RLG00000008755

Uncharacterized conserved protein (DUF2054)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0005830
Physical Location & Seq
Forward (+)
36366097 .. 36373269
7173 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008755

Sequence Viewer

Length: 768 bp
ATGCCCACATCCCGATTAAGCCTATACTGTTTGTTTCTGCACCTCTTCATCCTTGGGATCTCGGCTATCAGGAAGGATGTGGGCTTTCTTCAGAAGCAGTTTTGCAGAAATACAGTCCAAGGAAGATACTTGCTGTCTGATGATAATGGCCATGTCTGTGACGCGCTGTCAGTAAATCCTCAGTCTCGCTGCTGCCCTGAAAAAGGAGACAAGTTCTCTTGTCATGGTTGCAACGTTGTCTCAGAGTGCTGTAATTCTTATGAGTATTGCGTTTCGTGCTGTGTAGATCCTTCAAGGATAATAAAGGAACAAGTACTGGAAGTGAAGATTGCCAAGCCAGCTTCTGCAGGGAAATATTCCAGTGTTTTTGATTTCTGTGCTGGAAGGTGCCGGCATAATTCTGAGAGTGTGGTTCACGAAAATGCTTACCGTAGTGATTTCCATCACTGTTTTTCTCTGCCTTCAAATTCTTCAGCTGCGAATTATACGTTTTTAGAAGCCAGACTGAATGGCATTAATGTTCTTGTTGGAAGGCAAGGTGAATCCTGCGACTTGGTTTGCAAGTCAAAGGGACAGTCATGTGTTCCAAATAAGCTTTTGGTACTTAATCAGTGTGACATTATCCAGAGATATATGAGCTGCAAGGGAACTTGCCTGGCCAGTATTGGATCAGATCAACCTGCCGAAGTTGTTGATGATGCTCCTGAATATTTGAATCCTGGAGCATGCTTATCATTATCAGAATTTCCACCGACGTCCCAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2054 Glyco_transf_18

Protein Analysis

256

Amino Acids

27.98

Weight (kDa)

6.63

Isoelectric Point (pI)

49.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPRING1 PF10218 31 - 151 1.2e-36 SREBP regulating gene protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 758
Acc36I ACCTGC 1 cut(s) 688
AccB1I GGYRCC 1 cut(s) 387
AccII CGCG 1 cut(s) 164
AclI AACGTT 1 cut(s) 234
AclWI GGATC 3 cut(s) 65, 281, 676
AcoI YGGCCR 2 cut(s) 148, 657
AcsI RAATTY 2 cut(s) 466, 743
AcuI CTGAAG 2 cut(s) 74, 456
AcyI GRCGYC 1 cut(s) 755
AfaI GTAC 2 cut(s) 315, 603
AfiI CCNNNNNNNGG 1 cut(s) 203
AgsI TTSAA 3 cut(s) 294, 465, 715
AhdI GACNNNNNGTC 1 cut(s) 166
AjnI CCWGG 3 cut(s) 654, 718, 759
AluBI AGCT 4 cut(s) 341, 476, 595, 639
AluI AGCT 4 cut(s) 341, 476, 595, 639
Alw26I GTCTC 3 cut(s) 189, 201, 244
AlwI GGATC 3 cut(s) 65, 281, 676
AlwNI CAGNNNCTG 1 cut(s) 344
AoxI GGCC 2 cut(s) 148, 657
ApeKI GCWGC 4 cut(s) 189, 192, 476, 639
ApoI RAATTY 2 cut(s) 466, 743
ArsI GACNNNNNNTTYG 2 cut(s) 560, 592
AseI ATTAAT 1 cut(s) 516
AspLEI GCGC 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 551
BalI TGGCCA 2 cut(s) 150, 659
BanI GGYRCC 1 cut(s) 387
BbvI GCAGC 4 cut(s) 176, 179, 463, 626
BccI CCATC 1 cut(s) 450
BciT130I CCWGG 3 cut(s) 656, 720, 761
BcoDI GTCTC 3 cut(s) 189, 201, 244
BfmI CTRYAG 1 cut(s) 345
BfuAI ACCTGC 1 cut(s) 688
BisI GCNGC 4 cut(s) 190, 193, 477, 640
BlsI GCNGC 4 cut(s) 191, 194, 478, 641
BmcAI AGTACT 1 cut(s) 315
Bme1390I CCNGG 3 cut(s) 656, 720, 761
BmeRI GACNNNNNGTC 1 cut(s) 166
BmiI GGNNCC 1 cut(s) 389
BmrFI CCNGG 3 cut(s) 656, 720, 761
BmsI GCATC 1 cut(s) 688
BpmI CTGGAG 1 cut(s) 741
BsaBI GATNNNNATC 1 cut(s) 441
BsaHI GRCGYC 1 cut(s) 755
BsaJI CCNNGG 3 cut(s) 52, 118, 759
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse118I RCCGGY 1 cut(s) 390
Bse1I ACTGG 3 cut(s) 321, 360, 660
Bse8I GATNNNNATC 1 cut(s) 441
BseBI CCWGG 3 cut(s) 656, 720, 761
BseDI CCNNGG 3 cut(s) 52, 118, 759
BseGI GGATG 3 cut(s) 8, 48, 82
BseJI GATNNNNATC 1 cut(s) 441
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMII CTCAG 3 cut(s) 194, 255, 393
BseNI ACTGG 3 cut(s) 321, 360, 660
BseXI GCAGC 4 cut(s) 176, 179, 463, 626
BsgI GTGCAG 1 cut(s) 23
Bsh1236I CGCG 1 cut(s) 164
BshFI GGCC 2 cut(s) 150, 659
BshNI GGYRCC 1 cut(s) 387
BsiSI CCGG 1 cut(s) 391
BslFI GGGAC 2 cut(s) 585, 742
BslI CCNNNNNNNGG 1 cut(s) 203
BsmAI GTCTC 3 cut(s) 189, 201, 244
BsmFI GGGAC 2 cut(s) 585, 742
BsnI GGCC 2 cut(s) 150, 659
Bsp143I GATC 4 cut(s) 57, 286, 668, 673
BspANI GGCC 2 cut(s) 150, 659
BspCNI CTCAG 3 cut(s) 193, 254, 394
BspFNI CGCG 1 cut(s) 164
BspLI GGNNCC 1 cut(s) 389
BspMAI CTGCAG 1 cut(s) 349
BspMI ACCTGC 1 cut(s) 688
BspPI GGATC 3 cut(s) 65, 281, 676
BspT107I GGYRCC 1 cut(s) 387
BsrFI RCCGGY 1 cut(s) 390
BsrI ACTGG 3 cut(s) 321, 360, 660
BssAI RCCGGY 1 cut(s) 390
BssECI CCNNGG 3 cut(s) 52, 118, 759
BssMI GATC 4 cut(s) 57, 286, 668, 673
BssNI GRCGYC 1 cut(s) 755
BssT1I CCWWGG 2 cut(s) 52, 118
Bst2UI CCWGG 3 cut(s) 656, 720, 761
Bst4CI ACNGT 5 cut(s) 29, 115, 431, 449, 576
Bst6I CTCTTC 1 cut(s) 50
BstACI GRCGYC 1 cut(s) 755
BstC8I GCNNGC 3 cut(s) 339, 392, 727
BstDEI CTNAG 3 cut(s) 180, 241, 402
BstENI CCTNNNNNAGG 1 cut(s) 201
BstF5I GGATG 3 cut(s) 8, 48, 82
BstFNI CGCG 1 cut(s) 164
BstHHI GCGC 1 cut(s) 166
BstKTI GATC 4 cut(s) 60, 289, 671, 676
BstMAI GTCTC 3 cut(s) 189, 201, 244
BstMBI GATC 4 cut(s) 57, 286, 668, 673
BstMWI GCNNNNNNNGC 2 cut(s) 276, 338
BstNI CCWGG 3 cut(s) 656, 720, 761
BstNSI RCATGY 1 cut(s) 729
BstSCI CCNGG 3 cut(s) 654, 718, 759
BstSFI CTRYAG 1 cut(s) 345
BstUI CGCG 1 cut(s) 164
BstV1I GCAGC 4 cut(s) 176, 179, 463, 626
BstX2I RGATCY 2 cut(s) 57, 286
BstYI RGATCY 2 cut(s) 57, 286
BsuRI GGCC 2 cut(s) 150, 659
BtsCI GGATG 3 cut(s) 8, 48, 82
BtsIMutI CAGTG 3 cut(s) 367, 445, 617
BveI ACCTGC 1 cut(s) 688
Cac8I GCNNGC 3 cut(s) 339, 392, 727
CaiI CAGNNNCTG 1 cut(s) 344
CfoI GCGC 1 cut(s) 166
Cfr10I RCCGGY 1 cut(s) 390
CseI GACGC 1 cut(s) 170
Csp6I GTAC 2 cut(s) 314, 602
CviAII CATG 5 cut(s) 152, 224, 579, 726, 765
CviQI GTAC 2 cut(s) 314, 602
DdeI CTNAG 3 cut(s) 180, 241, 402
DpnI GATC 4 cut(s) 59, 288, 670, 675
DpnII GATC 4 cut(s) 57, 286, 668, 673
DriI GACNNNNNGTC 1 cut(s) 166
EaeI YGGCCR 2 cut(s) 148, 657
Eam1104I CTCTTC 1 cut(s) 50
Eam1105I GACNNNNNGTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 50
Eco130I CCWWGG 2 cut(s) 52, 118
Eco57I CTGAAG 2 cut(s) 74, 456
EcoNI CCTNNNNNAGG 1 cut(s) 201
EcoRII CCWGG 3 cut(s) 654, 718, 759
EcoT14I CCWWGG 2 cut(s) 52, 118
ErhI CCWWGG 2 cut(s) 52, 118
FaeI CATG 5 cut(s) 155, 227, 582, 729, 768
FaqI GGGAC 2 cut(s) 585, 742
FatI CATG 5 cut(s) 151, 223, 578, 725, 764
Fnu4HI GCNGC 4 cut(s) 190, 193, 477, 640
FokI GGATG 2 cut(s) 35, 89
Fsp4HI GCNGC 4 cut(s) 190, 193, 477, 640
GlaI GCGC 1 cut(s) 165
GluI GCNGC 4 cut(s) 190, 193, 477, 640
GsuI CTGGAG 1 cut(s) 741
HaeIII GGCC 2 cut(s) 150, 659
HapII CCGG 1 cut(s) 391
HgaI GACGC 1 cut(s) 170
HhaI GCGC 1 cut(s) 166
Hin1I GRCGYC 1 cut(s) 755
Hin1II CATG 5 cut(s) 155, 227, 582, 729, 768
Hin6I GCGC 1 cut(s) 164
HinP1I GCGC 1 cut(s) 164
HindIII AAGCTT 1 cut(s) 593
HinfI GANTC 2 cut(s) 542, 715
HpaII CCGG 1 cut(s) 391
HphI GGTGA 1 cut(s) 551
Hpy166II GTNNAC 1 cut(s) 415
Hpy188I TCNGA 6 cut(s) 93, 139, 244, 403, 673, 742
Hpy188III TCNNGA 5 cut(s) 12, 70, 416, 625, 704
Hpy8I GTNNAC 1 cut(s) 415
Hpy99I CGWCG 1 cut(s) 757
HpyAV CCTTC 5 cut(s) 67, 300, 378, 471, 525
HpyCH4III ACNGT 5 cut(s) 29, 115, 431, 449, 576
HpyCH4IV ACGT 3 cut(s) 234, 488, 755
HpyCH4V TGCA 6 cut(s) 40, 105, 231, 347, 561, 642
HpyF10VI GCNNNNNNNGC 2 cut(s) 276, 338
HpyF3I CTNAG 3 cut(s) 180, 241, 402
HpySE526I ACGT 3 cut(s) 234, 488, 755
Hsp92I GRCGYC 1 cut(s) 755
Hsp92II CATG 5 cut(s) 155, 227, 582, 729, 768
HspAI GCGC 1 cut(s) 164
KroI GCCGGC 1 cut(s) 390
KroNI GCCGGC 1 cut(s) 392
Kzo9I GATC 4 cut(s) 57, 286, 668, 673
LmnI GCTCC 2 cut(s) 706, 722
Lsp1109I GCAGC 4 cut(s) 176, 179, 463, 626
LweI GCATC 1 cut(s) 688
MaeII ACGT 3 cut(s) 234, 488, 755
MaeIII GTNAC 2 cut(s) 158, 614
MalI GATC 4 cut(s) 59, 288, 670, 675
MboI GATC 4 cut(s) 57, 286, 668, 673
MboII GAAGA 5 cut(s) 37, 80, 135, 337, 462
MflI RGATCY 2 cut(s) 57, 286
MlsI TGGCCA 2 cut(s) 150, 659
MluCI AATT 5 cut(s) 253, 397, 466, 481, 743
MluNI TGGCCA 2 cut(s) 150, 659
MmeI TCCRAC 1 cut(s) 508
MnlI CCTC 2 cut(s) 53, 189
Mox20I TGGCCA 2 cut(s) 150, 659
MroNI GCCGGC 1 cut(s) 390
MscI TGGCCA 2 cut(s) 150, 659
MseI TTAA 3 cut(s) 17, 516, 606
MslI CAYNNNNRTG 2 cut(s) 156, 420
Msp20I TGGCCA 2 cut(s) 150, 659
MspA1I CMGCKG 1 cut(s) 476
MspI CCGG 1 cut(s) 391
MspR9I CCNGG 3 cut(s) 656, 720, 761
MvaI CCWGG 3 cut(s) 656, 720, 761
MvnI CGCG 1 cut(s) 164
MwoI GCNNNNNNNGC 2 cut(s) 276, 338
NaeI GCCGGC 1 cut(s) 392
NdeII GATC 4 cut(s) 57, 286, 668, 673
NgoMIV GCCGGC 1 cut(s) 390
NlaIII CATG 5 cut(s) 155, 227, 582, 729, 768
NlaIV GGNNCC 1 cut(s) 389
NmeAIII GCCGAG 1 cut(s) 41
NmuCI GTSAC 2 cut(s) 158, 614
NspI RCATGY 1 cut(s) 729
PaeI GCATGC 1 cut(s) 729
PdiI GCCGGC 1 cut(s) 392
PfeI GAWTC 2 cut(s) 542, 715
PfoI TCCNGGA 1 cut(s) 718
PkrI GCNGC 4 cut(s) 191, 194, 478, 641
PshBI ATTAAT 1 cut(s) 516
Psp1406I AACGTT 1 cut(s) 234
Psp6I CCWGG 3 cut(s) 654, 718, 759
PspGI CCWGG 3 cut(s) 654, 718, 759
PspN4I GGNNCC 1 cut(s) 389
PstI CTGCAG 1 cut(s) 349
PstNI CAGNNNCTG 1 cut(s) 344
PsuI RGATCY 2 cut(s) 57, 286
PvuII CAGCTG 1 cut(s) 476
RsaI GTAC 2 cut(s) 315, 603
RsaNI GTAC 2 cut(s) 314, 602
RseI CAYNNNNRTG 2 cut(s) 156, 420
SaqAI TTAA 3 cut(s) 17, 516, 606
SatI GCNGC 4 cut(s) 190, 193, 477, 640
Sau3AI GATC 4 cut(s) 57, 286, 668, 673
ScaI AGTACT 1 cut(s) 315
ScrFI CCNGG 3 cut(s) 656, 720, 761
SfaNI GCATC 1 cut(s) 688
SfcI CTRYAG 1 cut(s) 345
SmiMI CAYNNNNRTG 2 cut(s) 156, 420
SphI GCATGC 1 cut(s) 729
Sse9I AATT 5 cut(s) 253, 397, 466, 481, 743
SspI AATATT 2 cut(s) 356, 710
StyD4I CCNGG 3 cut(s) 654, 718, 759
StyI CCWWGG 2 cut(s) 52, 118
TaaI ACNGT 5 cut(s) 29, 115, 431, 449, 576
TaiI ACGT 3 cut(s) 237, 491, 758
TasI AATT 5 cut(s) 253, 397, 466, 481, 743
TatI WGTACW 1 cut(s) 313
TfiI GAWTC 2 cut(s) 542, 715
Tru1I TTAA 3 cut(s) 17, 516, 606
Tru9I TTAA 3 cut(s) 17, 516, 606
TscAI CASTG 3 cut(s) 367, 452, 617
TseFI GTSAC 2 cut(s) 158, 614
TseI GCWGC 4 cut(s) 189, 192, 476, 639
Tsp45I GTSAC 2 cut(s) 158, 614
TspDTI ATGAA 1 cut(s) 37
TspRI CASTG 3 cut(s) 367, 452, 617
VspI ATTAAT 1 cut(s) 516
XagI CCTNNNNNAGG 1 cut(s) 201
XapI RAATTY 2 cut(s) 466, 743
XceI RCATGY 1 cut(s) 729
ZraI GACGTC 1 cut(s) 756
ZrmI AGTACT 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.