Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005830

Physical Location & Seq

Genomic Coordinates Reverse (-)

18218069 .. 18219352

Gene Structure 1284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G193700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAAAATGTCTATTTCCAGATTAAACTTATTCTTGCTATTCTTTCACCTATTAATCCTTCAATTCTCCCCAAGAATCTCAGCCATCAGGAAGGATGTTGGATTTCAAGGGAGGCGCATTTGCAAAAATACGGTCCTAGGAAGATACTTACTATCTGATGATAATGGCCATGTCTGTGACGCTCTGTCTTTAAATCCACAGTCTCGCTGCTGCCCTGAAAAAGGAGAAAAATTCTCTTGTCATGGCTGCAATGTAGTTTCAGAGTGTTGTGATTCTTATGAATATTGTGTTTCATGCTGTCTAAATCCCTCAAGGGATAACCATGACGGGGAGGAAAGCTCGATTTATTATGTGAGTAGACAATTATGGTTAGATGAAACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2054 Glyco_transf_18

Protein Analysis

128

Amino Acids

14.54

Weight (kDa)

6.39

Isoelectric Point (pI)

64.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59390 AT3G59390
fragaria_vesca	FvH4_4g10770 FvH4_4g10770 FvH4_4g10770 FvH4_4g10770
malus_domestica	MD04G1040100.v1.1
prunus_persica	Prupe.1G192800_v2.0.a1 Prupe.1G192800_v2.0.a1 Prupe.1G192800_v2.0.a1 Prupe.1G192800_v2.0.a1 Prupe.1G193700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0406391 RchiOBHm_Chr4g0406831
rosa_laevigata	RLG00000008753 RLG00000008755
rosa_multiflora	Rmu_sc0008087.1_g000003
rosa_roxburghii	Rroxscaffold_5G00351600
rosa_rugosa	Rorug04G0074200 Rorug04G0074300 Rorug04G0085000.1
rosa_samantha	Rh4AG141200 Rh4BG137600 Rh4CG147900 Rh4DG134900 Rh4DG135000
rosa_wichuraiana	Rw4G011470 Rw4G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	358
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	230
AfiI	CCNNNNNNNGG	2 cut(s)	221, 328
AgsI	TTSAA	2 cut(s)	62, 107
AhdI	GACNNNNNGTC	1 cut(s)	184
AluBI	AGCT	1 cut(s)	339
AluI	AGCT	1 cut(s)	339
Alw26I	GTCTC	1 cut(s)	207
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	3 cut(s)	207, 210, 246
ApoI	RAATTY	1 cut(s)	230
ArsI	GACNNNNNNTTYG	2 cut(s)	117, 149
AseI	ATTAAT	1 cut(s)	53
AspA2I	CCTAGG	1 cut(s)	136
AspLEI	GCGC	1 cut(s)	117
AspS9I	GGNCC	1 cut(s)	133
AsuHPI	GGTGA	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	133
AvrII	CCTAGG	1 cut(s)	136
BalI	TGGCCA	1 cut(s)	168
BbvI	GCAGC	3 cut(s)	194, 197, 233
BccI	CCATC	1 cut(s)	92
BcoDI	GTCTC	1 cut(s)	207
BfaI	CTAG	1 cut(s)	137
BisI	GCNGC	3 cut(s)	208, 211, 247
BlnI	CCTAGG	1 cut(s)	136
BlsI	GCNGC	3 cut(s)	209, 212, 248
Bme18I	GGWCC	1 cut(s)	133
BmeRI	GACNNNNNGTC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	133
BplI	GAGNNNNNCTC	2 cut(s)	323, 355
BpuEI	CTTGAG	1 cut(s)	295
BsaJI	CCNNGG	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 328
Bse3DI	GCAATG	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	1 cut(s)	100
BseLI	CCNNNNNNNGG	2 cut(s)	221, 328
BseMI	GCAATG	1 cut(s)	256
BseMII	CTCAG	1 cut(s)	93
BseXI	GCAGC	3 cut(s)	194, 197, 233
BshFI	GGCC	1 cut(s)	168
BslI	CCNNNNNNNGG	2 cut(s)	221, 328
BsmAI	GTCTC	1 cut(s)	207
BsnI	GGCC	1 cut(s)	168
BspANI	GGCC	1 cut(s)	168
BspCNI	CTCAG	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	136
Bst4CI	ACNGT	2 cut(s)	133, 201
BstDEI	CTNAG	1 cut(s)	79
BstENI	CCTNNNNNAGG	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	100
BstHHI	GCGC	1 cut(s)	117
BstMAI	GTCTC	1 cut(s)	207
BstV1I	GCAGC	3 cut(s)	194, 197, 233
BsuRI	GGCC	1 cut(s)	168
BtsCI	GGATG	1 cut(s)	100
CfoI	GCGC	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	133
CseI	GACGC	1 cut(s)	188
CviAII	CATG	4 cut(s)	170, 242, 294, 323
CviJI	RGCY	4 cut(s)	83, 168, 246, 339
CviKI_1	RGCY	4 cut(s)	83, 168, 246, 339
DdeI	CTNAG	1 cut(s)	79
DraI	TTTAAA	1 cut(s)	192
DriI	GACNNNNNGTC	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	166
Eam1105I	GACNNNNNGTC	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	133
EcoNI	CCTNNNNNAGG	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	136
FaeI	CATG	4 cut(s)	173, 245, 297, 326
FaiI	YATR	7 cut(s)	171, 243, 279, 295, 324, 351, 367
FatI	CATG	4 cut(s)	169, 241, 293, 322
FblI	GTMKAC	1 cut(s)	358
Fnu4HI	GCNGC	3 cut(s)	208, 211, 247
FokI	GGATG	1 cut(s)	107
Fsp4HI	GCNGC	3 cut(s)	208, 211, 247
FspBI	CTAG	1 cut(s)	137
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	3 cut(s)	208, 211, 247
HaeIII	GGCC	1 cut(s)	168
HgaI	GACGC	1 cut(s)	188
HhaI	GCGC	1 cut(s)	117
Hin1II	CATG	4 cut(s)	173, 245, 297, 326
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HinfI	GANTC	2 cut(s)	75, 272
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	1 cut(s)	359
Hpy188I	TCNGA	2 cut(s)	157, 262
Hpy188III	TCNNGA	2 cut(s)	18, 88
Hpy8I	GTNNAC	1 cut(s)	359
HpyAV	CCTTC	2 cut(s)	68, 85
HpyCH4III	ACNGT	2 cut(s)	133, 201
HpyCH4IV	ACGT	1 cut(s)	380
HpyCH4V	TGCA	2 cut(s)	123, 249
HpyF3I	CTNAG	1 cut(s)	79
HpySE526I	ACGT	1 cut(s)	380
Hsp92II	CATG	4 cut(s)	173, 245, 297, 326
HspAI	GCGC	1 cut(s)	115
LpnPI	CCDG	3 cut(s)	31, 73, 228
Lsp1109I	GCAGC	3 cut(s)	194, 197, 233
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	1 cut(s)	380
MaeIII	GTNAC	1 cut(s)	176
MboII	GAAGA	1 cut(s)	153
MlsI	TGGCCA	1 cut(s)	168
MluCI	AATT	3 cut(s)	62, 230, 362
MluNI	TGGCCA	1 cut(s)	168
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	3 cut(s)	105, 319, 325
Mox20I	TGGCCA	1 cut(s)	168
MscI	TGGCCA	1 cut(s)	168
MseI	TTAA	3 cut(s)	23, 53, 191
MslI	CAYNNNNRTG	1 cut(s)	174
Msp20I	TGGCCA	1 cut(s)	168
NlaIII	CATG	4 cut(s)	173, 245, 297, 326
NmuCI	GTSAC	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	75, 272
PkrI	GCNGC	3 cut(s)	209, 212, 248
PshBI	ATTAAT	1 cut(s)	53
PspPI	GGNCC	1 cut(s)	133
RseI	CAYNNNNRTG	1 cut(s)	174
SaqAI	TTAA	3 cut(s)	23, 53, 191
SatI	GCNGC	3 cut(s)	208, 211, 247
Sau96I	GGNCC	1 cut(s)	133
SetI	ASST	3 cut(s)	51, 341, 383
SinI	GGWCC	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	310
SmoI	CTYRAG	1 cut(s)	310
Sse9I	AATT	3 cut(s)	62, 230, 362
SspI	AATATT	1 cut(s)	284
SspMI	CTAG	1 cut(s)	137
StyI	CCWWGG	1 cut(s)	136
TaaI	ACNGT	2 cut(s)	133, 201
TaiI	ACGT	1 cut(s)	383
TaqI	TCGA	1 cut(s)	341
TasI	AATT	3 cut(s)	62, 230, 362
TfiI	GAWTC	2 cut(s)	75, 272
Tru1I	TTAA	3 cut(s)	23, 53, 191
Tru9I	TTAA	3 cut(s)	23, 53, 191
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	3 cut(s)	207, 210, 246
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	3 cut(s)	17, 282, 294
VpaK11BI	GGWCC	1 cut(s)	133
VspI	ATTAAT	1 cut(s)	53
XagI	CCTNNNNNAGG	1 cut(s)	219
XapI	RAATTY	1 cut(s)	230
XmaJI	CCTAGG	1 cut(s)	136
XmiI	GTMKAC	1 cut(s)	358
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.