Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005830

Physical Location & Seq

Genomic Coordinates Forward (+)

36313300 .. 36319431

Gene Structure 6132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008753

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTCCATATCCCGATCAAGCCTCTACTGTTTGTTTCTGCACCTCTTCATCCTTGGGATCTCGGCTATCAGGAAGGATGTGGGCTTTCTTCAGAAGCAGTTTTGCAGAAGTACAGTCCAAGGAAGATACTTACTGTCTGATGATAATGGCCATGTCTGTGACGCGCTGTCAGTAAATCCTCAGTCTCGCTGCTGCCCGGAAAAAGGAGAGAAGTTCTCTTGTCATGGTTGCAACGTTGTCTCAGAGTGCTGTAATTCTTATGAGTACTGCGTTTCGTGTTGTCTAGATCCTTCAAGGATAATAAAGGAACAAGTACTGGAAGTGAAGATTGCAAAGCCAGCTTCTGCAGGGAAATATTCCAGTGTTTTTGATTTCTGTGCTGGAAGGTGCCGGCATAATTCTGAGAGTGTGGTTCACGAAAATGCTTACCGTAGTGATTTCCATCACTGTTTTTCTCTGCCTTCAAATTCTTCAGCTGCAAATTATACGTTTTTAGAAGCCAGACTGAATGGCATTAATGTTCTTGTTGGAAGGCAAGGTGAATCCTGCGACTTGGTTTGCAAGTCAAAGGGACAGTCATGTGTTCCAAATAAGCTTTTGGTACTTAATCAGTGTGACATTATCCAGAGATATATGAGCTGCAAGGGAACTTGCCTGGCCAGTATTGGATCAGATCAACCTGCCGAAGTTGTCGATGACGCTCCTGAACATTTGAATCCTGGAGCATGCTTGTATACCCAAACACAGTCCATGCTTTCTTGTTATGGTTCACATCAGCATACAAGGAGGCTTTGCCCTTGTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2054 Glyco_transf_18

Protein Analysis

269

Amino Acids

29.54

Weight (kDa)

7.72

Isoelectric Point (pI)

54.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPRING1	PF10218	31 - 151	1.1e-36	SREBP regulating gene protein
Glyco_transf_18	PF15024	170 - 267	3.4e-06	Glycosyltransferase family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59390 AT3G59390
fragaria_vesca	FvH4_4g10770 FvH4_4g10770 FvH4_4g10770 FvH4_4g10770
malus_domestica	MD04G1040100.v1.1
prunus_persica	Prupe.1G192800_v2.0.a1 Prupe.1G192800_v2.0.a1 Prupe.1G192800_v2.0.a1 Prupe.1G192800_v2.0.a1 Prupe.1G193700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0406391 RchiOBHm_Chr4g0406831
rosa_laevigata	RLG00000008753 RLG00000008755
rosa_multiflora	Rmu_sc0008087.1_g000003
rosa_roxburghii	Rroxscaffold_5G00351600
rosa_rugosa	Rorug04G0074200 Rorug04G0074300 Rorug04G0085000.1
rosa_samantha	Rh4AG141200 Rh4BG137600 Rh4CG147900 Rh4DG134900 Rh4DG135000
rosa_wichuraiana	Rw4G011470 Rw4G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	688
AccB1I	GGYRCC	1 cut(s)	387
AccI	GTMKAC	1 cut(s)	734
AccII	CGCG	1 cut(s)	164
AclI	AACGTT	1 cut(s)	234
AclWI	GGATC	3 cut(s)	65, 281, 676
AcoI	YGGCCR	2 cut(s)	148, 657
AcsI	RAATTY	1 cut(s)	466
AcuI	CTGAAG	2 cut(s)	74, 456
AfaI	GTAC	4 cut(s)	112, 266, 315, 603
AfiI	CCNNNNNNNGG	1 cut(s)	203
AgsI	TTSAA	3 cut(s)	294, 465, 715
AhdI	GACNNNNNGTC	1 cut(s)	166
AjnI	CCWGG	2 cut(s)	654, 718
AluBI	AGCT	4 cut(s)	341, 476, 595, 639
AluI	AGCT	4 cut(s)	341, 476, 595, 639
Alw26I	GTCTC	2 cut(s)	189, 244
AlwI	GGATC	3 cut(s)	65, 281, 676
AlwNI	CAGNNNCTG	1 cut(s)	344
AoxI	GGCC	2 cut(s)	148, 657
ApeKI	GCWGC	4 cut(s)	189, 192, 476, 639
ApoI	RAATTY	1 cut(s)	466
ArsI	GACNNNNNNTTYG	2 cut(s)	560, 592
AseI	ATTAAT	1 cut(s)	516
AspLEI	GCGC	1 cut(s)	166
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	551
BalI	TGGCCA	2 cut(s)	150, 659
BanI	GGYRCC	1 cut(s)	387
BbvI	GCAGC	4 cut(s)	176, 179, 463, 626
BccI	CCATC	1 cut(s)	450
BciT130I	CCWGG	2 cut(s)	656, 720
BcnI	CCSGG	1 cut(s)	197
BcoDI	GTCTC	2 cut(s)	189, 244
BfaI	CTAG	1 cut(s)	284
BfmI	CTRYAG	1 cut(s)	345
BfuAI	ACCTGC	1 cut(s)	688
BisI	GCNGC	4 cut(s)	190, 193, 477, 640
BlsI	GCNGC	4 cut(s)	191, 194, 478, 641
BmcAI	AGTACT	2 cut(s)	266, 315
Bme1390I	CCNGG	3 cut(s)	197, 656, 720
BmeRI	GACNNNNNGTC	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	389
BmrFI	CCNGG	3 cut(s)	197, 656, 720
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
BpmI	CTGGAG	1 cut(s)	741
BpuMI	CCSGG	1 cut(s)	197
BsaBI	GATNNNNATC	1 cut(s)	441
BsaJI	CCNNGG	2 cut(s)	52, 118
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse118I	RCCGGY	1 cut(s)	390
Bse1I	ACTGG	3 cut(s)	321, 360, 660
Bse8I	GATNNNNATC	1 cut(s)	441
BseBI	CCWGG	2 cut(s)	656, 720
BseDI	CCNNGG	2 cut(s)	52, 118
BseGI	GGATG	2 cut(s)	48, 82
BseJI	GATNNNNATC	1 cut(s)	441
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMII	CTCAG	3 cut(s)	194, 255, 393
BseNI	ACTGG	3 cut(s)	321, 360, 660
BseXI	GCAGC	4 cut(s)	176, 179, 463, 626
BsgI	GTGCAG	1 cut(s)	23
Bsh1236I	CGCG	1 cut(s)	164
BshFI	GGCC	2 cut(s)	150, 659
BshNI	GGYRCC	1 cut(s)	387
BsiSI	CCGG	2 cut(s)	197, 391
BslFI	GGGAC	1 cut(s)	585
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmAI	GTCTC	2 cut(s)	189, 244
BsmFI	GGGAC	1 cut(s)	585
BsnI	GGCC	2 cut(s)	150, 659
Bsp143I	GATC	5 cut(s)	14, 57, 286, 668, 673
BspANI	GGCC	2 cut(s)	150, 659
BspCNI	CTCAG	3 cut(s)	193, 254, 394
BspFNI	CGCG	1 cut(s)	164
BspLI	GGNNCC	1 cut(s)	389
BspMAI	CTGCAG	1 cut(s)	349
BspMI	ACCTGC	1 cut(s)	688
BspPI	GGATC	3 cut(s)	65, 281, 676
BspT107I	GGYRCC	1 cut(s)	387
BsrFI	RCCGGY	1 cut(s)	390
BsrI	ACTGG	3 cut(s)	321, 360, 660
BssAI	RCCGGY	1 cut(s)	390
BssECI	CCNNGG	2 cut(s)	52, 118
BssMI	GATC	5 cut(s)	14, 57, 286, 668, 673
BssNAI	GTATAC	1 cut(s)	735
BssT1I	CCWWGG	2 cut(s)	52, 118
Bst1107I	GTATAC	1 cut(s)	735
Bst2UI	CCWGG	2 cut(s)	656, 720
Bst4CI	ACNGT	7 cut(s)	29, 115, 135, 431, 449, 576, 747
Bst6I	CTCTTC	1 cut(s)	50
BstC8I	GCNNGC	3 cut(s)	339, 392, 727
BstDEI	CTNAG	3 cut(s)	180, 241, 402
BstF5I	GGATG	2 cut(s)	48, 82
BstFNI	CGCG	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	5 cut(s)	17, 60, 289, 671, 676
BstMAI	GTCTC	2 cut(s)	189, 244
BstMBI	GATC	5 cut(s)	14, 57, 286, 668, 673
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstNI	CCWGG	2 cut(s)	656, 720
BstNSI	RCATGY	1 cut(s)	729
BstSCI	CCNGG	3 cut(s)	195, 654, 718
BstSFI	CTRYAG	1 cut(s)	345
BstUI	CGCG	1 cut(s)	164
BstV1I	GCAGC	4 cut(s)	176, 179, 463, 626
BstX2I	RGATCY	2 cut(s)	57, 286
BstYI	RGATCY	2 cut(s)	57, 286
BstZ17I	GTATAC	1 cut(s)	735
BsuRI	GGCC	2 cut(s)	150, 659
BtsCI	GGATG	2 cut(s)	48, 82
BtsIMutI	CAGTG	3 cut(s)	367, 445, 617
BveI	ACCTGC	1 cut(s)	688
Cac8I	GCNNGC	3 cut(s)	339, 392, 727
CaiI	CAGNNNCTG	1 cut(s)	344
CfoI	GCGC	1 cut(s)	166
Cfr10I	RCCGGY	1 cut(s)	390
CseI	GACGC	2 cut(s)	170, 707
Csp6I	GTAC	4 cut(s)	111, 265, 314, 602
CviAII	CATG	5 cut(s)	152, 224, 579, 726, 751
CviQI	GTAC	4 cut(s)	111, 265, 314, 602
DdeI	CTNAG	3 cut(s)	180, 241, 402
DpnI	GATC	5 cut(s)	16, 59, 288, 670, 675
DpnII	GATC	5 cut(s)	14, 57, 286, 668, 673
DriI	GACNNNNNGTC	1 cut(s)	166
EaeI	YGGCCR	2 cut(s)	148, 657
Eam1104I	CTCTTC	1 cut(s)	50
Eam1105I	GACNNNNNGTC	1 cut(s)	166
EarI	CTCTTC	1 cut(s)	50
Eco130I	CCWWGG	2 cut(s)	52, 118
Eco57I	CTGAAG	2 cut(s)	74, 456
EcoRII	CCWGG	2 cut(s)	654, 718
EcoT14I	CCWWGG	2 cut(s)	52, 118
ErhI	CCWWGG	2 cut(s)	52, 118
FaeI	CATG	5 cut(s)	155, 227, 582, 729, 754
FaqI	GGGAC	1 cut(s)	585
FatI	CATG	5 cut(s)	151, 223, 578, 725, 750
FblI	GTMKAC	1 cut(s)	734
Fnu4HI	GCNGC	4 cut(s)	190, 193, 477, 640
FokI	GGATG	2 cut(s)	35, 89
Fsp4HI	GCNGC	4 cut(s)	190, 193, 477, 640
FspBI	CTAG	1 cut(s)	284
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	4 cut(s)	190, 193, 477, 640
GsuI	CTGGAG	1 cut(s)	741
HaeIII	GGCC	2 cut(s)	150, 659
HapII	CCGG	2 cut(s)	197, 391
HgaI	GACGC	2 cut(s)	170, 707
HhaI	GCGC	1 cut(s)	166
Hin1II	CATG	5 cut(s)	155, 227, 582, 729, 754
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HindIII	AAGCTT	1 cut(s)	593
HinfI	GANTC	2 cut(s)	542, 715
HpaII	CCGG	2 cut(s)	197, 391
HphI	GGTGA	1 cut(s)	551
Hpy166II	GTNNAC	3 cut(s)	415, 735, 770
Hpy188I	TCNGA	5 cut(s)	93, 139, 244, 403, 673
Hpy188III	TCNNGA	6 cut(s)	12, 70, 284, 416, 625, 704
Hpy8I	GTNNAC	3 cut(s)	415, 735, 770
HpyAV	CCTTC	5 cut(s)	67, 300, 378, 471, 525
HpyCH4III	ACNGT	7 cut(s)	29, 115, 135, 431, 449, 576, 747
HpyCH4IV	ACGT	2 cut(s)	234, 488
HpyCH4V	TGCA	9 cut(s)	40, 105, 231, 332, 347, 479, 561, 642, 803
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	3 cut(s)	180, 241, 402
HpySE526I	ACGT	2 cut(s)	234, 488
Hsp92II	CATG	5 cut(s)	155, 227, 582, 729, 754
HspAI	GCGC	1 cut(s)	164
KroI	GCCGGC	1 cut(s)	390
KroNI	GCCGGC	1 cut(s)	392
Kzo9I	GATC	5 cut(s)	14, 57, 286, 668, 673
LmnI	GCTCC	2 cut(s)	706, 722
Lsp1109I	GCAGC	4 cut(s)	176, 179, 463, 626
MaeI	CTAG	1 cut(s)	284
MaeII	ACGT	2 cut(s)	234, 488
MaeIII	GTNAC	2 cut(s)	158, 614
MalI	GATC	5 cut(s)	16, 59, 288, 670, 675
MboI	GATC	5 cut(s)	14, 57, 286, 668, 673
MboII	GAAGA	5 cut(s)	37, 80, 135, 337, 462
MflI	RGATCY	2 cut(s)	57, 286
MlsI	TGGCCA	2 cut(s)	150, 659
MluCI	AATT	4 cut(s)	253, 397, 466, 481
MluNI	TGGCCA	2 cut(s)	150, 659
MmeI	TCCRAC	1 cut(s)	508
MnlI	CCTC	4 cut(s)	32, 53, 189, 780
Mox20I	TGGCCA	2 cut(s)	150, 659
MroNI	GCCGGC	1 cut(s)	390
MscI	TGGCCA	2 cut(s)	150, 659
MseI	TTAA	2 cut(s)	516, 606
MslI	CAYNNNNRTG	2 cut(s)	156, 420
Msp20I	TGGCCA	2 cut(s)	150, 659
MspA1I	CMGCKG	1 cut(s)	476
MspI	CCGG	2 cut(s)	197, 391
MspR9I	CCNGG	3 cut(s)	197, 656, 720
MvaI	CCWGG	2 cut(s)	656, 720
MvnI	CGCG	1 cut(s)	164
MwoI	GCNNNNNNNGC	1 cut(s)	338
NaeI	GCCGGC	1 cut(s)	392
NciI	CCSGG	1 cut(s)	197
NdeII	GATC	5 cut(s)	14, 57, 286, 668, 673
NgoMIV	GCCGGC	1 cut(s)	390
NlaIII	CATG	5 cut(s)	155, 227, 582, 729, 754
NlaIV	GGNNCC	1 cut(s)	389
NmeAIII	GCCGAG	1 cut(s)	41
NmuCI	GTSAC	2 cut(s)	158, 614
NspI	RCATGY	1 cut(s)	729
PaeI	GCATGC	1 cut(s)	729
PdiI	GCCGGC	1 cut(s)	392
PfeI	GAWTC	2 cut(s)	542, 715
PfoI	TCCNGGA	1 cut(s)	718
PkrI	GCNGC	4 cut(s)	191, 194, 478, 641
PshBI	ATTAAT	1 cut(s)	516
Psp1406I	AACGTT	1 cut(s)	234
Psp6I	CCWGG	2 cut(s)	654, 718
PspGI	CCWGG	2 cut(s)	654, 718
PspN4I	GGNNCC	1 cut(s)	389
PstI	CTGCAG	1 cut(s)	349
PstNI	CAGNNNCTG	1 cut(s)	344
PsuI	RGATCY	2 cut(s)	57, 286
PvuII	CAGCTG	1 cut(s)	476
RsaI	GTAC	4 cut(s)	112, 266, 315, 603
RsaNI	GTAC	4 cut(s)	111, 265, 314, 602
RseI	CAYNNNNRTG	2 cut(s)	156, 420
SaqAI	TTAA	2 cut(s)	516, 606
SatI	GCNGC	4 cut(s)	190, 193, 477, 640
Sau3AI	GATC	5 cut(s)	14, 57, 286, 668, 673
ScaI	AGTACT	2 cut(s)	266, 315
ScrFI	CCNGG	3 cut(s)	197, 656, 720
SfcI	CTRYAG	1 cut(s)	345
SmiMI	CAYNNNNRTG	2 cut(s)	156, 420
SphI	GCATGC	1 cut(s)	729
Sse9I	AATT	4 cut(s)	253, 397, 466, 481
SspI	AATATT	1 cut(s)	356
SspMI	CTAG	1 cut(s)	284
StyD4I	CCNGG	3 cut(s)	195, 654, 718
StyI	CCWWGG	2 cut(s)	52, 118
TaaI	ACNGT	7 cut(s)	29, 115, 135, 431, 449, 576, 747
TaiI	ACGT	2 cut(s)	237, 491
TaqI	TCGA	1 cut(s)	693
TasI	AATT	4 cut(s)	253, 397, 466, 481
TatI	WGTACW	3 cut(s)	110, 264, 313
TfiI	GAWTC	2 cut(s)	542, 715
Tru1I	TTAA	2 cut(s)	516, 606
Tru9I	TTAA	2 cut(s)	516, 606
TscAI	CASTG	3 cut(s)	367, 452, 617
TseFI	GTSAC	2 cut(s)	158, 614
TseI	GCWGC	4 cut(s)	189, 192, 476, 639
Tsp45I	GTSAC	2 cut(s)	158, 614
TspDTI	ATGAA	1 cut(s)	37
TspRI	CASTG	3 cut(s)	367, 452, 617
VspI	ATTAAT	1 cut(s)	516
XapI	RAATTY	1 cut(s)	466
XbaI	TCTAGA	1 cut(s)	283
XceI	RCATGY	1 cut(s)	729
XmiI	GTMKAC	1 cut(s)	734
XspI	CTAG	1 cut(s)	284
ZrmI	AGTACT	2 cut(s)	266, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.