Rh4BG079700

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0014710
Physical Location & Seq
Forward (+)
13966111 .. 13967286
1176 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG079700.1

Sequence Viewer

Length: 1176 bp
ATGGCAAGTAGAGGAGGAAGAAAAGGCTCCAACATCAGAGCTTCTTCCAGTGCAGCTGAAGTGGGCAAATCCGAAGATCTCTTGAACGAGATTCTAGTTCGCCTCCCAGCCATACCAATTCTCAGGTTCAAATTAGTTTCAAAACAATGGTACTCCATAATCTCTACCCAAAAATTCACAGTCACTTGTGCCAAAAGAAACCCAAACCCTCGCTTGGGGTTTTTGTTGCATACTCGACTTAATTTCCAACCATACCCACCCACTCTCTTCCTTTCTTTGGGTGGCTATCAATATGGTAAACACCCAAATTTCCTTGAAATCCCAAAACTTGAAATCCATCATGTCTGTAATGGGTTGTTGTGCTGTTCTAAGTCTCATGTGCATGCTCCTGAAATCACTTCTTATTATGTTTGTAATCATTCTTCTGGGCAATCAAAATGGCTTCGGGTTCTTAGAAGTCCATGCATTGAACGTGTAAAGGCTTTTAATTTGGCCTTTGATCCTTTGAAATCACCTCATTACAGGCTCATTTTTGTTAGTGAATTGTCTTCGTTAGATGAGTACCATTTGATCAAAATTGATATTTACTTATCTGAGACCGAGTCTTGGAGACCCTCCAAGAAGGGGATTTATATTTTGCAATACGATATAGGGTTTCACAATGCCGTTTACTGGAAGGATGCAATTTACTGGTACAATCAGAAGAATCAGTCTTTGGCATATTTCGATTTCGATGACGACAGCGTGGAGAGTTTGCCAAAGCCACAAGTTTCTGGAACCATGACTTATTACTATTTTGGCGAGTCAGGTGGGCATTTGCATCTTGTTGGAGCTTGTAGACCTTGGACTACATTGTTCACTGTCTTCGAAATGAAGGAAGATAGGTCTGGGTGGTTTGTGAAGTATAATGGTGATTTTGGTGCTTTAGCTGCTGCATTTCCGAAGATGGTTACTAATAAACCAAATAGGCCTTATGTGTTTTTTCTGGTGAACCTATTAAGAGGTGAAAAAGAAGAGGAGTTGATTATTGTGTTAACAATTCCCGAAGGTGTGATTGGGTATAATGTCCAGGATAAGACCTTTGAGAAGCTGTGCAATCTATCTTTGAGTGAACGTAAAATGCAGCAAATGACATTTAAAGCTCATCAATATATCGAGACCATTGCTTCAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

391

Amino Acids

44.95

Weight (kDa)

8.97

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 25 - 60 5.6e-08 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014710)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g06290 FvH4_4g06330
malus_domestica MD13G1235000.v1.1
prunus_persica Prupe.1G066100_v2.0.a1 Prupe.1G066200_v2.0.a1
pyrus_communis pycom13g20750
rosa_chinensis RchiOBHm_Chr4g0398011
rosa_laevigata RLG00000014125
rosa_roxburghii Rroxscaffold_5G00342970
rosa_rugosa Rorug04G0005500 Rorug06G0022700
rosa_samantha Rh4AG082200 Rh4BG079700 Rh4DG075100 Rh6BG144300 Rh6DG128700
rosa_wichuraiana Rw4G006860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 838
AclWI GGATC 1 cut(s) 494
AcsI RAATTY 2 cut(s) 173, 307
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 3 cut(s) 152, 563, 695
AfiI CCNNNNNNNGG 6 cut(s) 214, 215, 277, 606, 624, 672
AflIII ACRYGT 1 cut(s) 472
AgsI TTSAA 8 cut(s) 85, 130, 141, 317, 332, 470, 508, 1170
AjnI CCWGG 1 cut(s) 1068
AjuI GAANNNNNNNTTGG 4 cut(s) 698, 730, 1038, 1070
AluBI AGCT 6 cut(s) 41, 56, 833, 929, 1090, 1142
AluI AGCT 6 cut(s) 41, 56, 833, 929, 1090, 1142
Alw26I GTCTC 4 cut(s) 378, 590, 604, 1151
AlwI GGATC 1 cut(s) 494
AoxI GGCC 2 cut(s) 492, 968
ApeKI GCWGC 4 cut(s) 53, 929, 932, 1123
ApoI RAATTY 2 cut(s) 173, 307
AsuHPI GGTGA 4 cut(s) 504, 923, 1000, 1016
AsuII TTCGAA 1 cut(s) 867
BarI GAAGNNNNNNTAC 2 cut(s) 406, 438
BbsI GAAGAC 2 cut(s) 540, 856
BbvI GCAGC 4 cut(s) 65, 916, 919, 1135
BccI CCATC 2 cut(s) 345, 940
BceAI ACGGC 1 cut(s) 650
BcgI CGANNNNNNTGC 1 cut(s) 1145
BciT130I CCWGG 1 cut(s) 1070
BclI TGATCA 1 cut(s) 570
BcoDI GTCTC 4 cut(s) 378, 590, 604, 1151
BfaI CTAG 1 cut(s) 95
BglII AGATCT 1 cut(s) 76
BisI GCNGC 4 cut(s) 54, 930, 933, 1124
BlsI GCNGC 4 cut(s) 55, 931, 934, 1125
Bme1390I CCNGG 1 cut(s) 1070
BmiI GGNNCC 2 cut(s) 28, 778
BmrFI CCNGG 1 cut(s) 1070
BmsI GCATC 2 cut(s) 670, 829
BpiI GAAGAC 2 cut(s) 540, 856
Bpu14I TTCGAA 1 cut(s) 867
BsaI GGTCTC 3 cut(s) 590, 604, 1151
BsaJI CCNNGG 1 cut(s) 842
Bsc4I CCNNNNNNNGG 6 cut(s) 214, 215, 277, 606, 624, 672
Bse1I ACTGG 3 cut(s) 48, 677, 695
Bse3DI GCAATG 1 cut(s) 1161
BseBI CCWGG 1 cut(s) 1070
BseDI CCNNGG 1 cut(s) 842
BseGI GGATG 1 cut(s) 685
BseLI CCNNNNNNNGG 6 cut(s) 214, 215, 277, 606, 624, 672
BseMI GCAATG 1 cut(s) 1161
BseMII CTCAG 2 cut(s) 136, 585
BseNI ACTGG 3 cut(s) 48, 677, 695
BseRI GAGGAG 2 cut(s) 27, 1031
BseXI GCAGC 4 cut(s) 65, 916, 919, 1135
BseYI CCCAGC 1 cut(s) 106
BsgI GTGCAG 1 cut(s) 72
BshFI GGCC 2 cut(s) 494, 970
BslI CCNNNNNNNGG 6 cut(s) 214, 215, 277, 606, 624, 672
BsmAI GTCTC 4 cut(s) 378, 590, 604, 1151
BsnI GGCC 2 cut(s) 494, 970
Bso31I GGTCTC 3 cut(s) 590, 604, 1151
Bsp119I TTCGAA 1 cut(s) 867
Bsp143I GATC 3 cut(s) 76, 499, 570
BspANI GGCC 2 cut(s) 494, 970
BspCNI CTCAG 2 cut(s) 135, 586
BspLI GGNNCC 2 cut(s) 28, 778
BspPI GGATC 1 cut(s) 494
BspT104I TTCGAA 1 cut(s) 867
BspTNI GGTCTC 3 cut(s) 590, 604, 1151
BsrDI GCAATG 1 cut(s) 1161
BsrI ACTGG 3 cut(s) 48, 677, 695
BssECI CCNNGG 1 cut(s) 842
BssMI GATC 3 cut(s) 76, 499, 570
BssT1I CCWWGG 1 cut(s) 842
Bst2UI CCWGG 1 cut(s) 1070
Bst4CI ACNGT 2 cut(s) 181, 862
Bst6I CTCTTC 2 cut(s) 272, 1008
BstBI TTCGAA 1 cut(s) 867
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 4 cut(s) 122, 369, 452, 594
BstF5I GGATG 1 cut(s) 685
BstKTI GATC 3 cut(s) 79, 502, 573
BstMAI GTCTC 4 cut(s) 378, 590, 604, 1151
BstMBI GATC 3 cut(s) 76, 499, 570
BstMWI GCNNNNNNNGC 1 cut(s) 929
BstNI CCWGG 1 cut(s) 1070
BstNSI RCATGY 1 cut(s) 386
BstSCI CCNGG 1 cut(s) 1068
BstV1I GCAGC 4 cut(s) 65, 916, 919, 1135
BstV2I GAAGAC 2 cut(s) 540, 856
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BsuRI GGCC 2 cut(s) 494, 970
BtsCI GGATG 1 cut(s) 685
BtsIMutI CAGTG 2 cut(s) 55, 858
Cac8I GCNNGC 1 cut(s) 384
Csp6I GTAC 3 cut(s) 151, 562, 694
CviAII CATG 5 cut(s) 341, 377, 383, 462, 781
CviQI GTAC 3 cut(s) 151, 562, 694
DdeI CTNAG 4 cut(s) 122, 369, 452, 594
DpnI GATC 3 cut(s) 78, 501, 572
DpnII GATC 3 cut(s) 76, 499, 570
DraI TTTAAA 1 cut(s) 1138
Eam1104I CTCTTC 2 cut(s) 272, 1008
EarI CTCTTC 2 cut(s) 272, 1008
Eco130I CCWWGG 1 cut(s) 842
Eco147I AGGCCT 1 cut(s) 970
Eco31I GGTCTC 3 cut(s) 590, 604, 1151
Eco57I CTGAAG 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 1068
EcoT14I CCWWGG 1 cut(s) 842
EcoT22I ATGCAT 1 cut(s) 467
ErhI CCWWGG 1 cut(s) 842
FaeI CATG 5 cut(s) 344, 380, 386, 465, 784
FatI CATG 5 cut(s) 340, 376, 382, 461, 780
FbaI TGATCA 1 cut(s) 570
FblI GTMKAC 1 cut(s) 838
Fnu4HI GCNGC 4 cut(s) 54, 930, 933, 1124
FokI GGATG 1 cut(s) 692
Fsp4HI GCNGC 4 cut(s) 54, 930, 933, 1124
FspBI CTAG 1 cut(s) 95
GluI GCNGC 4 cut(s) 54, 930, 933, 1124
GsaI CCCAGC 1 cut(s) 110
HaeIII GGCC 2 cut(s) 494, 970
Hin1II CATG 5 cut(s) 344, 380, 386, 465, 784
HincII GTYRAC 1 cut(s) 1035
HindII GTYRAC 1 cut(s) 1035
HinfI GANTC 4 cut(s) 91, 602, 706, 803
HpaI GTTAAC 1 cut(s) 1035
HphI GGTGA 4 cut(s) 504, 923, 1000, 1016
Hpy166II GTNNAC 7 cut(s) 299, 670, 839, 858, 991, 1035, 1112
Hpy188I TCNGA 5 cut(s) 38, 73, 595, 702, 942
Hpy188III TCNNGA 5 cut(s) 82, 389, 774, 1043, 1156
Hpy8I GTNNAC 7 cut(s) 299, 670, 839, 858, 991, 1035, 1112
HpyAV CCTTC 4 cut(s) 616, 670, 868, 1040
HpyCH4III ACNGT 2 cut(s) 181, 862
HpyCH4IV ACGT 2 cut(s) 472, 1114
HpyF10VI GCNNNNNNNGC 1 cut(s) 929
HpyF3I CTNAG 4 cut(s) 122, 369, 452, 594
HpySE526I ACGT 2 cut(s) 472, 1114
Hsp92II CATG 5 cut(s) 344, 380, 386, 465, 784
Ksp22I TGATCA 1 cut(s) 570
KspAI GTTAAC 1 cut(s) 1035
Kzo9I GATC 3 cut(s) 76, 499, 570
LmnI GCTCC 3 cut(s) 32, 391, 830
Lsp1109I GCAGC 4 cut(s) 65, 916, 919, 1135
LweI GCATC 2 cut(s) 670, 829
MaeI CTAG 1 cut(s) 95
MaeII ACGT 2 cut(s) 472, 1114
MaeIII GTNAC 2 cut(s) 181, 949
MalI GATC 3 cut(s) 78, 501, 572
MboI GATC 3 cut(s) 76, 499, 570
MflI RGATCY 1 cut(s) 76
MlyI GAGTC 2 cut(s) 611, 812
MmeI TCCRAC 3 cut(s) 54, 271, 808
MnlI CCTC 8 cut(s) 5, 8, 113, 219, 525, 625, 995, 1009
Mph1103I ATGCAT 1 cut(s) 467
MseI TTAA 5 cut(s) 240, 486, 998, 1034, 1137
MslI CAYNNNNRTG 1 cut(s) 381
MspA1I CMGCKG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 1070
MvaI CCWGG 1 cut(s) 1070
MwoI GCNNNNNNNGC 1 cut(s) 929
NdeII GATC 3 cut(s) 76, 499, 570
NlaIII CATG 5 cut(s) 344, 380, 386, 465, 784
NlaIV GGNNCC 2 cut(s) 28, 778
NmuCI GTSAC 1 cut(s) 181
NsiI ATGCAT 1 cut(s) 467
NspI RCATGY 1 cut(s) 386
NspV TTCGAA 1 cut(s) 867
PaeI GCATGC 1 cut(s) 386
PceI AGGCCT 1 cut(s) 970
PfeI GAWTC 2 cut(s) 91, 706
PflFI GACNNNGTC 1 cut(s) 601
PfoI TCCNGGA 1 cut(s) 1068
PkrI GCNGC 4 cut(s) 55, 931, 934, 1125
PleI GAGTC 2 cut(s) 610, 811
PpsI GAGTC 2 cut(s) 610, 811
Psp6I CCWGG 1 cut(s) 1068
PspFI CCCAGC 1 cut(s) 106
PspGI CCWGG 1 cut(s) 1068
PspN4I GGNNCC 2 cut(s) 28, 778
PsuI RGATCY 1 cut(s) 76
PsyI GACNNNGTC 1 cut(s) 601
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 3 cut(s) 152, 563, 695
RsaNI GTAC 3 cut(s) 151, 562, 694
RseI CAYNNNNRTG 1 cut(s) 381
SaqAI TTAA 5 cut(s) 240, 486, 998, 1034, 1137
SatI GCNGC 4 cut(s) 54, 930, 933, 1124
Sau3AI GATC 3 cut(s) 76, 499, 570
SchI GAGTC 2 cut(s) 611, 812
ScrFI CCNGG 1 cut(s) 1070
SfaNI GCATC 2 cut(s) 670, 829
SfuI TTCGAA 1 cut(s) 867
SmiMI CAYNNNNRTG 1 cut(s) 381
SphI GCATGC 1 cut(s) 386
SseBI AGGCCT 1 cut(s) 970
SspMI CTAG 1 cut(s) 95
StuI AGGCCT 1 cut(s) 970
StyD4I CCNGG 1 cut(s) 1068
StyI CCWWGG 1 cut(s) 842
TaaI ACNGT 2 cut(s) 181, 862
TaiI ACGT 2 cut(s) 475, 1117
TaqI TCGA 5 cut(s) 235, 726, 732, 867, 1155
TaqII GACCGA 1 cut(s) 614
TfiI GAWTC 2 cut(s) 91, 706
Tru1I TTAA 5 cut(s) 240, 486, 998, 1034, 1137
Tru9I TTAA 5 cut(s) 240, 486, 998, 1034, 1137
TscAI CASTG 2 cut(s) 55, 865
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 4 cut(s) 53, 929, 932, 1123
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 1 cut(s) 887
TspRI CASTG 2 cut(s) 55, 865
Tth111I GACNNNGTC 1 cut(s) 601
XapI RAATTY 2 cut(s) 173, 307
XceI RCATGY 1 cut(s) 386
XmiI GTMKAC 1 cut(s) 838
XspI CTAG 1 cut(s) 95
Zsp2I ATGCAT 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.