) 76, 487, 558
BstMWI GCNNNNNNNGC 2 cut(s) 367, 920
BstNI CCWGG 1 cut(s) 1061
BstNSI RCATGY 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 1059
BstV1I GCAGC 5 cut(s) 65, 213, 907, 910, 1126
BstV2I GAAGAC 2 cut(s) 528, 847
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BsuRI GGCC 2 cut(s) 482, 961
BtsCI GGATG 2 cut(s) 306, 673
BtsIMutI CAGTG 2 cut(s) 55, 849
Cac8I GCNNGC 1 cut(s) 372
Cfr13I GGNCC 1 cut(s) 27
Csp6I GTAC 3 cut(s) 151, 550, 682
CviAII CATG 6 cut(s) 252, 329, 365, 371, 450, 772
CviQI GTAC 3 cut(s) 151, 550, 682
DdeI CTNAG 3 cut(s) 122, 357, 440
DpnI GATC 3 cut(s) 78, 489, 560
DpnII GATC 3 cut(s) 76, 487, 558
DraI TTTAAA 1 cut(s) 1129
Eam1104I CTCTTC 2 cut(s) 272, 999
EarI CTCTTC 2 cut(s) 272, 999
Eco130I CCWWGG 1 cut(s) 833
Eco147I AGGCCT 1 cut(s) 961
Eco31I GGTCTC 3 cut(s) 578, 592, 1142
Eco47I GGWCC 1 cut(s) 27
Eco57I CTGAAG 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 1059
EcoT14I CCWWGG 1 cut(s) 833
EcoT22I ATGCAT 1 cut(s) 455
ErhI CCWWGG 1 cut(s) 833
FaeI CATG 6 cut(s) 255, 332, 368, 374, 453, 775
FatI CATG 6 cut(s) 251, 328, 364, 370, 449, 771
FbaI TGATCA 1 cut(s) 558
FblI GTMKAC 1 cut(s) 829
Fnu4HI GCNGC 5 cut(s) 54, 227, 921, 924, 1115
FokI GGATG 2 cut(s) 293, 680
Fsp4HI GCNGC 5 cut(s) 54, 227, 921, 924, 1115
FspBI CTAG 1 cut(s) 95
GluI GCNGC 5 cut(s) 54, 227, 921, 924, 1115
GsaI CCCAGC 1 cut(s) 110
GsuI CTGGAG 1 cut(s) 786
HaeIII GGCC 2 cut(s) 482, 961
Hin1II CATG 6 cut(s) 255, 332, 368, 374, 453, 775
HincII GTYRAC 1 cut(s) 1026
HindII GTYRAC 1 cut(s) 1026
HinfI GANTC 4 cut(s) 91, 590, 694, 794
HpaI GTTAAC 1 cut(s) 1026
HphI GGTGA 4 cut(s) 492, 914, 991, 1007
Hpy166II GTNNAC 8 cut(s) 287, 574, 658, 830, 849, 982, 1026, 1103
Hpy188I TCNGA 5 cut(s) 38, 73, 583, 690, 933
Hpy188III TCNNGA 3 cut(s) 82, 377, 1034
Hpy8I GTNNAC 8 cut(s) 287, 574, 658, 830, 849, 982, 1026, 1103
HpyAV CCTTC 4 cut(s) 604, 658, 859, 1031
HpyCH4III ACNGT 4 cut(s) 181, 853, 902, 1153
HpyCH4IV ACGT 2 cut(s) 460, 1105
HpyF10VI GCNNNNNNNGC 2 cut(s) 367, 920
HpyF3I CTNAG 3 cut(s) 122, 357, 440
HpySE526I ACGT 2 cut(s) 460, 1105
Hsp92II CATG 6 cut(s) 255, 332, 368, 374, 453, 775
Ksp22I TGATCA 1 cut(s) 558
KspAI GTTAAC 1 cut(s) 1026
Kzo9I GATC 3 cut(s) 76, 487, 558
LmnI GCTCC 3 cut(s) 379, 767, 821
Lsp1109I GCAGC 5 cut(s) 65, 213, 907, 910, 1126
LweI GCATC 2 cut(s) 658, 820
MaeI CTAG 1 cut(s) 95
MaeII ACGT 2 cut(s) 460, 1105
MaeIII GTNAC 2 cut(s) 181, 940
MalI GATC 3 cut(s) 78, 489, 560
MboI GATC 3 cut(s) 76, 487, 558
MflI RGATCY 1 cut(s) 76
MlyI GAGTC 2 cut(s) 599, 803
MmeI TCCRAC 3 cut(s) 54, 271, 799
MnlI CCTC 9 cut(s) 5, 8, 113, 219, 372, 513, 613, 986, 1000
Mph1103I ATGCAT 1 cut(s) 455
MseI TTAA 5 cut(s) 240, 474, 989, 1025, 1128
MslI CAYNNNNRTG 1 cut(s) 369
MspA1I CMGCKG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 1061
MvaI CCWGG 1 cut(s) 1061
MwoI GCNNNNNNNGC 2 cut(s) 367, 920
NdeII GATC 3 cut(s) 76, 487, 558
NlaIII CATG 6 cut(s) 255, 332, 368, 374, 453, 775
NlaIV GGNNCC 2 cut(s) 28, 769
NmuCI GTSAC 1 cut(s) 181
NsiI ATGCAT 1 cut(s) 455
NspI RCATGY 1 cut(s) 374
NspV TTCGAA 1 cut(s) 858
PaeI GCATGC 1 cut(s) 374
PceI AGGCCT 1 cut(s) 961
PfeI GAWTC 2 cut(s) 91, 694
PflFI GACNNNGTC 1 cut(s) 589
PfoI TCCNGGA 1 cut(s) 1059
PkrI GCNGC 5 cut(s) 55, 228, 922, 925, 1116
PleI GAGTC 2 cut(s) 598, 802
PpsI GAGTC 2 cut(s) 598, 802
Psp6I CCWGG 1 cut(s) 1059
PspFI CCCAGC 1 cut(s) 106
PspGI CCWGG 1 cut(s) 1059
PspN4I GGNNCC 2 cut(s) 28, 769
PspPI GGNCC 1 cut(s) 27
PsuI RGATCY 1 cut(s) 76
PsyI GACNNNGTC 1 cut(s) 589
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 3 cut(s) 152, 551, 683
RsaNI GTAC 3 cut(s) 151, 550, 682
RseI CAYNNNNRTG 1 cut(s) 369
SaqAI TTAA 5 cut(s) 240, 474, 989, 1025, 1128
SatI GCNGC 5 cut(s) 54, 227, 921, 924, 1115
Sau3AI GATC 3 cut(s) 76, 487, 558
Sau96I GGNCC 1 cut(s) 27
SchI GAGTC 2 cut(s) 599, 803
ScrFI CCNGG 1 cut(s) 1061
SfaNI GCATC 2 cut(s) 658, 820
SfuI TTCGAA 1 cut(s) 858
SinI GGWCC 1 cut(s) 27
SmiMI CAYNNNNRTG 1 cut(s) 369
SphI GCATGC 1 cut(s) 374
SseBI AGGCCT 1 cut(s) 961
SspMI CTAG 1 cut(s) 95
StuI AGGCCT 1 cut(s) 961
StyD4I CCNGG 1 cut(s) 1059
StyI CCWWGG 1 cut(s) 833
TaaI ACNGT 4 cut(s) 181, 853, 902, 1153
TaiI ACGT 2 cut(s) 463, 1108
TaqI TCGA 5 cut(s) 235, 714, 720, 858, 1160
TaqII GACCGA 1 cut(s) 602
TfiI GAWTC 2 cut(s) 91, 694
Tru1I TTAA 5 cut(s) 240, 474, 989, 1025, 1128
Tru9I TTAA 5 cut(s) 240, 474, 989, 1025, 1128
TscAI CASTG 2 cut(s) 55, 856
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 5 cut(s) 53, 226, 920, 923, 1114
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 1 cut(s) 878
TspRI CASTG 2 cut(s) 55, 856
Tth111I GACNNNGTC 1 cut(s) 589
VpaK11BI GGWCC 1 cut(s) 27
XapI RAATTY 2 cut(s) 173, 295
XceI RCATGY 1 cut(s) 374
XmiI GTMKAC 1 cut(s) 829
XspI CTAG 1 cut(s) 95
Zsp2I ATGCAT 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.