Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005830

Physical Location & Seq

Genomic Coordinates Reverse (-)

18039190 .. 18049226

Gene Structure 10037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G192800.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGAAAATGTCCATTTCCAGATTAAACTTATTCTTGCTATTCTTTCACCTATTAATCCTTCAATTCTCCCCAAGAATCTCAGCCATCAGGAAGGATGTTGGATTTCAAGGGAGGCGCATTTGCAAAAATACGGTCCTAGGAAGATACTTACTATCTGATGATAATGGCCATGTCTGTGACGCTCTGTCTTTAAATCCGCAGTCTCGCTGCTGCCCTGAAAAAGGAGAAAAATTCTCTTGTCATGGCTGCAATGTAGTTTCAGAGTGTTGTGATTCTTATGAATATTGTGTTTCATGCTGTCTAAATCCCTCAAGGATAAAAGAGGAACAAGTAATGAATGTGAAGGTTGCCAAACCAGCTACTGCAGGGAAATATTCAAATGTTTTTGATTTCTGTGCTGGGAGGTGTCGTCATAATTCTGAGAGTGTGGTCCACGAAAATGCTTACCTTAGTGATTTCCATCACTGTTTTTCTCTGCCATCAAATTCGTCAGCTGCAAATTATACATTTTTAGAAGCCAGACTGAATGGCATTAATGTTCTTGTTGGAAGGCGAGGTCAATCATGCGATTCAGTTTGCAAGTCAAAGGGACAATCATGTGTTCCAAATAAGCTTTTGGTACTTAATCAGTGTGACATTATGCAGAAATATATGAGCTGCAAGGGAACTTGCCTGGCAAGTATTGGTCCAGACCAACCCGCTGAAGTTGTTGATGATGCTCCTGAAGATTTGTATATGACACTCAATGGAGCATTAATACCGCTTATTACTTTCAGAATCCTGGAGCATGCTTGTTTACTCAAACACAATCAATGCTTTCTTGTTATGGTTCACATCAGCATACCAGGAGACTCTGCCCTTGTGCATAGTGCAGTATCTGGATTTCCCATCAAAGGCATGAATTGTGGGGATTATATATCTTGTATGCAAGTTTCATTTCTAGTTCCACTTGGCCTGGTTTTTCCAAGTTGGAAAATCAAAATGCATTTTGCCCCAAGTTTTACAATGGCAAGATTAGCTCATTGTAAGGTATTTGATTTGAGCGCAAGCAAGCGGTGGCTCTGCTGTAATGGCCTCGGAGAACGAGGGGCATGCGCCATTGTGTTCTATGCCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2054 Glyco_transf_18

Protein Analysis

373

Amino Acids

41.12

Weight (kDa)

8.46

Isoelectric Point (pI)

54.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59390 AT3G59390
fragaria_vesca	FvH4_4g10770 FvH4_4g10770 FvH4_4g10770 FvH4_4g10770
malus_domestica	MD04G1040100.v1.1
prunus_persica	Prupe.1G192800_v2.0.a1 Prupe.1G192800_v2.0.a1 Prupe.1G192800_v2.0.a1 Prupe.1G192800_v2.0.a1 Prupe.1G193700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0406391 RchiOBHm_Chr4g0406831
rosa_laevigata	RLG00000008753 RLG00000008755
rosa_multiflora	Rmu_sc0008087.1_g000003
rosa_roxburghii	Rroxscaffold_5G00351600
rosa_rugosa	Rorug04G0074200 Rorug04G0074300 Rorug04G0085000.1
rosa_samantha	Rh4AG141200 Rh4BG137600 Rh4CG147900 Rh4DG134900 Rh4DG135000
rosa_wichuraiana	Rw4G011470 Rw4G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	197, 699, 761, 1054
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	2 cut(s)	230, 484
AcuI	CTGAAG	2 cut(s)	723, 744
AfaI	GTAC	1 cut(s)	621
AfiI	CCNNNNNNNGG	2 cut(s)	221, 893
AgsI	TTSAA	3 cut(s)	62, 107, 378
AhdI	GACNNNNNGTC	1 cut(s)	184
AjnI	CCWGG	4 cut(s)	672, 780, 844, 954
AluBI	AGCT	5 cut(s)	359, 494, 613, 657, 1019
AluI	AGCT	5 cut(s)	359, 494, 613, 657, 1019
Alw26I	GTCTC	2 cut(s)	207, 843
AlwNI	CAGNNNCTG	2 cut(s)	362, 878
AoxI	GGCC	3 cut(s)	166, 952, 1072
ApeKI	GCWGC	5 cut(s)	207, 210, 246, 494, 657
ApoI	RAATTY	2 cut(s)	230, 484
ArsI	GACNNNNNNTTYG	2 cut(s)	117, 149
AseI	ATTAAT	3 cut(s)	53, 534, 755
AspA2I	CCTAGG	1 cut(s)	136
AspLEI	GCGC	3 cut(s)	117, 1046, 1097
AspS9I	GGNCC	3 cut(s)	133, 430, 686
AsuHPI	GGTGA	1 cut(s)	38
AvaII	GGWCC	3 cut(s)	133, 430, 686
AvrII	CCTAGG	1 cut(s)	136
BalI	TGGCCA	1 cut(s)	168
BbvI	GCAGC	5 cut(s)	194, 197, 233, 481, 644
BccI	CCATC	4 cut(s)	92, 468, 487, 896
BcgI	CGANNNNNNTGC	2 cut(s)	1074, 1108
BciT130I	CCWGG	4 cut(s)	674, 782, 846, 956
BcoDI	GTCTC	2 cut(s)	207, 843
BfaI	CTAG	3 cut(s)	137, 941, 1117
BfmI	CTRYAG	1 cut(s)	363
BisI	GCNGC	5 cut(s)	208, 211, 247, 495, 658
BlnI	CCTAGG	1 cut(s)	136
BlsI	GCNGC	5 cut(s)	209, 212, 248, 496, 659
Bme1390I	CCNGG	4 cut(s)	674, 782, 846, 956
Bme18I	GGWCC	3 cut(s)	133, 430, 686
BmeRI	GACNNNNNGTC	1 cut(s)	184
BmgT120I	GGNCC	3 cut(s)	133, 430, 686
BmrFI	CCNGG	4 cut(s)	674, 782, 846, 956
BmsI	GCATC	1 cut(s)	706
BpmI	CTGGAG	1 cut(s)	803
BpuEI	CTTGAG	1 cut(s)	295
BsaBI	GATNNNNATC	1 cut(s)	459
BsaJI	CCNNGG	2 cut(s)	136, 1075
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 893
Bse3DI	GCAATG	1 cut(s)	256
Bse8I	GATNNNNATC	1 cut(s)	459
BseBI	CCWGG	4 cut(s)	674, 782, 846, 956
BseDI	CCNNGG	2 cut(s)	136, 1075
BseGI	GGATG	1 cut(s)	100
BseJI	GATNNNNATC	1 cut(s)	459
BseLI	CCNNNNNNNGG	2 cut(s)	221, 893
BseMI	GCAATG	1 cut(s)	256
BseMII	CTCAG	2 cut(s)	93, 411
BseXI	GCAGC	5 cut(s)	194, 197, 233, 481, 644
BseYI	CCCAGC	1 cut(s)	398
BsgI	GTGCAG	1 cut(s)	891
BshFI	GGCC	3 cut(s)	168, 954, 1074
BslFI	GGGAC	1 cut(s)	603
BslI	CCNNNNNNNGG	2 cut(s)	221, 893
BsmAI	GTCTC	2 cut(s)	207, 843
BsmFI	GGGAC	1 cut(s)	603
BsnI	GGCC	3 cut(s)	168, 954, 1074
BspACI	CCGC	4 cut(s)	197, 699, 761, 1054
BspANI	GGCC	3 cut(s)	168, 954, 1074
BspCNI	CTCAG	2 cut(s)	92, 412
BspMAI	CTGCAG	1 cut(s)	367
BsrDI	GCAATG	1 cut(s)	256
BssECI	CCNNGG	2 cut(s)	136, 1075
BssT1I	CCWWGG	1 cut(s)	136
Bst2UI	CCWGG	4 cut(s)	674, 782, 846, 956
Bst4CI	ACNGT	2 cut(s)	133, 467
BstC8I	GCNNGC	4 cut(s)	789, 1048, 1052, 1093
BstDEI	CTNAG	3 cut(s)	79, 420, 449
BstENI	CCTNNNNNAGG	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	100
BstHHI	GCGC	3 cut(s)	117, 1046, 1097
BstMAI	GTCTC	2 cut(s)	207, 843
BstMWI	GCNNNNNNNGC	3 cut(s)	356, 1016, 1071
BstNI	CCWGG	4 cut(s)	674, 782, 846, 956
BstNSI	RCATGY	2 cut(s)	791, 1095
BstSCI	CCNGG	4 cut(s)	672, 780, 844, 954
BstSFI	CTRYAG	1 cut(s)	363
BstV1I	GCAGC	5 cut(s)	194, 197, 233, 481, 644
BsuRI	GGCC	3 cut(s)	168, 954, 1074
BtsCI	GGATG	1 cut(s)	100
BtsIMutI	CAGTG	2 cut(s)	463, 635
Cac8I	GCNNGC	4 cut(s)	789, 1048, 1052, 1093
CaiI	CAGNNNCTG	2 cut(s)	362, 878
CfoI	GCGC	3 cut(s)	117, 1046, 1097
Cfr13I	GGNCC	3 cut(s)	133, 430, 686
CseI	GACGC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	620
CviAII	CATG	8 cut(s)	170, 242, 294, 564, 597, 788, 898, 1092
CviQI	GTAC	1 cut(s)	620
DdeI	CTNAG	3 cut(s)	79, 420, 449
DraI	TTTAAA	1 cut(s)	192
DriI	GACNNNNNGTC	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	166
Eam1105I	GACNNNNNGTC	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	136
Eco47I	GGWCC	3 cut(s)	133, 430, 686
Eco57I	CTGAAG	2 cut(s)	723, 744
EcoNI	CCTNNNNNAGG	1 cut(s)	219
EcoRII	CCWGG	4 cut(s)	672, 780, 844, 954
EcoT14I	CCWWGG	1 cut(s)	136
EcoT22I	ATGCAT	1 cut(s)	987
ErhI	CCWWGG	1 cut(s)	136
FaeI	CATG	8 cut(s)	173, 245, 297, 567, 600, 791, 901, 1095
FaqI	GGGAC	1 cut(s)	603
FatI	CATG	8 cut(s)	169, 241, 293, 563, 596, 787, 897, 1091
FauI	CCCGC	1 cut(s)	706
Fnu4HI	GCNGC	5 cut(s)	208, 211, 247, 495, 658
FokI	GGATG	1 cut(s)	107
Fsp4HI	GCNGC	5 cut(s)	208, 211, 247, 495, 658
FspBI	CTAG	3 cut(s)	137, 941, 1117
GlaI	GCGC	3 cut(s)	116, 1045, 1096
GluI	GCNGC	5 cut(s)	208, 211, 247, 495, 658
GsaI	CCCAGC	1 cut(s)	402
GsuI	CTGGAG	1 cut(s)	803
HaeIII	GGCC	3 cut(s)	168, 954, 1074
HgaI	GACGC	1 cut(s)	188
HhaI	GCGC	3 cut(s)	117, 1046, 1097
Hin1II	CATG	8 cut(s)	173, 245, 297, 567, 600, 791, 901, 1095
Hin6I	GCGC	3 cut(s)	115, 1044, 1095
HinP1I	GCGC	3 cut(s)	115, 1044, 1095
HindIII	AAGCTT	1 cut(s)	611
HinfI	GANTC	5 cut(s)	75, 272, 569, 777, 851
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	3 cut(s)	433, 797, 832
Hpy188I	TCNGA	5 cut(s)	157, 262, 421, 776, 1079
Hpy188III	TCNNGA	5 cut(s)	18, 88, 689, 722, 879
Hpy8I	GTNNAC	3 cut(s)	433, 797, 832
HpyAV	CCTTC	4 cut(s)	68, 85, 337, 543
HpyCH4III	ACNGT	2 cut(s)	133, 467
HpyF10VI	GCNNNNNNNGC	3 cut(s)	356, 1016, 1071
HpyF3I	CTNAG	3 cut(s)	79, 420, 449
Hsp92II	CATG	8 cut(s)	173, 245, 297, 567, 600, 791, 901, 1095
HspAI	GCGC	3 cut(s)	115, 1044, 1095
LmnI	GCTCC	3 cut(s)	724, 749, 784
Lsp1109I	GCAGC	5 cut(s)	194, 197, 233, 481, 644
LweI	GCATC	1 cut(s)	706
MaeI	CTAG	3 cut(s)	137, 941, 1117
MaeIII	GTNAC	2 cut(s)	176, 632
MboII	GAAGA	2 cut(s)	153, 737
MlsI	TGGCCA	1 cut(s)	168
MluCI	AATT	6 cut(s)	62, 230, 415, 484, 499, 901
MluNI	TGGCCA	1 cut(s)	168
MlyI	GAGTC	1 cut(s)	845
MmeI	TCCRAC	3 cut(s)	79, 526, 950
MnlI	CCTC	7 cut(s)	105, 316, 319, 396, 548, 1079, 1085
Mox20I	TGGCCA	1 cut(s)	168
Mph1103I	ATGCAT	1 cut(s)	987
MscI	TGGCCA	1 cut(s)	168
MseI	TTAA	6 cut(s)	23, 53, 191, 534, 624, 755
MslI	CAYNNNNRTG	2 cut(s)	174, 438
Msp20I	TGGCCA	1 cut(s)	168
MspA1I	CMGCKG	2 cut(s)	494, 701
MspR9I	CCNGG	4 cut(s)	674, 782, 846, 956
MvaI	CCWGG	4 cut(s)	674, 782, 846, 956
MwoI	GCNNNNNNNGC	3 cut(s)	356, 1016, 1071
NlaIII	CATG	8 cut(s)	173, 245, 297, 567, 600, 791, 901, 1095
NmuCI	GTSAC	2 cut(s)	176, 632
NsiI	ATGCAT	1 cut(s)	987
NspI	RCATGY	2 cut(s)	791, 1095
PaeI	GCATGC	2 cut(s)	791, 1095
PfeI	GAWTC	4 cut(s)	75, 272, 569, 777
PfoI	TCCNGGA	1 cut(s)	780
PkrI	GCNGC	5 cut(s)	209, 212, 248, 496, 659
PleI	GAGTC	1 cut(s)	845
PpsI	GAGTC	1 cut(s)	845
PshBI	ATTAAT	3 cut(s)	53, 534, 755
Psp6I	CCWGG	4 cut(s)	672, 780, 844, 954
PspFI	CCCAGC	1 cut(s)	398
PspGI	CCWGG	4 cut(s)	672, 780, 844, 954
PspPI	GGNCC	3 cut(s)	133, 430, 686
PstI	CTGCAG	1 cut(s)	367
PstNI	CAGNNNCTG	2 cut(s)	362, 878
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	1 cut(s)	621
RsaNI	GTAC	1 cut(s)	620
RseI	CAYNNNNRTG	2 cut(s)	174, 438
SaqAI	TTAA	6 cut(s)	23, 53, 191, 534, 624, 755
SatI	GCNGC	5 cut(s)	208, 211, 247, 495, 658
Sau96I	GGNCC	3 cut(s)	133, 430, 686
SchI	GAGTC	1 cut(s)	845
ScrFI	CCNGG	4 cut(s)	674, 782, 846, 956
SfaNI	GCATC	1 cut(s)	706
SfcI	CTRYAG	1 cut(s)	363
SinI	GGWCC	3 cut(s)	133, 430, 686
SmiMI	CAYNNNNRTG	2 cut(s)	174, 438
SmlI	CTYRAG	1 cut(s)	310
SmoI	CTYRAG	1 cut(s)	310
SphI	GCATGC	2 cut(s)	791, 1095
Sse9I	AATT	6 cut(s)	62, 230, 415, 484, 499, 901
SsiI	CCGC	4 cut(s)	197, 699, 761, 1054
SspI	AATATT	2 cut(s)	284, 374
SspMI	CTAG	3 cut(s)	137, 941, 1117
StyD4I	CCNGG	4 cut(s)	672, 780, 844, 954
StyI	CCWWGG	1 cut(s)	136
TaaI	ACNGT	2 cut(s)	133, 467
TasI	AATT	6 cut(s)	62, 230, 415, 484, 499, 901
TfiI	GAWTC	4 cut(s)	75, 272, 569, 777
Tru1I	TTAA	6 cut(s)	23, 53, 191, 534, 624, 755
Tru9I	TTAA	6 cut(s)	23, 53, 191, 534, 624, 755
TscAI	CASTG	2 cut(s)	470, 635
TseFI	GTSAC	2 cut(s)	176, 632
TseI	GCWGC	5 cut(s)	207, 210, 246, 494, 657
Tsp45I	GTSAC	2 cut(s)	176, 632
TspDTI	ATGAA	6 cut(s)	17, 282, 294, 350, 914, 924
TspRI	CASTG	2 cut(s)	470, 635
VpaK11BI	GGWCC	3 cut(s)	133, 430, 686
VspI	ATTAAT	3 cut(s)	53, 534, 755
XagI	CCTNNNNNAGG	1 cut(s)	219
XapI	RAATTY	2 cut(s)	230, 484
XceI	RCATGY	2 cut(s)	791, 1095
XmaJI	CCTAGG	1 cut(s)	136
XspI	CTAG	3 cut(s)	137, 941, 1117
Zsp2I	ATGCAT	1 cut(s)	987

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.