RLG00000014125

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0014710
Physical Location & Seq
Forward (+)
47769887 .. 47771062
1176 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014125

Sequence Viewer

Length: 1176 bp
ATGGCAAGCAGAGGAGGACGAAAAAGCTCTAAAGCCAGAGGTTTTTCCATTGCAGCTCAAGTGGGCAACTCCGAAGATCTTGTCATCGAGATCCTATTGCGCCTCCCAGCCAAGCCAGTTCTCAAGTTCAAATCAGTTTCAAAACAATGGTACTCCATAATCTCTACCCCAAAATTTACTGTCACTTACGCCAAAAGAAACCCAAACAATTACTTAGGGTTTTTGTTGAGTGCGCAACTTGATTTCCAACCATACCCACGTGCTCTCTTCCTTTCTTTGGGTGGTTATAATTGTGGTAAACACCCAAATTTCCTTGAAATCCCAAATCTTGAAATTCATCATATCTGTAATGGATTGTTGTGCTGGTCTAAGCCTCATGTTCATGCCCCTGAATTCACTTCTTATTATGTTTGTAATCATTCTTCTGGGCAATCGAAATGGGTTCGGGTTCTTGGAAGTCCCTGCATTAAAAGATTGAAGGCTTTTAATTTGGCTTTTGATCCTTTGAAATCACCTCATTACAGGCTCATCTTTGTTAGTGAATTGTCTGCGTTAGACGAGTACCATCTTATCAAAATTGATATTTACTCGTCTGAGACCAAGTCTTGGAGATCATCCAAGAAAGGGATTTACATTTTGCAATACGATATAGGCTTTCACATTGCGGTTTACTGTAAGGATGCAATGTACTGGTACAATCAGAAAAGTCAGTCTTTAGCATATTTCAATTTCGATGATGACAGCGTGGAGAGTTTGTCAAAGCCAGATGTTTCTGAACCCATGACTTATTACTATTTTGGCGAGTCAGGTGGGCATTTGCATCTTGTTGGAACTTGGAGACCCTGGACTACTTTGTTCACTGTCTTCGAAATGCAGGAAGATAGGTCTAGCTGGTTTGTGAAGTATGATGGTGATTTTGGTGCTTTAGCTACTGTGTTTCCGAAGATGGTTACTAATAAACCAAATAGGCCTTATGTCTTTTCTCTGGTGAACCTGTTAAGAGGTGAAAAAGAAGGCGAGTTGATTATTGTGTTAACAATCCCTGAGGGTGTGATTTGGTATAATGTATGGGATAAGACCATACATAAACTCTTCAATCTGTCTTTGAGTCGACGTAAATTGCAACAGATGACGTTTAAAGCTCATCAATTCATCGAGACCATTGCTTCAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

392

Amino Acids

45.04

Weight (kDa)

9.22

Isoelectric Point (pI)

41.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 25 - 60 2e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014710)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g06290 FvH4_4g06330
malus_domestica MD13G1235000.v1.1
prunus_persica Prupe.1G066100_v2.0.a1 Prupe.1G066200_v2.0.a1
pyrus_communis pycom13g20750
rosa_chinensis RchiOBHm_Chr4g0398011
rosa_laevigata RLG00000014125
rosa_roxburghii Rroxscaffold_5G00342970
rosa_rugosa Rorug04G0005500 Rorug06G0022700
rosa_samantha Rh4AG082200 Rh4BG079700 Rh4DG075100 Rh6BG144300 Rh6DG128700
rosa_wichuraiana Rw4G006860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 288
Acc16I TGCGCA 1 cut(s) 234
AccB7I CCANNNNNTGG 1 cut(s) 606
AccI GTMKAC 1 cut(s) 1111
AciI CCGC 1 cut(s) 665
AclWI GGATC 2 cut(s) 85, 494
AcsI RAATTY 4 cut(s) 173, 307, 333, 392
AcvI CACGTG 1 cut(s) 260
AfaI GTAC 4 cut(s) 152, 563, 689, 695
AfiI CCNNNNNNNGG 3 cut(s) 277, 606, 624
AgsI TTSAA 9 cut(s) 130, 141, 317, 332, 478, 508, 727, 1096, 1170
AjnI CCWGG 1 cut(s) 842
AluBI AGCT 5 cut(s) 27, 56, 891, 929, 1142
AluI AGCT 5 cut(s) 27, 56, 891, 929, 1142
Alw21I GWGCWC 1 cut(s) 265
Alw26I GTCTC 3 cut(s) 590, 832, 1151
AlwI GGATC 2 cut(s) 85, 494
AoxI GGCC 1 cut(s) 968
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 4 cut(s) 173, 307, 333, 392
ArsI GACNNNNNNTTYG 2 cut(s) 66, 98
AspLEI GCGC 2 cut(s) 102, 235
AsuHPI GGTGA 4 cut(s) 504, 923, 1000, 1016
AsuII TTCGAA 1 cut(s) 867
AxyI CCTNAGG 1 cut(s) 1044
BarI GAAGNNNNNNTAC 2 cut(s) 406, 438
BbrPI CACGTG 1 cut(s) 260
BbsI GAAGAC 1 cut(s) 856
Bbv12I GWGCWC 1 cut(s) 265
BbvI GCAGC 1 cut(s) 65
BccI CCATC 3 cut(s) 573, 902, 940
BcgI CGANNNNNNTGC 1 cut(s) 1145
BciT130I CCWGG 1 cut(s) 844
BcoDI GTCTC 3 cut(s) 590, 832, 1151
BfaI CTAG 1 cut(s) 888
BglII AGATCT 1 cut(s) 76
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
Bme1390I CCNGG 1 cut(s) 844
BmrFI CCNGG 1 cut(s) 844
BmsI GCATC 2 cut(s) 670, 829
BpiI GAAGAC 1 cut(s) 856
Bpu14I TTCGAA 1 cut(s) 867
BpuEI CTTGAG 2 cut(s) 42, 107
BsaAI YACGTR 1 cut(s) 260
BsaI GGTCTC 3 cut(s) 590, 832, 1151
BsaJI CCNNGG 1 cut(s) 842
BsaXI ACNNNNNCTCC 2 cut(s) 740, 770
Bsc4I CCNNNNNNNGG 3 cut(s) 277, 606, 624
Bse1I ACTGG 2 cut(s) 116, 695
Bse21I CCTNAGG 1 cut(s) 1044
Bse3DI GCAATG 4 cut(s) 48, 660, 690, 1161
BseBI CCWGG 1 cut(s) 844
BseDI CCNNGG 1 cut(s) 842
BseGI GGATG 2 cut(s) 614, 685
BseLI CCNNNNNNNGG 3 cut(s) 277, 606, 624
BseMI GCAATG 4 cut(s) 48, 660, 690, 1161
BseMII CTCAG 2 cut(s) 585, 1035
BseNI ACTGG 2 cut(s) 116, 695
BseRI GAGGAG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 65
BseYI CCCAGC 1 cut(s) 106
BshFI GGCC 1 cut(s) 970
BsiHKAI GWGCWC 1 cut(s) 265
BslFI GGGAC 1 cut(s) 444
BslI CCNNNNNNNGG 3 cut(s) 277, 606, 624
BsmAI GTCTC 3 cut(s) 590, 832, 1151
BsmFI GGGAC 1 cut(s) 444
BsnI GGCC 1 cut(s) 970
Bso31I GGTCTC 3 cut(s) 590, 832, 1151
Bsp119I TTCGAA 1 cut(s) 867
Bsp1286I GDGCHC 1 cut(s) 265
Bsp143I GATC 4 cut(s) 76, 90, 499, 611
BspACI CCGC 1 cut(s) 665
BspANI GGCC 1 cut(s) 970
BspCNI CTCAG 2 cut(s) 586, 1036
BspPI GGATC 2 cut(s) 85, 494
BspT104I TTCGAA 1 cut(s) 867
BspTNI GGTCTC 3 cut(s) 590, 832, 1151
BsrDI GCAATG 4 cut(s) 48, 660, 690, 1161
BsrI ACTGG 2 cut(s) 116, 695
BssECI CCNNGG 1 cut(s) 842
BssMI GATC 4 cut(s) 76, 90, 499, 611
Bst2UI CCWGG 1 cut(s) 844
Bst4CI ACNGT 4 cut(s) 181, 674, 862, 934
Bst6I CTCTTC 2 cut(s) 272, 1097
BstBAI YACGTR 1 cut(s) 260
BstBI TTCGAA 1 cut(s) 867
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 4 cut(s) 214, 369, 594, 1044
BstF5I GGATG 2 cut(s) 614, 685
BstHHI GCGC 2 cut(s) 102, 235
BstKTI GATC 4 cut(s) 79, 93, 502, 614
BstMAI GTCTC 3 cut(s) 590, 832, 1151
BstMBI GATC 4 cut(s) 76, 90, 499, 611
BstNI CCWGG 1 cut(s) 844
BstSCI CCNGG 1 cut(s) 842
BstV1I GCAGC 1 cut(s) 65
BstV2I GAAGAC 1 cut(s) 856
BstX2I RGATCY 2 cut(s) 76, 90
BstYI RGATCY 2 cut(s) 76, 90
Bsu36I CCTNAGG 1 cut(s) 1044
BsuRI GGCC 1 cut(s) 970
BtsCI GGATG 2 cut(s) 614, 685
BtsIMutI CAGTG 1 cut(s) 858
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 2 cut(s) 102, 235
Csp6I GTAC 4 cut(s) 151, 562, 688, 694
CviAII CATG 3 cut(s) 377, 383, 781
CviQI GTAC 4 cut(s) 151, 562, 688, 694
DdeI CTNAG 4 cut(s) 214, 369, 594, 1044
DpnI GATC 4 cut(s) 78, 92, 501, 613
DpnII GATC 4 cut(s) 76, 90, 499, 611
DraI TTTAAA 1 cut(s) 1138
Eam1104I CTCTTC 2 cut(s) 272, 1097
EarI CTCTTC 2 cut(s) 272, 1097
Eco147I AGGCCT 1 cut(s) 970
Eco31I GGTCTC 3 cut(s) 590, 832, 1151
Eco72I CACGTG 1 cut(s) 260
Eco81I CCTNAGG 1 cut(s) 1044
EcoRI GAATTC 1 cut(s) 392
EcoRII CCWGG 1 cut(s) 842
FaeI CATG 3 cut(s) 380, 386, 784
FalI AAGNNNNNCTT 2 cut(s) 697, 729
FaqI GGGAC 1 cut(s) 444
FatI CATG 3 cut(s) 376, 382, 780
FblI GTMKAC 1 cut(s) 1111
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 2 cut(s) 601, 692
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 1 cut(s) 888
FspI TGCGCA 1 cut(s) 234
GlaI GCGC 2 cut(s) 101, 234
GluI GCNGC 1 cut(s) 54
GsaI CCCAGC 1 cut(s) 110
HaeIII GGCC 1 cut(s) 970
HhaI GCGC 2 cut(s) 102, 235
Hin1II CATG 3 cut(s) 380, 386, 784
Hin6I GCGC 2 cut(s) 100, 233
HinP1I GCGC 2 cut(s) 100, 233
HincII GTYRAC 2 cut(s) 1035, 1112
HindII GTYRAC 2 cut(s) 1035, 1112
HinfI GANTC 2 cut(s) 803, 1108
HpaI GTTAAC 1 cut(s) 1035
HphI GGTGA 4 cut(s) 504, 923, 1000, 1016
Hpy166II GTNNAC 6 cut(s) 299, 670, 858, 991, 1035, 1112
Hpy188I TCNGA 5 cut(s) 73, 595, 702, 775, 942
Hpy188III TCNNGA 3 cut(s) 88, 329, 1156
Hpy8I GTNNAC 6 cut(s) 299, 670, 858, 991, 1035, 1112
Hpy99I CGWCG 1 cut(s) 1116
HpyAV CCTTC 2 cut(s) 472, 1007
HpyCH4III ACNGT 4 cut(s) 181, 674, 862, 934
HpyCH4IV ACGT 3 cut(s) 259, 1114, 1133
HpyCH4V TGCA 7 cut(s) 53, 465, 640, 683, 820, 874, 1123
HpyF3I CTNAG 4 cut(s) 214, 369, 594, 1044
HpySE526I ACGT 3 cut(s) 259, 1114, 1133
Hsp92II CATG 3 cut(s) 380, 386, 784
HspAI GCGC 2 cut(s) 100, 233
KspAI GTTAAC 1 cut(s) 1035
Kzo9I GATC 4 cut(s) 76, 90, 499, 611
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 2 cut(s) 670, 829
MaeI CTAG 1 cut(s) 888
MaeII ACGT 3 cut(s) 259, 1114, 1133
MaeIII GTNAC 2 cut(s) 181, 949
MalI GATC 4 cut(s) 78, 92, 501, 613
MboI GATC 4 cut(s) 76, 90, 499, 611
MboII GAAGA 7 cut(s) 86, 259, 414, 856, 890, 955, 1084
MflI RGATCY 2 cut(s) 76, 90
MhlI GDGCHC 1 cut(s) 265
MlyI GAGTC 2 cut(s) 812, 1117
MmeI TCCRAC 2 cut(s) 271, 808
MnlI CCTC 8 cut(s) 5, 8, 32, 113, 384, 525, 995, 1039
MseI TTAA 5 cut(s) 468, 486, 998, 1034, 1137
MslI CAYNNNNRTG 1 cut(s) 381
MspR9I CCNGG 1 cut(s) 844
MvaI CCWGG 1 cut(s) 844
NdeII GATC 4 cut(s) 76, 90, 499, 611
NlaIII CATG 3 cut(s) 380, 386, 784
NmuCI GTSAC 1 cut(s) 181
NsbI TGCGCA 1 cut(s) 234
NspV TTCGAA 1 cut(s) 867
PceI AGGCCT 1 cut(s) 970
PflFI GACNNNGTC 1 cut(s) 601
PflMI CCANNNNNTGG 1 cut(s) 606
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 2 cut(s) 811, 1116
PmaCI CACGTG 1 cut(s) 260
PmlI CACGTG 1 cut(s) 260
PpsI GAGTC 2 cut(s) 811, 1116
Ppu21I YACGTR 1 cut(s) 260
PsiI TTATAA 1 cut(s) 288
Psp6I CCWGG 1 cut(s) 842
PspCI CACGTG 1 cut(s) 260
PspFI CCCAGC 1 cut(s) 106
PspGI CCWGG 1 cut(s) 842
PsuI RGATCY 2 cut(s) 76, 90
PsyI GACNNNGTC 1 cut(s) 601
RsaI GTAC 4 cut(s) 152, 563, 689, 695
RsaNI GTAC 4 cut(s) 151, 562, 688, 694
RseI CAYNNNNRTG 1 cut(s) 381
SalI GTCGAC 1 cut(s) 1110
SaqAI TTAA 5 cut(s) 468, 486, 998, 1034, 1137
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 4 cut(s) 76, 90, 499, 611
SchI GAGTC 2 cut(s) 812, 1117
ScrFI CCNGG 1 cut(s) 844
SduI GDGCHC 1 cut(s) 265
SfaNI GCATC 2 cut(s) 670, 829
SfuI TTCGAA 1 cut(s) 867
SmiMI CAYNNNNRTG 1 cut(s) 381
SmlI CTYRAG 2 cut(s) 57, 122
SmoI CTYRAG 2 cut(s) 57, 122
SseBI AGGCCT 1 cut(s) 970
SsiI CCGC 1 cut(s) 665
SspMI CTAG 1 cut(s) 888
StuI AGGCCT 1 cut(s) 970
StyD4I CCNGG 1 cut(s) 842
TaaI ACNGT 4 cut(s) 181, 674, 862, 934
TaiI ACGT 3 cut(s) 262, 1117, 1136
TaqI TCGA 6 cut(s) 87, 434, 732, 867, 1111, 1155
TatI WGTACW 1 cut(s) 687
Tru1I TTAA 5 cut(s) 468, 486, 998, 1034, 1137
Tru9I TTAA 5 cut(s) 468, 486, 998, 1034, 1137
TscAI CASTG 1 cut(s) 865
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 3 cut(s) 326, 371, 1141
TspRI CASTG 1 cut(s) 865
Tth111I GACNNNGTC 1 cut(s) 601
Van91I CCANNNNNTGG 1 cut(s) 606
XapI RAATTY 4 cut(s) 173, 307, 333, 392
XmiI GTMKAC 1 cut(s) 1111
XspI CTAG 1 cut(s) 888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.