Rh4DG075100

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0014710
Physical Location & Seq
Forward (+)
11138161 .. 11139710
1550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG075100.1

Sequence Viewer

Length: 1179 bp
ATGGCAAGTAGAGGAGGAAGAAAAGGCTCCAACATCAGAGCTTCTTCCAGTGCAGCTGAAGTGGGCAATTCCGAAGATCTCTTGAACGAGATTCTAGTTCGCCTCCCAGCCATACCAATTCTCAGGTTCAAATTAGTTTCAAAACAATGGTACTCCATAATCTCTACCCAAAAATTCACAGTCACTTATGCCAAAAGAAACCCAAACCCTCGCTTGGGGTTTTTGTTGCATACTCGACTTAATTTCCAACCATACCCACCACCTACTCTCTTCCTTTCTTTGGGTGGCTATCAATATGGTAAACACCCAAATTTCCTTGAAATCCCAAAACTTGAAATCCATCATGTCTGTAATGGGTTGTTGTGCTGTTCTAAGCCTCATGTGCATGCTCCTGAAATCACTTCTTATTATGTTTGTAATCATTCTTCTGGGCAATCAAAATGGCTTCGGGTTCTTACAAGTCCATGCATTGAACGTGTAAAGGCTTTTAATTTGGCCTTTGATCCTTTGAAATCACCTCATTACAGGCTCGTTTTTGTTAGTGAATTGTCTTCGTTAGATGAGTACCATTTGATCAAAATTGATATTTACTTATCTGAGACCAAGTCTTGGAGACCCTCCAAGAAGGGGATTTATATTTTGCAATACGATATAGGGTTTCACATTGCCGTTTACTGGAAAGATGCAATTTACTGGTACAATCAGAAGAATCAGTCTTTGTCATATTTCGATTTCTATGACGACAGCGTGGAGAGTTTGCCAAAGCCACAAGTTTCTGGAACCATGACTTATTACTATTTTGGAGAGTCAGGTGGGCATTTGCATCTTGTTGGAGCTTGTAGACCTTGGACTACATTGTTCACTGTCTTCGAAATGAAGGAAGATAGGTCTGGGTGGTTTGTGAAGTGTAATGGTGATTTTGGTGCTTTAGCTGCTGCATTTCCGAAGATGGTTACTAATAAACCAAATAGGCCTTATGTGTTTTCTCTGGTGAACCTATTAAGAGGTGAAAAAGAAGAGGAGTTGATTATTGTGTTAACAATTCCCGAAGGTGTGATTGGGTATAATGTCCAGGATAAGACCTTTGAGAAGCTGTGCAATCTATCTTTGAGTGAACGTAAAATGCAGCAAATGACATTTAAAGCTCATCAATATATCGAGACCGTTGCTTCAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

392

Amino Acids

44.96

Weight (kDa)

9.03

Isoelectric Point (pI)

42.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 25 - 60 5.7e-08 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014710)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g06290 FvH4_4g06330
malus_domestica MD13G1235000.v1.1
prunus_persica Prupe.1G066100_v2.0.a1 Prupe.1G066200_v2.0.a1
pyrus_communis pycom13g20750
rosa_chinensis RchiOBHm_Chr4g0398011
rosa_laevigata RLG00000014125
rosa_roxburghii Rroxscaffold_5G00342970
rosa_rugosa Rorug04G0005500 Rorug06G0022700
rosa_samantha Rh4AG082200 Rh4BG079700 Rh4DG075100 Rh6BG144300 Rh6DG128700
rosa_wichuraiana Rw4G006860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 609
AccI GTMKAC 1 cut(s) 841
AclWI GGATC 1 cut(s) 497
AcsI RAATTY 2 cut(s) 173, 310
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 3 cut(s) 152, 566, 698
AfiI CCNNNNNNNGG 6 cut(s) 214, 215, 280, 609, 627, 675
AflIII ACRYGT 1 cut(s) 475
AgsI TTSAA 8 cut(s) 85, 130, 141, 320, 335, 473, 511, 1173
AjnI CCWGG 1 cut(s) 1071
AjuI GAANNNNNNNTTGG 2 cut(s) 1041, 1073
AluBI AGCT 6 cut(s) 41, 56, 836, 932, 1093, 1145
AluI AGCT 6 cut(s) 41, 56, 836, 932, 1093, 1145
Alw26I GTCTC 3 cut(s) 593, 607, 1154
AlwI GGATC 1 cut(s) 497
AoxI GGCC 2 cut(s) 495, 971
ApeKI GCWGC 4 cut(s) 53, 932, 935, 1126
ApoI RAATTY 2 cut(s) 173, 310
AsuHPI GGTGA 4 cut(s) 507, 926, 1003, 1019
AsuII TTCGAA 1 cut(s) 870
BarI GAAGNNNNNNTAC 2 cut(s) 409, 441
BbsI GAAGAC 2 cut(s) 543, 859
BbvI GCAGC 4 cut(s) 65, 919, 922, 1138
BccI CCATC 2 cut(s) 348, 943
BceAI ACGGC 1 cut(s) 653
BcgI CGANNNNNNTGC 1 cut(s) 1148
BciT130I CCWGG 1 cut(s) 1073
BclI TGATCA 1 cut(s) 573
BcoDI GTCTC 3 cut(s) 593, 607, 1154
BfaI CTAG 1 cut(s) 95
BglII AGATCT 1 cut(s) 76
BisI GCNGC 4 cut(s) 54, 933, 936, 1127
BlsI GCNGC 4 cut(s) 55, 934, 937, 1128
Bme1390I CCNGG 1 cut(s) 1073
BmiI GGNNCC 2 cut(s) 28, 781
BmrFI CCNGG 1 cut(s) 1073
BmsI GCATC 2 cut(s) 673, 832
BpiI GAAGAC 2 cut(s) 543, 859
Bpu14I TTCGAA 1 cut(s) 870
BsaI GGTCTC 3 cut(s) 593, 607, 1154
BsaJI CCNNGG 1 cut(s) 845
Bsc4I CCNNNNNNNGG 6 cut(s) 214, 215, 280, 609, 627, 675
Bse1I ACTGG 3 cut(s) 48, 680, 698
Bse3DI GCAATG 1 cut(s) 663
BseBI CCWGG 1 cut(s) 1073
BseDI CCNNGG 1 cut(s) 845
BseLI CCNNNNNNNGG 6 cut(s) 214, 215, 280, 609, 627, 675
BseMI GCAATG 1 cut(s) 663
BseMII CTCAG 2 cut(s) 136, 588
BseNI ACTGG 3 cut(s) 48, 680, 698
BseRI GAGGAG 2 cut(s) 27, 1034
BseXI GCAGC 4 cut(s) 65, 919, 922, 1138
BseYI CCCAGC 1 cut(s) 106
BsgI GTGCAG 1 cut(s) 72
BshFI GGCC 2 cut(s) 497, 973
BslI CCNNNNNNNGG 6 cut(s) 214, 215, 280, 609, 627, 675
BsmAI GTCTC 3 cut(s) 593, 607, 1154
BsnI GGCC 2 cut(s) 497, 973
Bso31I GGTCTC 3 cut(s) 593, 607, 1154
Bsp119I TTCGAA 1 cut(s) 870
Bsp143I GATC 3 cut(s) 76, 502, 573
BspANI GGCC 2 cut(s) 497, 973
BspCNI CTCAG 2 cut(s) 135, 589
BspLI GGNNCC 2 cut(s) 28, 781
BspPI GGATC 1 cut(s) 497
BspT104I TTCGAA 1 cut(s) 870
BspTNI GGTCTC 3 cut(s) 593, 607, 1154
BsrDI GCAATG 1 cut(s) 663
BsrI ACTGG 3 cut(s) 48, 680, 698
BssECI CCNNGG 1 cut(s) 845
BssMI GATC 3 cut(s) 76, 502, 573
BssT1I CCWWGG 1 cut(s) 845
Bst2UI CCWGG 1 cut(s) 1073
Bst4CI ACNGT 3 cut(s) 181, 865, 1165
Bst6I CTCTTC 2 cut(s) 275, 1011
BstBI TTCGAA 1 cut(s) 870
BstC8I GCNNGC 1 cut(s) 387
BstDEI CTNAG 3 cut(s) 122, 372, 597
BstKTI GATC 3 cut(s) 79, 505, 576
BstMAI GTCTC 3 cut(s) 593, 607, 1154
BstMBI GATC 3 cut(s) 76, 502, 573
BstMWI GCNNNNNNNGC 2 cut(s) 382, 932
BstNI CCWGG 1 cut(s) 1073
BstNSI RCATGY 1 cut(s) 389
BstSCI CCNGG 1 cut(s) 1071
BstV1I GCAGC 4 cut(s) 65, 919, 922, 1138
BstV2I GAAGAC 2 cut(s) 543, 859
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BsuRI GGCC 2 cut(s) 497, 973
BtsIMutI CAGTG 2 cut(s) 55, 861
Cac8I GCNNGC 1 cut(s) 387
Csp6I GTAC 3 cut(s) 151, 565, 697
CviAII CATG 5 cut(s) 344, 380, 386, 465, 784
CviQI GTAC 3 cut(s) 151, 565, 697
DdeI CTNAG 3 cut(s) 122, 372, 597
DpnI GATC 3 cut(s) 78, 504, 575
DpnII GATC 3 cut(s) 76, 502, 573
DraI TTTAAA 1 cut(s) 1141
Eam1104I CTCTTC 2 cut(s) 275, 1011
EarI CTCTTC 2 cut(s) 275, 1011
Eco130I CCWWGG 1 cut(s) 845
Eco147I AGGCCT 1 cut(s) 973
Eco31I GGTCTC 3 cut(s) 593, 607, 1154
Eco57I CTGAAG 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 1071
EcoT14I CCWWGG 1 cut(s) 845
EcoT22I ATGCAT 1 cut(s) 470
ErhI CCWWGG 1 cut(s) 845
FaeI CATG 5 cut(s) 347, 383, 389, 468, 787
FatI CATG 5 cut(s) 343, 379, 385, 464, 783
FbaI TGATCA 1 cut(s) 573
FblI GTMKAC 1 cut(s) 841
Fnu4HI GCNGC 4 cut(s) 54, 933, 936, 1127
Fsp4HI GCNGC 4 cut(s) 54, 933, 936, 1127
FspBI CTAG 1 cut(s) 95
GluI GCNGC 4 cut(s) 54, 933, 936, 1127
GsaI CCCAGC 1 cut(s) 110
HaeIII GGCC 2 cut(s) 497, 973
Hin1II CATG 5 cut(s) 347, 383, 389, 468, 787
HincII GTYRAC 1 cut(s) 1038
HindII GTYRAC 1 cut(s) 1038
HinfI GANTC 3 cut(s) 91, 709, 806
HpaI GTTAAC 1 cut(s) 1038
HphI GGTGA 4 cut(s) 507, 926, 1003, 1019
Hpy166II GTNNAC 7 cut(s) 302, 673, 842, 861, 994, 1038, 1115
Hpy188I TCNGA 5 cut(s) 38, 73, 598, 705, 945
Hpy188III TCNNGA 5 cut(s) 82, 392, 777, 1046, 1159
Hpy8I GTNNAC 7 cut(s) 302, 673, 842, 861, 994, 1038, 1115
HpyAV CCTTC 3 cut(s) 619, 871, 1043
HpyCH4III ACNGT 3 cut(s) 181, 865, 1165
HpyCH4IV ACGT 2 cut(s) 475, 1117
HpyF10VI GCNNNNNNNGC 2 cut(s) 382, 932
HpyF3I CTNAG 3 cut(s) 122, 372, 597
HpySE526I ACGT 2 cut(s) 475, 1117
Hsp92II CATG 5 cut(s) 347, 383, 389, 468, 787
Ksp22I TGATCA 1 cut(s) 573
KspAI GTTAAC 1 cut(s) 1038
Kzo9I GATC 3 cut(s) 76, 502, 573
LmnI GCTCC 3 cut(s) 32, 394, 833
Lsp1109I GCAGC 4 cut(s) 65, 919, 922, 1138
LweI GCATC 2 cut(s) 673, 832
MaeI CTAG 1 cut(s) 95
MaeII ACGT 2 cut(s) 475, 1117
MaeIII GTNAC 2 cut(s) 181, 952
MalI GATC 3 cut(s) 78, 504, 575
MboI GATC 3 cut(s) 76, 502, 573
MflI RGATCY 1 cut(s) 76
MlyI GAGTC 1 cut(s) 815
MmeI TCCRAC 3 cut(s) 54, 271, 811
MnlI CCTC 9 cut(s) 5, 8, 113, 219, 387, 528, 628, 998, 1012
Mph1103I ATGCAT 1 cut(s) 470
MseI TTAA 5 cut(s) 240, 489, 1001, 1037, 1140
MslI CAYNNNNRTG 1 cut(s) 384
MspA1I CMGCKG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 1073
MvaI CCWGG 1 cut(s) 1073
MwoI GCNNNNNNNGC 2 cut(s) 382, 932
NdeII GATC 3 cut(s) 76, 502, 573
NlaIII CATG 5 cut(s) 347, 383, 389, 468, 787
NlaIV GGNNCC 2 cut(s) 28, 781
NmuCI GTSAC 1 cut(s) 181
NsiI ATGCAT 1 cut(s) 470
NspI RCATGY 1 cut(s) 389
NspV TTCGAA 1 cut(s) 870
PaeI GCATGC 1 cut(s) 389
PceI AGGCCT 1 cut(s) 973
PfeI GAWTC 2 cut(s) 91, 709
PflFI GACNNNGTC 1 cut(s) 604
PflMI CCANNNNNTGG 1 cut(s) 609
PfoI TCCNGGA 1 cut(s) 1071
PkrI GCNGC 4 cut(s) 55, 934, 937, 1128
PleI GAGTC 1 cut(s) 814
PpsI GAGTC 1 cut(s) 814
Psp6I CCWGG 1 cut(s) 1071
PspFI CCCAGC 1 cut(s) 106
PspGI CCWGG 1 cut(s) 1071
PspN4I GGNNCC 2 cut(s) 28, 781
PsuI RGATCY 1 cut(s) 76
PsyI GACNNNGTC 1 cut(s) 604
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 3 cut(s) 152, 566, 698
RsaNI GTAC 3 cut(s) 151, 565, 697
RseI CAYNNNNRTG 1 cut(s) 384
SaqAI TTAA 5 cut(s) 240, 489, 1001, 1037, 1140
SatI GCNGC 4 cut(s) 54, 933, 936, 1127
Sau3AI GATC 3 cut(s) 76, 502, 573
SchI GAGTC 1 cut(s) 815
ScrFI CCNGG 1 cut(s) 1073
SfaNI GCATC 2 cut(s) 673, 832
SfuI TTCGAA 1 cut(s) 870
SmiMI CAYNNNNRTG 1 cut(s) 384
SphI GCATGC 1 cut(s) 389
SseBI AGGCCT 1 cut(s) 973
SspMI CTAG 1 cut(s) 95
StuI AGGCCT 1 cut(s) 973
StyD4I CCNGG 1 cut(s) 1071
StyI CCWWGG 1 cut(s) 845
TaaI ACNGT 3 cut(s) 181, 865, 1165
TaiI ACGT 2 cut(s) 478, 1120
TaqI TCGA 4 cut(s) 235, 729, 870, 1158
TfiI GAWTC 2 cut(s) 91, 709
Tru1I TTAA 5 cut(s) 240, 489, 1001, 1037, 1140
Tru9I TTAA 5 cut(s) 240, 489, 1001, 1037, 1140
TscAI CASTG 2 cut(s) 55, 868
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 4 cut(s) 53, 932, 935, 1126
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 1 cut(s) 890
TspRI CASTG 2 cut(s) 55, 868
Tth111I GACNNNGTC 1 cut(s) 604
Van91I CCANNNNNTGG 1 cut(s) 609
XapI RAATTY 2 cut(s) 173, 310
XceI RCATGY 1 cut(s) 389
XmiI GTMKAC 1 cut(s) 841
XspI CTAG 1 cut(s) 95
Zsp2I ATGCAT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.