Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0005830

Physical Location & Seq

Genomic Coordinates Reverse (-)

26894716 .. 26902635

Gene Structure 7920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG135000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAGAATGTCCATATCCCGATTAAGCCTGTACTGTTTGTTTCTGCACGTCTTCATCCTTGGGATCTCGGCTATCAGGAAGGATGTGGGCTTTCTTCAGAAGCAGTTTTGCAGAAATACAGTCCAAGGAAGATACTTACTGTCTGATGATAATGGCCGTGTAGGCCGTGTCTGTGACGCACTGTCAGTAAATCCTCAGTCTCGCTGCTGCCCTGAAAAAGGAGACAAGTTTTCTTGTCATGGTTGCAATGTTGTCTCAGAGTGCTGTAATTCTTATGAGTATTGCGTTTCGTGTTGTCAAGATCCTTCAAGGATAATAAAGGAACAAGTACTGGAAGTGAAGATTTCCAAGCCAGCTTCTGCAGGGAAATATTCCAGTGTTTTTGATTTCTGTGCTGGAAGGTGCTGGCATAATTCTGAGAGTGTGGTTCACGAAAATGCTTACCGTAGTGATTTCCATCACTGTTTTTCTCTGCCTTCAAATTCTTCAGCTGTGAATTATACGTTTTTAGAAGCCAGACTGAATGGCATTAATGTTCTTGTTGGAAGGCAAGGTGAATCCTGCGACTTGGTTTGCAAGTCAAAGGGACAGTCATGTGTTCCAAATAAGCTTTTGGTGCTTAATCAGTGTGACATTATCCAGAGATATATGAGCTGCAAGGGAACTTGCCTGGCCAGTATTGGATCAGATCAACCTGCTGAAGTTGTCGATGACGCTCCTGAACATTTGAATCCTGGAGCATGCTTGTATACCCAAACACAATCCATGCTTTCTTGTTATGGTTCACATCAGCATACAAGGAGGCTTTGCCCTTGTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2054 Glyco_transf_18

Protein Analysis

273

Amino Acids

30.28

Weight (kDa)

8.11

Isoelectric Point (pI)

49.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPRING1	PF10218	33 - 156	7.9e-33	SREBP regulating gene protein
Glyco_transf_18	PF15024	175 - 272	2.8e-06	Glycosyltransferase family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59390 AT3G59390
fragaria_vesca	FvH4_4g10770 FvH4_4g10770 FvH4_4g10770 FvH4_4g10770
malus_domestica	MD04G1040100.v1.1
prunus_persica	Prupe.1G192800_v2.0.a1 Prupe.1G192800_v2.0.a1 Prupe.1G192800_v2.0.a1 Prupe.1G192800_v2.0.a1 Prupe.1G193700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0406391 RchiOBHm_Chr4g0406831
rosa_laevigata	RLG00000008753 RLG00000008755
rosa_multiflora	Rmu_sc0008087.1_g000003
rosa_roxburghii	Rroxscaffold_5G00351600
rosa_rugosa	Rorug04G0074200 Rorug04G0074300 Rorug04G0085000.1
rosa_samantha	Rh4AG141200 Rh4BG137600 Rh4CG147900 Rh4DG134900 Rh4DG135000
rosa_wichuraiana	Rw4G011470 Rw4G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	703
AccI	GTMKAC	1 cut(s)	749
AclWI	GGATC	3 cut(s)	71, 296, 691
AcoI	YGGCCR	2 cut(s)	154, 672
AcsI	RAATTY	1 cut(s)	481
AcuI	CTGAAG	3 cut(s)	80, 471, 720
AfaI	GTAC	2 cut(s)	32, 330
AfiI	CCNNNNNNNGG	1 cut(s)	218
AgsI	TTSAA	3 cut(s)	309, 480, 730
AhdI	GACNNNNNGTC	1 cut(s)	181
AjiI	CACGTC	1 cut(s)	49
AjnI	CCWGG	2 cut(s)	669, 733
AluBI	AGCT	4 cut(s)	356, 491, 610, 654
AluI	AGCT	4 cut(s)	356, 491, 610, 654
Alw26I	GTCTC	3 cut(s)	204, 216, 259
AlwI	GGATC	3 cut(s)	71, 296, 691
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	3 cut(s)	154, 163, 672
ApeKI	GCWGC	3 cut(s)	204, 207, 654
ApoI	RAATTY	1 cut(s)	481
ArsI	GACNNNNNNTTYG	2 cut(s)	575, 607
AseI	ATTAAT	1 cut(s)	531
AsuHPI	GGTGA	1 cut(s)	566
BalI	TGGCCA	1 cut(s)	674
BbsI	GAAGAC	1 cut(s)	43
BbvI	GCAGC	3 cut(s)	191, 194, 641
BccI	CCATC	1 cut(s)	465
BceAI	ACGGC	2 cut(s)	141, 150
BciT130I	CCWGG	2 cut(s)	671, 735
BcoDI	GTCTC	3 cut(s)	204, 216, 259
BfmI	CTRYAG	1 cut(s)	360
BfuAI	ACCTGC	1 cut(s)	703
BglI	GCCNNNNNGGC	1 cut(s)	162
BisI	GCNGC	3 cut(s)	205, 208, 655
BlsI	GCNGC	3 cut(s)	206, 209, 656
BmcAI	AGTACT	1 cut(s)	330
Bme1390I	CCNGG	2 cut(s)	671, 735
BmeRI	GACNNNNNGTC	1 cut(s)	181
BmgBI	CACGTC	1 cut(s)	49
BmrFI	CCNGG	2 cut(s)	671, 735
BpiI	GAAGAC	1 cut(s)	43
BpmI	CTGGAG	1 cut(s)	756
BsaBI	GATNNNNATC	1 cut(s)	456
BsaJI	CCNNGG	2 cut(s)	58, 124
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse1I	ACTGG	3 cut(s)	336, 375, 675
Bse3DI	GCAATG	1 cut(s)	253
Bse8I	GATNNNNATC	1 cut(s)	456
BseBI	CCWGG	2 cut(s)	671, 735
BseDI	CCNNGG	2 cut(s)	58, 124
BseGI	GGATG	2 cut(s)	54, 88
BseJI	GATNNNNATC	1 cut(s)	456
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseMI	GCAATG	1 cut(s)	253
BseMII	CTCAG	3 cut(s)	209, 270, 408
BseNI	ACTGG	3 cut(s)	336, 375, 675
BseXI	GCAGC	3 cut(s)	191, 194, 641
BsgI	GTGCAG	1 cut(s)	29
BshFI	GGCC	3 cut(s)	156, 165, 674
BslFI	GGGAC	1 cut(s)	600
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmAI	GTCTC	3 cut(s)	204, 216, 259
BsmFI	GGGAC	1 cut(s)	600
BsnI	GGCC	3 cut(s)	156, 165, 674
Bsp143I	GATC	4 cut(s)	63, 301, 683, 688
BspANI	GGCC	3 cut(s)	156, 165, 674
BspCNI	CTCAG	3 cut(s)	208, 269, 409
BspMAI	CTGCAG	1 cut(s)	364
BspMI	ACCTGC	1 cut(s)	703
BspPI	GGATC	3 cut(s)	71, 296, 691
BsrDI	GCAATG	1 cut(s)	253
BsrI	ACTGG	3 cut(s)	336, 375, 675
BssECI	CCNNGG	2 cut(s)	58, 124
BssMI	GATC	4 cut(s)	63, 301, 683, 688
BssNAI	GTATAC	1 cut(s)	750
BssT1I	CCWWGG	2 cut(s)	58, 124
Bst1107I	GTATAC	1 cut(s)	750
Bst2UI	CCWGG	2 cut(s)	671, 735
Bst4CI	ACNGT	7 cut(s)	35, 121, 141, 183, 446, 464, 591
BstC8I	GCNNGC	3 cut(s)	354, 407, 742
BstDEI	CTNAG	3 cut(s)	195, 256, 417
BstENI	CCTNNNNNAGG	1 cut(s)	216
BstF5I	GGATG	2 cut(s)	54, 88
BstKTI	GATC	4 cut(s)	66, 304, 686, 691
BstMAI	GTCTC	3 cut(s)	204, 216, 259
BstMBI	GATC	4 cut(s)	63, 301, 683, 688
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 616
BstNI	CCWGG	2 cut(s)	671, 735
BstNSI	RCATGY	1 cut(s)	744
BstSCI	CCNGG	2 cut(s)	669, 733
BstSFI	CTRYAG	1 cut(s)	360
BstV1I	GCAGC	3 cut(s)	191, 194, 641
BstV2I	GAAGAC	1 cut(s)	43
BstX2I	RGATCY	2 cut(s)	63, 301
BstYI	RGATCY	2 cut(s)	63, 301
BstZ17I	GTATAC	1 cut(s)	750
BsuRI	GGCC	3 cut(s)	156, 165, 674
BtrI	CACGTC	1 cut(s)	49
BtsCI	GGATG	2 cut(s)	54, 88
BtsIMutI	CAGTG	4 cut(s)	179, 382, 460, 632
BveI	ACCTGC	1 cut(s)	703
Cac8I	GCNNGC	3 cut(s)	354, 407, 742
CaiI	CAGNNNCTG	1 cut(s)	359
CseI	GACGC	2 cut(s)	185, 722
Csp6I	GTAC	2 cut(s)	31, 329
CviAII	CATG	4 cut(s)	239, 594, 741, 766
CviQI	GTAC	2 cut(s)	31, 329
DdeI	CTNAG	3 cut(s)	195, 256, 417
DpnI	GATC	4 cut(s)	65, 303, 685, 690
DpnII	GATC	4 cut(s)	63, 301, 683, 688
DriI	GACNNNNNGTC	1 cut(s)	181
EaeI	YGGCCR	2 cut(s)	154, 672
Eam1105I	GACNNNNNGTC	1 cut(s)	181
Eco130I	CCWWGG	2 cut(s)	58, 124
Eco57I	CTGAAG	3 cut(s)	80, 471, 720
EcoNI	CCTNNNNNAGG	1 cut(s)	216
EcoRII	CCWGG	2 cut(s)	669, 733
EcoT14I	CCWWGG	2 cut(s)	58, 124
ErhI	CCWWGG	2 cut(s)	58, 124
FaeI	CATG	4 cut(s)	242, 597, 744, 769
FaqI	GGGAC	1 cut(s)	600
FatI	CATG	4 cut(s)	238, 593, 740, 765
FblI	GTMKAC	1 cut(s)	749
Fnu4HI	GCNGC	3 cut(s)	205, 208, 655
FokI	GGATG	2 cut(s)	41, 95
Fsp4HI	GCNGC	3 cut(s)	205, 208, 655
GluI	GCNGC	3 cut(s)	205, 208, 655
GsuI	CTGGAG	1 cut(s)	756
HaeIII	GGCC	3 cut(s)	156, 165, 674
HgaI	GACGC	2 cut(s)	185, 722
Hin1II	CATG	4 cut(s)	242, 597, 744, 769
HindIII	AAGCTT	1 cut(s)	608
HinfI	GANTC	2 cut(s)	557, 730
HphI	GGTGA	1 cut(s)	566
Hpy166II	GTNNAC	3 cut(s)	430, 750, 785
Hpy188I	TCNGA	5 cut(s)	99, 145, 259, 418, 688
Hpy188III	TCNNGA	6 cut(s)	18, 76, 299, 431, 640, 719
Hpy8I	GTNNAC	3 cut(s)	430, 750, 785
HpyAV	CCTTC	5 cut(s)	73, 315, 393, 486, 540
HpyCH4III	ACNGT	7 cut(s)	35, 121, 141, 183, 446, 464, 591
HpyCH4IV	ACGT	2 cut(s)	48, 503
HpyCH4V	TGCA	7 cut(s)	46, 111, 246, 362, 576, 657, 818
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 616
HpyF3I	CTNAG	3 cut(s)	195, 256, 417
HpySE526I	ACGT	2 cut(s)	48, 503
Hsp92II	CATG	4 cut(s)	242, 597, 744, 769
Kzo9I	GATC	4 cut(s)	63, 301, 683, 688
LmnI	GCTCC	2 cut(s)	721, 737
Lsp1109I	GCAGC	3 cut(s)	191, 194, 641
MaeII	ACGT	2 cut(s)	48, 503
MaeIII	GTNAC	2 cut(s)	173, 629
MalI	GATC	4 cut(s)	65, 303, 685, 690
MboI	GATC	4 cut(s)	63, 301, 683, 688
MboII	GAAGA	5 cut(s)	43, 86, 141, 352, 477
MflI	RGATCY	2 cut(s)	63, 301
MlsI	TGGCCA	1 cut(s)	674
MluCI	AATT	4 cut(s)	268, 412, 481, 496
MluNI	TGGCCA	1 cut(s)	674
MmeI	TCCRAC	1 cut(s)	523
MnlI	CCTC	2 cut(s)	204, 795
Mox20I	TGGCCA	1 cut(s)	674
MscI	TGGCCA	1 cut(s)	674
MseI	TTAA	3 cut(s)	23, 531, 621
MslI	CAYNNNNRTG	1 cut(s)	435
Msp20I	TGGCCA	1 cut(s)	674
MspA1I	CMGCKG	1 cut(s)	491
MspR9I	CCNGG	2 cut(s)	671, 735
MvaI	CCWGG	2 cut(s)	671, 735
MwoI	GCNNNNNNNGC	2 cut(s)	162, 616
NdeII	GATC	4 cut(s)	63, 301, 683, 688
NlaIII	CATG	4 cut(s)	242, 597, 744, 769
NmeAIII	GCCGAG	1 cut(s)	47
NmuCI	GTSAC	2 cut(s)	173, 629
NspI	RCATGY	1 cut(s)	744
PaeI	GCATGC	1 cut(s)	744
PfeI	GAWTC	2 cut(s)	557, 730
PfoI	TCCNGGA	1 cut(s)	733
PkrI	GCNGC	3 cut(s)	206, 209, 656
PshBI	ATTAAT	1 cut(s)	531
Psp6I	CCWGG	2 cut(s)	669, 733
PspGI	CCWGG	2 cut(s)	669, 733
PstI	CTGCAG	1 cut(s)	364
PstNI	CAGNNNCTG	1 cut(s)	359
PsuI	RGATCY	2 cut(s)	63, 301
PvuII	CAGCTG	1 cut(s)	491
RsaI	GTAC	2 cut(s)	32, 330
RsaNI	GTAC	2 cut(s)	31, 329
RseI	CAYNNNNRTG	1 cut(s)	435
SaqAI	TTAA	3 cut(s)	23, 531, 621
SatI	GCNGC	3 cut(s)	205, 208, 655
Sau3AI	GATC	4 cut(s)	63, 301, 683, 688
ScaI	AGTACT	1 cut(s)	330
ScrFI	CCNGG	2 cut(s)	671, 735
SetI	ASST	9 cut(s)	51, 358, 404, 493, 506, 556, 612, 656, 697
SfcI	CTRYAG	1 cut(s)	360
SfiI	GGCCNNNNNGGCC	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	435
SphI	GCATGC	1 cut(s)	744
Sse9I	AATT	4 cut(s)	268, 412, 481, 496
SspI	AATATT	1 cut(s)	371
StyD4I	CCNGG	2 cut(s)	669, 733
StyI	CCWWGG	2 cut(s)	58, 124
TaaI	ACNGT	7 cut(s)	35, 121, 141, 183, 446, 464, 591
TaiI	ACGT	2 cut(s)	51, 506
TaqI	TCGA	1 cut(s)	708
TasI	AATT	4 cut(s)	268, 412, 481, 496
TatI	WGTACW	2 cut(s)	30, 328
TfiI	GAWTC	2 cut(s)	557, 730
Tru1I	TTAA	3 cut(s)	23, 531, 621
Tru9I	TTAA	3 cut(s)	23, 531, 621
TscAI	CASTG	4 cut(s)	186, 382, 467, 632
TseFI	GTSAC	2 cut(s)	173, 629
TseI	GCWGC	3 cut(s)	204, 207, 654
Tsp45I	GTSAC	2 cut(s)	173, 629
TspDTI	ATGAA	1 cut(s)	43
TspRI	CASTG	4 cut(s)	186, 382, 467, 632
VspI	ATTAAT	1 cut(s)	531
XagI	CCTNNNNNAGG	1 cut(s)	216
XapI	RAATTY	1 cut(s)	481
XceI	RCATGY	1 cut(s)	744
XmiI	GTMKAC	1 cut(s)	749
ZrmI	AGTACT	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.