Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005830

Physical Location & Seq

Genomic Coordinates Reverse (-)

32621995 .. 32628032

Gene Structure 6038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG147900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAGAATGTCCATATCCCGATTAAGCCTATACTGTTTGTTTCTGCACGTCTTCTTCATCCTTGGGATCTCGGCTATCAGGAAGGATGTGGGCTTTCTTCAGAAGCAGTTTTGCAGAAATACAGTTCAAGGAAGATACTTACTGTCTGATGATAATGGCCATGTCTGTGACGCACTGTCAGTAAATCCTCAGTCTCGCTGCTGCCCTGAAAAAGGAGACAAGTTCTCTTGTCATGGTTGCAATGCTGTCTCAGAGTGCTGTAATTCTTATGAGTATTGCGTTTCGTGTTGTCAAGATCCTTCAAGGATAATAAAGGAACAAGTACTGGAAGTGAAGATTGCCAAGCCAGCTTCTGCAGGGAAATATTCCAGTGTTTTTGATTTCTGTGCTGGAAGGTGCCGGCATAATTCTGAGAGTGTGGTTCACGAAAATGCTTACCGTAGTGATTTCCATCACTGTTTTTCTCTGCCTTCAAATTCTTCAGCTGTGAATTATACGTTTTTAGAAGCCAGACTGAATGGCATTAATGTTCTTGTTGGAAGGCAAGGTGAATCCTGCGACTTGGTTTGCAAATCAAAGGGACAGTCATGTGTTCCAAATAAGCTTTTGGTACTTAATCAGTGTGACATTATCCAGAGATATATGAGCTGCAAGGGAACTTGCCTGGCCAGTATTGGATCAGATCAACCTGCCGAAGTTGTCGATGACGCTCCTGAACATTTGAATCCTGGAGCATGCTTGTATACCCAAACACAATCCATGCTTTCTTGTTATGGTTCACATCAGCATACAAGGAGGCTTTGCCCTTGTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2054 Glyco_transf_18

Protein Analysis

271

Amino Acids

30.02

Weight (kDa)

7.94

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPRING1	PF10218	34 - 154	1.8e-36	SREBP regulating gene protein
Glyco_transf_18	PF15024	173 - 270	3.4e-06	Glycosyltransferase family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59390 AT3G59390
fragaria_vesca	FvH4_4g10770 FvH4_4g10770 FvH4_4g10770 FvH4_4g10770
malus_domestica	MD04G1040100.v1.1
prunus_persica	Prupe.1G192800_v2.0.a1 Prupe.1G192800_v2.0.a1 Prupe.1G192800_v2.0.a1 Prupe.1G192800_v2.0.a1 Prupe.1G193700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0406391 RchiOBHm_Chr4g0406831
rosa_laevigata	RLG00000008753 RLG00000008755
rosa_multiflora	Rmu_sc0008087.1_g000003
rosa_roxburghii	Rroxscaffold_5G00351600
rosa_rugosa	Rorug04G0074200 Rorug04G0074300 Rorug04G0085000.1
rosa_samantha	Rh4AG141200 Rh4BG137600 Rh4CG147900 Rh4DG134900 Rh4DG135000
rosa_wichuraiana	Rw4G011470 Rw4G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	697
AccB1I	GGYRCC	1 cut(s)	396
AccI	GTMKAC	1 cut(s)	743
AclWI	GGATC	3 cut(s)	74, 290, 685
AcoI	YGGCCR	2 cut(s)	157, 666
AcsI	RAATTY	1 cut(s)	475
AcuI	CTGAAG	2 cut(s)	83, 465
AfaI	GTAC	2 cut(s)	324, 612
AfiI	CCNNNNNNNGG	1 cut(s)	212
AgsI	TTSAA	4 cut(s)	128, 303, 474, 724
AhdI	GACNNNNNGTC	1 cut(s)	175
AjiI	CACGTC	1 cut(s)	49
AjnI	CCWGG	2 cut(s)	663, 727
AluBI	AGCT	4 cut(s)	350, 485, 604, 648
AluI	AGCT	4 cut(s)	350, 485, 604, 648
Alw26I	GTCTC	3 cut(s)	198, 210, 253
AlwI	GGATC	3 cut(s)	74, 290, 685
AlwNI	CAGNNNCTG	1 cut(s)	353
AoxI	GGCC	2 cut(s)	157, 666
ApeKI	GCWGC	3 cut(s)	198, 201, 648
ApoI	RAATTY	1 cut(s)	475
ArsI	GACNNNNNNTTYG	2 cut(s)	569, 601
AseI	ATTAAT	1 cut(s)	525
AsuHPI	GGTGA	1 cut(s)	560
BalI	TGGCCA	2 cut(s)	159, 668
BanI	GGYRCC	1 cut(s)	396
BbsI	GAAGAC	1 cut(s)	43
BbvI	GCAGC	3 cut(s)	185, 188, 635
BccI	CCATC	1 cut(s)	459
BciT130I	CCWGG	2 cut(s)	665, 729
BcoDI	GTCTC	3 cut(s)	198, 210, 253
BfmI	CTRYAG	1 cut(s)	354
BfuAI	ACCTGC	1 cut(s)	697
BisI	GCNGC	3 cut(s)	199, 202, 649
BlsI	GCNGC	3 cut(s)	200, 203, 650
BmcAI	AGTACT	1 cut(s)	324
Bme1390I	CCNGG	2 cut(s)	665, 729
BmeRI	GACNNNNNGTC	1 cut(s)	175
BmgBI	CACGTC	1 cut(s)	49
BmiI	GGNNCC	1 cut(s)	398
BmrFI	CCNGG	2 cut(s)	665, 729
BpiI	GAAGAC	1 cut(s)	43
BpmI	CTGGAG	1 cut(s)	750
BsaBI	GATNNNNATC	1 cut(s)	450
BsaJI	CCNNGG	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse118I	RCCGGY	1 cut(s)	399
Bse1I	ACTGG	3 cut(s)	330, 369, 669
Bse3DI	GCAATG	1 cut(s)	247
Bse8I	GATNNNNATC	1 cut(s)	450
BseBI	CCWGG	2 cut(s)	665, 729
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	2 cut(s)	57, 91
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMI	GCAATG	1 cut(s)	247
BseMII	CTCAG	3 cut(s)	203, 264, 402
BseNI	ACTGG	3 cut(s)	330, 369, 669
BseXI	GCAGC	3 cut(s)	185, 188, 635
BsgI	GTGCAG	1 cut(s)	29
BshFI	GGCC	2 cut(s)	159, 668
BshNI	GGYRCC	1 cut(s)	396
BsiSI	CCGG	1 cut(s)	400
BslFI	GGGAC	1 cut(s)	594
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmAI	GTCTC	3 cut(s)	198, 210, 253
BsmFI	GGGAC	1 cut(s)	594
BsnI	GGCC	2 cut(s)	159, 668
Bsp143I	GATC	4 cut(s)	66, 295, 677, 682
BspANI	GGCC	2 cut(s)	159, 668
BspCNI	CTCAG	3 cut(s)	202, 263, 403
BspLI	GGNNCC	1 cut(s)	398
BspMAI	CTGCAG	1 cut(s)	358
BspMI	ACCTGC	1 cut(s)	697
BspPI	GGATC	3 cut(s)	74, 290, 685
BspT107I	GGYRCC	1 cut(s)	396
BsrDI	GCAATG	1 cut(s)	247
BsrFI	RCCGGY	1 cut(s)	399
BsrI	ACTGG	3 cut(s)	330, 369, 669
BssAI	RCCGGY	1 cut(s)	399
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	4 cut(s)	66, 295, 677, 682
BssNAI	GTATAC	1 cut(s)	744
BssT1I	CCWWGG	1 cut(s)	61
Bst1107I	GTATAC	1 cut(s)	744
Bst2UI	CCWGG	2 cut(s)	665, 729
Bst4CI	ACNGT	7 cut(s)	35, 124, 144, 177, 440, 458, 585
BstC8I	GCNNGC	3 cut(s)	348, 401, 736
BstDEI	CTNAG	3 cut(s)	189, 250, 411
BstENI	CCTNNNNNAGG	1 cut(s)	210
BstF5I	GGATG	2 cut(s)	57, 91
BstKTI	GATC	4 cut(s)	69, 298, 680, 685
BstMAI	GTCTC	3 cut(s)	198, 210, 253
BstMBI	GATC	4 cut(s)	66, 295, 677, 682
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstNI	CCWGG	2 cut(s)	665, 729
BstNSI	RCATGY	1 cut(s)	738
BstSCI	CCNGG	2 cut(s)	663, 727
BstSFI	CTRYAG	1 cut(s)	354
BstV1I	GCAGC	3 cut(s)	185, 188, 635
BstV2I	GAAGAC	1 cut(s)	43
BstX2I	RGATCY	2 cut(s)	66, 295
BstYI	RGATCY	2 cut(s)	66, 295
BstZ17I	GTATAC	1 cut(s)	744
BsuRI	GGCC	2 cut(s)	159, 668
BtrI	CACGTC	1 cut(s)	49
BtsCI	GGATG	2 cut(s)	57, 91
BtsIMutI	CAGTG	4 cut(s)	173, 376, 454, 626
BveI	ACCTGC	1 cut(s)	697
Cac8I	GCNNGC	3 cut(s)	348, 401, 736
CaiI	CAGNNNCTG	1 cut(s)	353
Cfr10I	RCCGGY	1 cut(s)	399
CseI	GACGC	2 cut(s)	179, 716
Csp6I	GTAC	2 cut(s)	323, 611
CviAII	CATG	5 cut(s)	161, 233, 588, 735, 760
CviQI	GTAC	2 cut(s)	323, 611
DdeI	CTNAG	3 cut(s)	189, 250, 411
DpnI	GATC	4 cut(s)	68, 297, 679, 684
DpnII	GATC	4 cut(s)	66, 295, 677, 682
DriI	GACNNNNNGTC	1 cut(s)	175
EaeI	YGGCCR	2 cut(s)	157, 666
Eam1105I	GACNNNNNGTC	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	61
Eco57I	CTGAAG	2 cut(s)	83, 465
EcoNI	CCTNNNNNAGG	1 cut(s)	210
EcoRII	CCWGG	2 cut(s)	663, 727
EcoT14I	CCWWGG	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	5 cut(s)	164, 236, 591, 738, 763
FaqI	GGGAC	1 cut(s)	594
FatI	CATG	5 cut(s)	160, 232, 587, 734, 759
FblI	GTMKAC	1 cut(s)	743
Fnu4HI	GCNGC	3 cut(s)	199, 202, 649
FokI	GGATG	2 cut(s)	44, 98
Fsp4HI	GCNGC	3 cut(s)	199, 202, 649
GluI	GCNGC	3 cut(s)	199, 202, 649
GsuI	CTGGAG	1 cut(s)	750
HaeIII	GGCC	2 cut(s)	159, 668
HapII	CCGG	1 cut(s)	400
HgaI	GACGC	2 cut(s)	179, 716
Hin1II	CATG	5 cut(s)	164, 236, 591, 738, 763
HindIII	AAGCTT	1 cut(s)	602
HinfI	GANTC	2 cut(s)	551, 724
HpaII	CCGG	1 cut(s)	400
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	3 cut(s)	424, 744, 779
Hpy188I	TCNGA	5 cut(s)	102, 148, 253, 412, 682
Hpy188III	TCNNGA	6 cut(s)	18, 79, 293, 425, 634, 713
Hpy8I	GTNNAC	3 cut(s)	424, 744, 779
HpyAV	CCTTC	5 cut(s)	76, 309, 387, 480, 534
HpyCH4III	ACNGT	7 cut(s)	35, 124, 144, 177, 440, 458, 585
HpyCH4IV	ACGT	2 cut(s)	48, 497
HpyCH4V	TGCA	7 cut(s)	46, 114, 240, 356, 570, 651, 812
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	3 cut(s)	189, 250, 411
HpySE526I	ACGT	2 cut(s)	48, 497
Hsp92II	CATG	5 cut(s)	164, 236, 591, 738, 763
KroI	GCCGGC	1 cut(s)	399
KroNI	GCCGGC	1 cut(s)	401
Kzo9I	GATC	4 cut(s)	66, 295, 677, 682
LmnI	GCTCC	2 cut(s)	715, 731
Lsp1109I	GCAGC	3 cut(s)	185, 188, 635
MaeII	ACGT	2 cut(s)	48, 497
MaeIII	GTNAC	2 cut(s)	167, 623
MalI	GATC	4 cut(s)	68, 297, 679, 684
MboI	GATC	4 cut(s)	66, 295, 677, 682
MboII	GAAGA	6 cut(s)	43, 46, 89, 144, 346, 471
MflI	RGATCY	2 cut(s)	66, 295
MlsI	TGGCCA	2 cut(s)	159, 668
MluCI	AATT	4 cut(s)	262, 406, 475, 490
MluNI	TGGCCA	2 cut(s)	159, 668
MmeI	TCCRAC	1 cut(s)	517
MnlI	CCTC	2 cut(s)	198, 789
Mox20I	TGGCCA	2 cut(s)	159, 668
MroNI	GCCGGC	1 cut(s)	399
MscI	TGGCCA	2 cut(s)	159, 668
MseI	TTAA	3 cut(s)	23, 525, 615
MslI	CAYNNNNRTG	2 cut(s)	165, 429
Msp20I	TGGCCA	2 cut(s)	159, 668
MspA1I	CMGCKG	1 cut(s)	485
MspI	CCGG	1 cut(s)	400
MspR9I	CCNGG	2 cut(s)	665, 729
MvaI	CCWGG	2 cut(s)	665, 729
MwoI	GCNNNNNNNGC	1 cut(s)	347
NaeI	GCCGGC	1 cut(s)	401
NdeII	GATC	4 cut(s)	66, 295, 677, 682
NgoMIV	GCCGGC	1 cut(s)	399
NlaIII	CATG	5 cut(s)	164, 236, 591, 738, 763
NlaIV	GGNNCC	1 cut(s)	398
NmeAIII	GCCGAG	1 cut(s)	50
NmuCI	GTSAC	2 cut(s)	167, 623
NspI	RCATGY	1 cut(s)	738
PaeI	GCATGC	1 cut(s)	738
PdiI	GCCGGC	1 cut(s)	401
PfeI	GAWTC	2 cut(s)	551, 724
PfoI	TCCNGGA	1 cut(s)	727
PkrI	GCNGC	3 cut(s)	200, 203, 650
PshBI	ATTAAT	1 cut(s)	525
Psp6I	CCWGG	2 cut(s)	663, 727
PspGI	CCWGG	2 cut(s)	663, 727
PspN4I	GGNNCC	1 cut(s)	398
PstI	CTGCAG	1 cut(s)	358
PstNI	CAGNNNCTG	1 cut(s)	353
PsuI	RGATCY	2 cut(s)	66, 295
PvuII	CAGCTG	1 cut(s)	485
RsaI	GTAC	2 cut(s)	324, 612
RsaNI	GTAC	2 cut(s)	323, 611
RseI	CAYNNNNRTG	2 cut(s)	165, 429
SaqAI	TTAA	3 cut(s)	23, 525, 615
SatI	GCNGC	3 cut(s)	199, 202, 649
Sau3AI	GATC	4 cut(s)	66, 295, 677, 682
ScaI	AGTACT	1 cut(s)	324
ScrFI	CCNGG	2 cut(s)	665, 729
SetI	ASST	9 cut(s)	51, 352, 398, 487, 500, 550, 606, 650, 691
SfcI	CTRYAG	1 cut(s)	354
SmiMI	CAYNNNNRTG	2 cut(s)	165, 429
SphI	GCATGC	1 cut(s)	738
Sse9I	AATT	4 cut(s)	262, 406, 475, 490
SspI	AATATT	1 cut(s)	365
StyD4I	CCNGG	2 cut(s)	663, 727
StyI	CCWWGG	1 cut(s)	61
TaaI	ACNGT	7 cut(s)	35, 124, 144, 177, 440, 458, 585
TaiI	ACGT	2 cut(s)	51, 500
TaqI	TCGA	1 cut(s)	702
TasI	AATT	4 cut(s)	262, 406, 475, 490
TatI	WGTACW	1 cut(s)	322
TfiI	GAWTC	2 cut(s)	551, 724
Tru1I	TTAA	3 cut(s)	23, 525, 615
Tru9I	TTAA	3 cut(s)	23, 525, 615
TscAI	CASTG	4 cut(s)	180, 376, 461, 626
TseFI	GTSAC	2 cut(s)	167, 623
TseI	GCWGC	3 cut(s)	198, 201, 648
Tsp45I	GTSAC	2 cut(s)	167, 623
TspDTI	ATGAA	1 cut(s)	46
TspRI	CASTG	4 cut(s)	180, 376, 461, 626
VspI	ATTAAT	1 cut(s)	525
XagI	CCTNNNNNAGG	1 cut(s)	210
XapI	RAATTY	1 cut(s)	475
XceI	RCATGY	1 cut(s)	738
XmiI	GTMKAC	1 cut(s)	743
ZrmI	AGTACT	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.