Rorug06G0022700

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0014710
Physical Location & Seq
Reverse (-)
2860983 .. 2863011
2029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0022700.1

Sequence Viewer

Length: 1593 bp
ATGAAGATCTCTCATCTGTGCCTCTTCTTGTCCTTGCTGCTTTTCGGAGCGAGCAGCTTGTGCTATGCTGATGACCATAAGACAGTTGAGGTAGTTGGGTTTGGAGAATGTACTGACTGTGCTGAGAAGAGCATTAAGACCAGTCATGCTTTTTCAGGTCTTGGTGTTACGATCGACTGCAAGGCCGAAAGCGGGCACTTCGAGAGGAGAGGGGTCGGCGAGCTCAATGAGGAGGGCAAGTTTTCAGTTTCCATCCCAAAGGAGATTGTGAAAGATGGAGGAGATGGATTGAAGGAGGAGTGCTATGCACAGCTCCACAATGCAAAGGCCACACCATGTGCTGCTCATGATGGACTTGAATCCACCAAAGTGGTATTCAAGTCTAAAAACAGTGATGGGAAACAAACCTTTGGAATTGTTGGTACTAGACTGAAGTTTTCACCATCTACATGCACTTCTGCTTTCTTTTGGCCTCCCTTTAAACACCCACTTCCCAAATGGACCAAACCACATCCTCTCTTTGGACACCCAATATTCCCTTTCCCTCCAAAAAAATTCCCTCCATTCCCACCTAAGATTACTATTCCTCCATTCTATAAGAAGCCCTGCCCTCCCAAGATCCCTTTTTACGAAAAGCCCCTCCCCCCGCCAGTCCCAATTTACGAAAAGCCCCTCCCCCCACCAGTACCAATATACAAGAAGCCGCTCCCTCCCCCAGTCCCAATTTACGAAAAGCCCCTCCCCCCACCAGTACCAATATACAAGAAGCCGCTCCCTCCCCCAGTCCCAATATACAAGAAGCCCCTCCCTCCACCAGTGCCGGTTTACAAGCCTCCACCAGTGCCGGTTTACAAGAAACCAAACCCTCCACCAGTACCTATCTACAAAAAACCATGCCCTCCACCAGTTCCAGTCTACAAGAAACCACTCCCTCCACCAGTACCAGTTTACAAAAAGCCCCAGCCCCCAAAAGCACCCAAAAAAGTGTGCCCTCCACCAGTCCCAGTGTACAAGAAGCCACTCCCTCCACCAGTCCCTGTGTACAAGAAGCCACTCCCTCCACCAGTTCCTGTATACAAAAAGCCACTCCCTCCACCAGTCCCTGTGTACAAAAAGCCACTCCCACCACCAGTTCCAGTGTACAAAAAGCCACTCCCACCACCGGTTCCAGTGTACACAAAACCGCTTCCACCGCCGGTTCCTGTGTACACAAAACCGCTCCCACCACCGGTCCCAGTGTACACAAAACCACTCCCACCTCCAATCCCATTTTACAAACCAAAGCCACACCCATGGTTCAAGCCAAAGCCACACCCATTTTACAAACCAAAACCACTCCCACCTCCAATCCCATTTTACAAACCAAAGCCACACCCATGGTTCAAGCCAAAGCCACACCCATTTTACAAACCAAAACCACTCCCACCTCCAATCCCATTTTACAAACCAAAGCCACACCCATGGTTCAAGCCAAAGCCACACCCCTTTTTCAAGCACCCATTCTTGAAGCCTCTGCCTCCATTCCCCAAGATTCCTCATCATCCTTTCTTTAAGAAACCACCATACCCACCACAAACTACTCCCAAGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

530

Amino Acids

59.6

Weight (kDa)

9.92

Isoelectric Point (pI)

61.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 31 - 116 8.2e-10 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014710)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g06290 FvH4_4g06330
malus_domestica MD13G1235000.v1.1
prunus_persica Prupe.1G066100_v2.0.a1 Prupe.1G066200_v2.0.a1
pyrus_communis pycom13g20750
rosa_chinensis RchiOBHm_Chr4g0398011
rosa_laevigata RLG00000014125
rosa_roxburghii Rroxscaffold_5G00342970
rosa_rugosa Rorug04G0005500 Rorug06G0022700
rosa_samantha Rh4AG082200 Rh4BG079700 Rh4DG075100 Rh6BG144300 Rh6DG128700
rosa_wichuraiana Rw4G006860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 706, 772, 1219
AccI GTMKAC 2 cut(s) 915, 1074
AciI CCGC 7 cut(s) 192, 647, 704, 770, 1184, 1193, 1217
AclWI GGATC 1 cut(s) 613
AcsI RAATTY 1 cut(s) 554
AcuI CTGAAG 1 cut(s) 452
AdeI CACNNNGTG 1 cut(s) 338
AfiI CCNNNNNNNGG 4 cut(s) 192, 521, 1162, 1228
AgeI ACCGGT 2 cut(s) 1162, 1228
AgsI TTSAA 8 cut(s) 292, 359, 379, 1300, 1384, 1468, 1492, 1507
AjuI GAANNNNNNNTTGG 2 cut(s) 359, 391
AleI CACNNNNGTG 1 cut(s) 368
AluBI AGCT 3 cut(s) 57, 223, 313
AluI AGCT 3 cut(s) 57, 223, 313
Alw21I GWGCWC 1 cut(s) 225
AlwI GGATC 1 cut(s) 613
AlwNI CAGNNNCTG 3 cut(s) 1037, 1070, 1103
AoxI GGCC 3 cut(s) 183, 327, 470
ApeKI GCWGC 3 cut(s) 37, 54, 341
ApoI RAATTY 1 cut(s) 554
AsiGI ACCGGT 2 cut(s) 1162, 1228
AspS9I GGNCC 2 cut(s) 501, 1231
AsuHPI GGTGA 1 cut(s) 432
AvaII GGWCC 2 cut(s) 501, 1231
BaeGI GKGCMC 2 cut(s) 198, 992
BanII GRGCYC 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 225
BbvI GCAGC 3 cut(s) 24, 66, 328
BccI CCATC 6 cut(s) 260, 269, 278, 344, 389, 451
BfaI CTAG 1 cut(s) 426
BglII AGATCT 1 cut(s) 6
BisI GCNGC 5 cut(s) 38, 55, 342, 704, 770
BlsI GCNGC 5 cut(s) 39, 56, 343, 705, 771
Bme18I GGWCC 2 cut(s) 501, 1231
BmgT120I GGNCC 2 cut(s) 501, 1231
BmiI GGNNCC 3 cut(s) 1167, 1200, 1233
BmrI ACTGGG 4 cut(s) 710, 776, 998, 1229
BmuI ACTGGG 4 cut(s) 710, 776, 998, 1229
BsaJI CCNNGG 4 cut(s) 1292, 1376, 1460, 1584
BsaWI WCCGGW 2 cut(s) 1162, 1228
BsaXI ACNNNNNCTCC 4 cut(s) 224, 254, 571, 601
Bsc4I CCNNNNNNNGG 4 cut(s) 192, 521, 1162, 1228
Bse118I RCCGGY 5 cut(s) 820, 844, 1162, 1195, 1228
BseDI CCNNGG 4 cut(s) 1292, 1376, 1460, 1584
BseGI GGATG 3 cut(s) 252, 511, 1540
BseLI CCNNNNNNNGG 4 cut(s) 192, 521, 1162, 1228
BseMII CTCAG 1 cut(s) 114
BseRI GAGGAG 4 cut(s) 220, 245, 294, 311
BseSI GKGCMC 2 cut(s) 198, 992
BseXI GCAGC 3 cut(s) 24, 66, 328
BseYI CCCAGC 1 cut(s) 960
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 3 cut(s) 185, 329, 472
BshTI ACCGGT 2 cut(s) 1162, 1228
BsiEI CGRYCG 1 cut(s) 174
BsiHKAI GWGCWC 1 cut(s) 225
BsiSI CCGG 5 cut(s) 821, 845, 1163, 1196, 1229
BslFI GGGAC 7 cut(s) 638, 704, 770, 986, 1019, 1085, 1217
BslI CCNNNNNNNGG 4 cut(s) 192, 521, 1162, 1228
BsmFI GGGAC 7 cut(s) 638, 704, 770, 986, 1019, 1085, 1217
BsnI GGCC 3 cut(s) 185, 329, 472
Bsp1286I GDGCHC 3 cut(s) 198, 225, 992
Bsp1407I TGTACA 7 cut(s) 1008, 1041, 1107, 1140, 1173, 1206, 1239
Bsp143I GATC 3 cut(s) 6, 171, 618
Bsp19I CCATGG 3 cut(s) 1292, 1376, 1460
BspACI CCGC 7 cut(s) 192, 647, 704, 770, 1184, 1193, 1217
BspANI GGCC 3 cut(s) 185, 329, 472
BspCNI CTCAG 1 cut(s) 115
BspHI TCATGA 1 cut(s) 346
BspLI GGNNCC 3 cut(s) 1167, 1200, 1233
BspPI GGATC 1 cut(s) 613
BspQI GCTCTTC 1 cut(s) 122
BsrBI CCGCTC 3 cut(s) 706, 772, 1219
BsrFI RCCGGY 5 cut(s) 820, 844, 1162, 1195, 1228
BsrGI TGTACA 7 cut(s) 1008, 1041, 1107, 1140, 1173, 1206, 1239
BssAI RCCGGY 5 cut(s) 820, 844, 1162, 1195, 1228
BssECI CCNNGG 4 cut(s) 1292, 1376, 1460, 1584
BssMI GATC 3 cut(s) 6, 171, 618
BssNAI GTATAC 1 cut(s) 1075
BssT1I CCWWGG 4 cut(s) 1292, 1376, 1460, 1584
Bst1107I GTATAC 1 cut(s) 1075
Bst4CI ACNGT 3 cut(s) 85, 119, 392
Bst6I CTCTTC 2 cut(s) 29, 122
BstAPI GCANNNNNTGC 1 cut(s) 60
BstAUI TGTACA 7 cut(s) 1008, 1041, 1107, 1140, 1173, 1206, 1239
BstC8I GCNNGC 3 cut(s) 52, 194, 221
BstDEI CTNAG 2 cut(s) 123, 573
BstDSI CCRYGG 3 cut(s) 1292, 1376, 1460
BstF5I GGATG 3 cut(s) 252, 511, 1540
BstKTI GATC 3 cut(s) 9, 174, 621
BstMBI GATC 3 cut(s) 6, 171, 618
BstMCI CGRYCG 1 cut(s) 174
BstMWI GCNNNNNNNGC 2 cut(s) 60, 1192
BstNSI RCATGY 1 cut(s) 453
BstSLI GKGCMC 2 cut(s) 198, 992
BstV1I GCAGC 3 cut(s) 24, 66, 328
BstX2I RGATCY 2 cut(s) 6, 618
BstXI CCANNNNNNTGG 4 cut(s) 370, 1293, 1377, 1461
BstYI RGATCY 2 cut(s) 6, 618
BstZ17I GTATAC 1 cut(s) 1075
BsuRI GGCC 3 cut(s) 185, 329, 472
BtgI CCRYGG 3 cut(s) 1292, 1376, 1460
BtsCI GGATG 3 cut(s) 252, 511, 1540
BtsIMutI CAGTG 7 cut(s) 397, 822, 846, 1011, 1143, 1176, 1242
Cac8I GCNNGC 3 cut(s) 52, 194, 221
CaiI CAGNNNCTG 3 cut(s) 1037, 1070, 1103
CciI TCATGA 1 cut(s) 346
Cfr10I RCCGGY 5 cut(s) 820, 844, 1162, 1195, 1228
Cfr13I GGNCC 2 cut(s) 501, 1231
CspAI ACCGGT 2 cut(s) 1162, 1228
CviAII CATG 8 cut(s) 146, 336, 347, 450, 894, 1293, 1377, 1461
DdeI CTNAG 2 cut(s) 123, 573
DpnI GATC 3 cut(s) 8, 173, 620
DpnII GATC 3 cut(s) 6, 171, 618
DraI TTTAAA 1 cut(s) 481
DraIII CACNNNGTG 1 cut(s) 338
Eam1104I CTCTTC 2 cut(s) 29, 122
EarI CTCTTC 2 cut(s) 29, 122
Ecl136II GAGCTC 1 cut(s) 223
Eco130I CCWWGG 4 cut(s) 1292, 1376, 1460, 1584
Eco24I GRGCYC 1 cut(s) 225
Eco47I GGWCC 2 cut(s) 501, 1231
Eco53kI GAGCTC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 452
EcoICRI GAGCTC 1 cut(s) 223
EcoT14I CCWWGG 4 cut(s) 1292, 1376, 1460, 1584
EcoT38I GRGCYC 1 cut(s) 225
ErhI CCWWGG 4 cut(s) 1292, 1376, 1460, 1584
FaeI CATG 8 cut(s) 149, 339, 350, 453, 897, 1296, 1380, 1464
FaqI GGGAC 7 cut(s) 638, 704, 770, 986, 1019, 1085, 1217
FatI CATG 8 cut(s) 145, 335, 346, 449, 893, 1292, 1376, 1460
FauI CCCGC 2 cut(s) 185, 654
FblI GTMKAC 2 cut(s) 915, 1074
Fnu4HI GCNGC 5 cut(s) 38, 55, 342, 704, 770
FokI GGATG 3 cut(s) 239, 498, 1527
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 5 cut(s) 38, 55, 342, 704, 770
FspBI CTAG 1 cut(s) 426
GluI GCNGC 5 cut(s) 38, 55, 342, 704, 770
GsaI CCCAGC 1 cut(s) 964
HaeIII GGCC 3 cut(s) 185, 329, 472
HapII CCGG 5 cut(s) 821, 845, 1163, 1196, 1229
Hin1II CATG 8 cut(s) 149, 339, 350, 453, 897, 1296, 1380, 1464
HinfI GANTC 2 cut(s) 359, 1531
HpaII CCGG 5 cut(s) 821, 845, 1163, 1196, 1229
HphI GGTGA 1 cut(s) 432
Hpy188I TCNGA 1 cut(s) 47
Hpy188III TCNNGA 3 cut(s) 202, 347, 1504
HpyAV CCTTC 1 cut(s) 286
HpyCH4III ACNGT 3 cut(s) 85, 119, 392
HpyCH4V TGCA 4 cut(s) 180, 308, 323, 453
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 1192
HpyF3I CTNAG 2 cut(s) 123, 573
Hsp92II CATG 8 cut(s) 149, 339, 350, 453, 897, 1296, 1380, 1464
Kzo9I GATC 3 cut(s) 6, 171, 618
LguI GCTCTTC 1 cut(s) 122
LmnI GCTCC 5 cut(s) 47, 318, 711, 777, 1224
Lsp1109I GCAGC 3 cut(s) 24, 66, 328
MaeI CTAG 1 cut(s) 426
MaeIII GTNAC 1 cut(s) 166
MalI GATC 3 cut(s) 8, 173, 620
MbiI CCGCTC 3 cut(s) 706, 772, 1219
MboI GATC 3 cut(s) 6, 171, 618
MboII GAAGA 3 cut(s) 16, 16, 139
MflI RGATCY 2 cut(s) 6, 618
MhlI GDGCHC 3 cut(s) 198, 225, 992
MluCI AATT 4 cut(s) 414, 554, 657, 723
MseI TTAA 4 cut(s) 135, 480, 1551, 1591
MslI CAYNNNNRTG 5 cut(s) 368, 448, 1291, 1375, 1459
MspI CCGG 5 cut(s) 821, 845, 1163, 1196, 1229
MwoI GCNNNNNNNGC 2 cut(s) 60, 1192
NcoI CCATGG 3 cut(s) 1292, 1376, 1460
NdeII GATC 3 cut(s) 6, 171, 618
NlaIII CATG 8 cut(s) 149, 339, 350, 453, 897, 1296, 1380, 1464
NlaIV GGNNCC 3 cut(s) 1167, 1200, 1233
NspI RCATGY 1 cut(s) 453
OliI CACNNNNGTG 1 cut(s) 368
PagI TCATGA 1 cut(s) 346
PciSI GCTCTTC 1 cut(s) 122
PfeI GAWTC 2 cut(s) 359, 1531
PinAI ACCGGT 2 cut(s) 1162, 1228
PkrI GCNGC 5 cut(s) 39, 56, 343, 705, 771
Ple19I CGATCG 1 cut(s) 174
Psp124BI GAGCTC 1 cut(s) 225
PspFI CCCAGC 1 cut(s) 960
PspN4I GGNNCC 3 cut(s) 1167, 1200, 1233
PspPI GGNCC 2 cut(s) 501, 1231
PstNI CAGNNNCTG 3 cut(s) 1037, 1070, 1103
PsuI RGATCY 2 cut(s) 6, 618
PvuI CGATCG 1 cut(s) 174
RseI CAYNNNNRTG 5 cut(s) 368, 448, 1291, 1375, 1459
SacI GAGCTC 1 cut(s) 225
SapI GCTCTTC 1 cut(s) 122
SaqAI TTAA 4 cut(s) 135, 480, 1551, 1591
SatI GCNGC 5 cut(s) 38, 55, 342, 704, 770
Sau3AI GATC 3 cut(s) 6, 171, 618
Sau96I GGNCC 2 cut(s) 501, 1231
SduI GDGCHC 3 cut(s) 198, 225, 992
SinI GGWCC 2 cut(s) 501, 1231
SmiMI CAYNNNNRTG 5 cut(s) 368, 448, 1291, 1375, 1459
Sse9I AATT 4 cut(s) 414, 554, 657, 723
SsiI CCGC 7 cut(s) 192, 647, 704, 770, 1184, 1193, 1217
SspI AATATT 1 cut(s) 534
SspMI CTAG 1 cut(s) 426
SstI GAGCTC 1 cut(s) 225
StyI CCWWGG 4 cut(s) 1292, 1376, 1460, 1584
TaaI ACNGT 3 cut(s) 85, 119, 392
TaqI TCGA 2 cut(s) 174, 201
TasI AATT 4 cut(s) 414, 554, 657, 723
TatI WGTACW 8 cut(s) 110, 1008, 1041, 1107, 1140, 1173, 1206, 1239
TauI GCSGC 2 cut(s) 706, 772
TfiI GAWTC 2 cut(s) 359, 1531
Tru1I TTAA 4 cut(s) 135, 480, 1551, 1591
Tru9I TTAA 4 cut(s) 135, 480, 1551, 1591
TscAI CASTG 7 cut(s) 397, 822, 846, 1011, 1143, 1176, 1242
TseI GCWGC 3 cut(s) 37, 54, 341
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 7 cut(s) 397, 822, 846, 1011, 1143, 1176, 1242
VpaK11BI GGWCC 2 cut(s) 501, 1231
XapI RAATTY 1 cut(s) 554
XceI RCATGY 1 cut(s) 453
XcmI CCANNNNNNNNNTGG 1 cut(s) 495
XmiI GTMKAC 2 cut(s) 915, 1074
XspI CTAG 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.