Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005830

Physical Location & Seq

Genomic Coordinates Forward (+)

14464250 .. 14470835

Gene Structure 6586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g10770.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGGAGGCGGTTCCAACTTATGTTTAGTTTTGCAGGTGCTGATCGTTGTTCAATTGTCAGCAAGGATCTCGGGTATCAGGAAGGATGTGGGTTTTCTTGGGAAGCAATTTTGCAGAAGTACAGTCCAAGGAAGATACTTAGTTTCTGACGATAGTGGGCATGTCTGTGACGCTCTCTCCATAAACCCTCAATCTCGCTGCTGCCCTGAAACAGGACACAAGTTCTCTTGTCATGGTTGCAACCTTGTTTCAGAATGCTGTGATTCTTACGAGTATTGCGTTTCCTGTTGTCTACATCCTTCAAGGATAATCAAGGAACAAGCACTGGAGGTCAAGATTGCCAAGCCTGCTTCTGCAGCGAAATATTCAAGTGTGTTTGATTTCTGTGCCGGGAGGTGCCGGCATAATTCTGAGAGTGTGGTACATGAGAATGCTTACCGTAGTGAGTTCCATCACTGTTTTTCTCTGCCTTCAAACTCTTCAGCAGCTGCAAATTATACGTTTTTAGAAGCTAGACTGAATGGCATTAATGTTCTTGTTGGAAGGCAAGGTGAATCTTGCGACTCGGTTTGCAAGTCAAAGGGACAGTCATGTGTTCCAAACAAGCTTTTGGTACTTAATCAGTGTGACATTATCCAGAAATATATGAGCTGCAAGGGAACTTGCCTGGCCAGTATTGGATCAGATCAGCCTGCGGAAGTTGTTGATGACGCCCCTGAACATTTGAATCCTGGAGCATGCTTGTATACCCAAACACAATCCATGCTTTCTTGTTATGGTTCACATCAGCATACAAGGAGGCTTTGCCCTTGTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2054 Glyco_transf_18

Protein Analysis

273

Amino Acids

29.54

Weight (kDa)

7.72

Isoelectric Point (pI)

54.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPRING1	PF10218	36 - 154	1.3e-36	SREBP regulating gene protein
Glyco_transf_18	PF15024	174 - 271	1.5e-06	Glycosyltransferase family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59390 AT3G59390
fragaria_vesca	FvH4_4g10770 FvH4_4g10770 FvH4_4g10770 FvH4_4g10770
malus_domestica	MD04G1040100.v1.1
prunus_persica	Prupe.1G192800_v2.0.a1 Prupe.1G192800_v2.0.a1 Prupe.1G192800_v2.0.a1 Prupe.1G192800_v2.0.a1 Prupe.1G193700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0406391 RchiOBHm_Chr4g0406831
rosa_laevigata	RLG00000008753 RLG00000008755
rosa_multiflora	Rmu_sc0008087.1_g000003
rosa_roxburghii	Rroxscaffold_5G00351600
rosa_rugosa	Rorug04G0074200 Rorug04G0074300 Rorug04G0085000.1
rosa_samantha	Rh4AG141200 Rh4BG137600 Rh4CG147900 Rh4DG134900 Rh4DG135000
rosa_wichuraiana	Rw4G011470 Rw4G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	25
Acc36I	ACCTGC	1 cut(s)	25
AccB1I	GGYRCC	1 cut(s)	396
AccI	GTMKAC	2 cut(s)	292, 746
AciI	CCGC	2 cut(s)	9, 695
AclWI	GGATC	2 cut(s)	74, 688
AcoI	YGGCCR	1 cut(s)	669
AcuI	CTGAAG	1 cut(s)	465
AcyI	GRCGYC	1 cut(s)	711
AfaI	GTAC	3 cut(s)	121, 423, 615
AfiI	CCNNNNNNNGG	1 cut(s)	212
AgsI	TTSAA	5 cut(s)	53, 303, 369, 474, 727
AjnI	CCWGG	2 cut(s)	666, 730
AluBI	AGCT	4 cut(s)	488, 512, 607, 651
AluI	AGCT	4 cut(s)	488, 512, 607, 651
AlwI	GGATC	2 cut(s)	74, 688
AlwNI	CAGNNNCTG	2 cut(s)	40, 488
Ama87I	CYCGRG	1 cut(s)	70
AoxI	GGCC	1 cut(s)	669
ApeKI	GCWGC	6 cut(s)	198, 201, 356, 485, 488, 651
ArsI	GACNNNNNNTTYG	2 cut(s)	572, 604
AseI	ATTAAT	1 cut(s)	528
AsuC2I	CCSGG	1 cut(s)	391
AsuHPI	GGTGA	1 cut(s)	563
AvaI	CYCGRG	1 cut(s)	70
BalI	TGGCCA	1 cut(s)	671
BanI	GGYRCC	1 cut(s)	396
BbvI	GCAGC	6 cut(s)	185, 188, 368, 475, 497, 638
BccI	CCATC	1 cut(s)	459
BcgI	CGANNNNNNTGC	2 cut(s)	51, 85
BciT130I	CCWGG	2 cut(s)	668, 732
BcnI	CCSGG	1 cut(s)	391
BfaI	CTAG	1 cut(s)	513
BfmI	CTRYAG	1 cut(s)	354
BfuAI	ACCTGC	1 cut(s)	25
BisI	GCNGC	6 cut(s)	199, 202, 357, 486, 489, 652
BlsI	GCNGC	6 cut(s)	200, 203, 358, 487, 490, 653
Bme1390I	CCNGG	3 cut(s)	391, 668, 732
BmeT110I	CYCGRG	1 cut(s)	70
BmiI	GGNNCC	2 cut(s)	13, 398
BmrFI	CCNGG	3 cut(s)	391, 668, 732
BpmI	CTGGAG	2 cut(s)	347, 753
BpuMI	CCSGG	1 cut(s)	391
BsaHI	GRCGYC	1 cut(s)	711
BsaJI	CCNNGG	1 cut(s)	127
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse118I	RCCGGY	1 cut(s)	399
Bse1I	ACTGG	2 cut(s)	330, 672
BseBI	CCWGG	2 cut(s)	668, 732
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	2 cut(s)	91, 295
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMII	CTCAG	1 cut(s)	402
BseNI	ACTGG	2 cut(s)	330, 672
BseXI	GCAGC	6 cut(s)	185, 188, 368, 475, 497, 638
BshFI	GGCC	1 cut(s)	671
BshNI	GGYRCC	1 cut(s)	396
BsiHKCI	CYCGRG	1 cut(s)	70
BsiSI	CCGG	2 cut(s)	390, 400
BslFI	GGGAC	1 cut(s)	597
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	597
BsmI	GAATGC	2 cut(s)	260, 436
BsnI	GGCC	1 cut(s)	671
BsoBI	CYCGRG	1 cut(s)	70
Bsp143I	GATC	4 cut(s)	42, 66, 680, 685
BspACI	CCGC	2 cut(s)	9, 695
BspANI	GGCC	1 cut(s)	671
BspCNI	CTCAG	1 cut(s)	403
BspLI	GGNNCC	2 cut(s)	13, 398
BspMAI	CTGCAG	1 cut(s)	358
BspMI	ACCTGC	1 cut(s)	25
BspPI	GGATC	2 cut(s)	74, 688
BspT107I	GGYRCC	1 cut(s)	396
BsrFI	RCCGGY	1 cut(s)	399
BsrI	ACTGG	2 cut(s)	330, 672
BssAI	RCCGGY	1 cut(s)	399
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	4 cut(s)	42, 66, 680, 685
BssNAI	GTATAC	1 cut(s)	747
BssNI	GRCGYC	1 cut(s)	711
BssT1I	CCWWGG	1 cut(s)	127
Bst1107I	GTATAC	1 cut(s)	747
Bst2UI	CCWGG	2 cut(s)	668, 732
Bst4CI	ACNGT	4 cut(s)	124, 440, 458, 588
Bst6I	CTCTTC	1 cut(s)	484
BstACI	GRCGYC	1 cut(s)	711
BstC8I	GCNNGC	4 cut(s)	348, 401, 693, 739
BstDEI	CTNAG	2 cut(s)	139, 411
BstENI	CCTNNNNNAGG	1 cut(s)	210
BstF5I	GGATG	2 cut(s)	91, 295
BstKTI	GATC	4 cut(s)	45, 69, 683, 688
BstMBI	GATC	4 cut(s)	42, 66, 680, 685
BstMWI	GCNNNNNNNGC	2 cut(s)	347, 356
BstNI	CCWGG	2 cut(s)	668, 732
BstNSI	RCATGY	2 cut(s)	164, 741
BstSCI	CCNGG	3 cut(s)	389, 666, 730
BstSFI	CTRYAG	1 cut(s)	354
BstV1I	GCAGC	6 cut(s)	185, 188, 368, 475, 497, 638
BstX2I	RGATCY	1 cut(s)	66
BstYI	RGATCY	1 cut(s)	66
BstZ17I	GTATAC	1 cut(s)	747
BsuRI	GGCC	1 cut(s)	671
BtsCI	GGATG	2 cut(s)	91, 295
BtsIMutI	CAGTG	3 cut(s)	323, 454, 629
BveI	ACCTGC	1 cut(s)	25
Cac8I	GCNNGC	4 cut(s)	348, 401, 693, 739
CaiI	CAGNNNCTG	2 cut(s)	40, 488
Cfr10I	RCCGGY	1 cut(s)	399
CseI	GACGC	2 cut(s)	179, 719
Csp6I	GTAC	3 cut(s)	120, 422, 614
CviAII	CATG	6 cut(s)	161, 233, 425, 591, 738, 763
CviJI	RGCY	8 cut(s)	346, 488, 512, 607, 651, 671, 691, 802
CviKI_1	RGCY	8 cut(s)	346, 488, 512, 607, 651, 671, 691, 802
CviQI	GTAC	3 cut(s)	120, 422, 614
DdeI	CTNAG	2 cut(s)	139, 411
DpnI	GATC	4 cut(s)	44, 68, 682, 687
DpnII	GATC	4 cut(s)	42, 66, 680, 685
EaeI	YGGCCR	1 cut(s)	669
Eam1104I	CTCTTC	1 cut(s)	484
EarI	CTCTTC	1 cut(s)	484
Eco130I	CCWWGG	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	465
Eco88I	CYCGRG	1 cut(s)	70
EcoNI	CCTNNNNNAGG	1 cut(s)	210
EcoRII	CCWGG	2 cut(s)	666, 730
EcoT14I	CCWWGG	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	6 cut(s)	164, 236, 428, 594, 741, 766
FaqI	GGGAC	1 cut(s)	597
FatI	CATG	6 cut(s)	160, 232, 424, 590, 737, 762
FblI	GTMKAC	2 cut(s)	292, 746
Fnu4HI	GCNGC	6 cut(s)	199, 202, 357, 486, 489, 652
FokI	GGATG	2 cut(s)	98, 282
Fsp4HI	GCNGC	6 cut(s)	199, 202, 357, 486, 489, 652
FspBI	CTAG	1 cut(s)	513
GluI	GCNGC	6 cut(s)	199, 202, 357, 486, 489, 652
GsuI	CTGGAG	2 cut(s)	347, 753
HaeIII	GGCC	1 cut(s)	671
HapII	CCGG	2 cut(s)	390, 400
HgaI	GACGC	2 cut(s)	179, 719
Hin1I	GRCGYC	1 cut(s)	711
Hin1II	CATG	6 cut(s)	164, 236, 428, 594, 741, 766
HindIII	AAGCTT	1 cut(s)	605
HinfI	GANTC	4 cut(s)	263, 554, 563, 727
HpaII	CCGG	2 cut(s)	390, 400
HphI	GGTGA	1 cut(s)	563
Hpy166II	GTNNAC	3 cut(s)	293, 747, 782
Hpy188I	TCNGA	4 cut(s)	148, 253, 412, 685
Hpy188III	TCNNGA	3 cut(s)	79, 334, 637
Hpy8I	GTNNAC	3 cut(s)	293, 747, 782
HpyAV	CCTTC	4 cut(s)	76, 309, 480, 537
HpyCH4III	ACNGT	4 cut(s)	124, 440, 458, 588
HpyCH4IV	ACGT	1 cut(s)	500
HpyCH4V	TGCA	8 cut(s)	34, 114, 240, 356, 491, 573, 654, 815
HpyF10VI	GCNNNNNNNGC	2 cut(s)	347, 356
HpyF3I	CTNAG	2 cut(s)	139, 411
HpySE526I	ACGT	1 cut(s)	500
Hsp92I	GRCGYC	1 cut(s)	711
Hsp92II	CATG	6 cut(s)	164, 236, 428, 594, 741, 766
KroI	GCCGGC	1 cut(s)	399
KroNI	GCCGGC	1 cut(s)	401
Kzo9I	GATC	4 cut(s)	42, 66, 680, 685
LmnI	GCTCC	1 cut(s)	734
Lsp1109I	GCAGC	6 cut(s)	185, 188, 368, 475, 497, 638
MaeI	CTAG	1 cut(s)	513
MaeII	ACGT	1 cut(s)	500
MaeIII	GTNAC	2 cut(s)	167, 626
MalI	GATC	4 cut(s)	44, 68, 682, 687
MboI	GATC	4 cut(s)	42, 66, 680, 685
MboII	GAAGA	2 cut(s)	144, 471
MfeI	CAATTG	1 cut(s)	53
MflI	RGATCY	1 cut(s)	66
MlsI	TGGCCA	1 cut(s)	671
MluCI	AATT	4 cut(s)	53, 107, 406, 493
MluNI	TGGCCA	1 cut(s)	671
MlyI	GAGTC	1 cut(s)	557
MmeI	TCCRAC	2 cut(s)	39, 520
MnlI	CCTC	4 cut(s)	198, 322, 387, 792
Mox20I	TGGCCA	1 cut(s)	671
MroNI	GCCGGC	1 cut(s)	399
MscI	TGGCCA	1 cut(s)	671
MseI	TTAA	2 cut(s)	528, 618
MslI	CAYNNNNRTG	2 cut(s)	165, 429
Msp20I	TGGCCA	1 cut(s)	671
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	2 cut(s)	390, 400
MspR9I	CCNGG	3 cut(s)	391, 668, 732
MunI	CAATTG	1 cut(s)	53
Mva1269I	GAATGC	2 cut(s)	260, 436
MvaI	CCWGG	2 cut(s)	668, 732
MwoI	GCNNNNNNNGC	2 cut(s)	347, 356
NaeI	GCCGGC	1 cut(s)	401
NciI	CCSGG	1 cut(s)	391
NdeII	GATC	4 cut(s)	42, 66, 680, 685
NgoMIV	GCCGGC	1 cut(s)	399
NlaIII	CATG	6 cut(s)	164, 236, 428, 594, 741, 766
NlaIV	GGNNCC	2 cut(s)	13, 398
NmuCI	GTSAC	2 cut(s)	167, 626
NspI	RCATGY	2 cut(s)	164, 741
PaeI	GCATGC	1 cut(s)	741
PaqCI	CACCTGC	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PctI	GAATGC	2 cut(s)	260, 436
PdiI	GCCGGC	1 cut(s)	401
PfeI	GAWTC	3 cut(s)	263, 554, 727
PfoI	TCCNGGA	1 cut(s)	730
PkrI	GCNGC	6 cut(s)	200, 203, 358, 487, 490, 653
PleI	GAGTC	1 cut(s)	557
PpsI	GAGTC	1 cut(s)	557
PshBI	ATTAAT	1 cut(s)	528
Psp6I	CCWGG	2 cut(s)	666, 730
PspGI	CCWGG	2 cut(s)	666, 730
PspN4I	GGNNCC	2 cut(s)	13, 398
PstI	CTGCAG	1 cut(s)	358
PstNI	CAGNNNCTG	2 cut(s)	40, 488
PsuI	RGATCY	1 cut(s)	66
PvuII	CAGCTG	1 cut(s)	488
RsaI	GTAC	3 cut(s)	121, 423, 615
RsaNI	GTAC	3 cut(s)	120, 422, 614
RseI	CAYNNNNRTG	2 cut(s)	165, 429
SaqAI	TTAA	2 cut(s)	528, 618
SatI	GCNGC	6 cut(s)	199, 202, 357, 486, 489, 652
Sau3AI	GATC	4 cut(s)	42, 66, 680, 685
SchI	GAGTC	1 cut(s)	557
ScrFI	CCNGG	3 cut(s)	391, 668, 732
SfcI	CTRYAG	1 cut(s)	354
SmiMI	CAYNNNNRTG	2 cut(s)	165, 429
SphI	GCATGC	1 cut(s)	741
Sse9I	AATT	4 cut(s)	53, 107, 406, 493
SsiI	CCGC	2 cut(s)	9, 695
SspI	AATATT	1 cut(s)	365
SspMI	CTAG	1 cut(s)	513
StyD4I	CCNGG	3 cut(s)	389, 666, 730
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	4 cut(s)	124, 440, 458, 588
TaiI	ACGT	1 cut(s)	503
TasI	AATT	4 cut(s)	53, 107, 406, 493
TatI	WGTACW	1 cut(s)	119
TfiI	GAWTC	3 cut(s)	263, 554, 727
Tru1I	TTAA	2 cut(s)	528, 618
Tru9I	TTAA	2 cut(s)	528, 618
TscAI	CASTG	3 cut(s)	330, 461, 629
TseFI	GTSAC	2 cut(s)	167, 626
TseI	GCWGC	6 cut(s)	198, 201, 356, 485, 488, 651
Tsp45I	GTSAC	2 cut(s)	167, 626
TspRI	CASTG	3 cut(s)	330, 461, 629
VspI	ATTAAT	1 cut(s)	528
XagI	CCTNNNNNAGG	1 cut(s)	210
XceI	RCATGY	2 cut(s)	164, 741
XmiI	GTMKAC	2 cut(s)	292, 746
XspI	CTAG	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.