Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0005830

Physical Location & Seq

Genomic Coordinates Reverse (-)

4693257 .. 4706739

Gene Structure 13483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1040100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGGAATACCCATATCCAGATCAAACTTATCCTTGCTATTCTTTCACCTGTTCATCCTTCAATTCTCCCCCAGAATCTCAGCCATCAGGAAGGATGTTGGCTTTCAAACGAAGCGCTTTTGCAAAAATACTGTCCAAGGAAGATACTTACTTTCTGATGATAATGGCCGTGTCTGTGATGCACTGACAGTAAATCACCAGTCCCGCTGCTGCCCTGAAAAAGGAGAAACATTCTCTTGTTATGGTTGCAACGTTGTTTCGGAGTGTTGTAATTCTTATGAATATTGTGTTTCATGCTGTCTAAATCCTTCAAGGATAACAGAGGAACAAGTAATAAAGGTGAAGATGGCAAAACCAGCTACAGCAGGGACATATTCTGGTGCTTTCGACTTCTGTGCTGGGAGGTGCCGTCATAATTCTGAGAGTGTGGTCCATGAAAATGCGTACCTTAGTGATTTCCATCACTGTTTTTCTCTGCCATCAAACTCTTCAGCTGCAAATTATACATTTTTAGAAGCCAGACTGAACGGCATTGATGTTCTTGTTGGAAGGCAAGGGCAATCATGCGATACAGTTTGCAAGTCAAAGGGACAATCGTGTGTTCCAAATAAGCTTTTGGTACTTAACCAGTGTGACATTATGCAGAAATATATGAGATGCAAGGGAACTTGCCTGGCAAGTATCGGTCCAGATCAACCTGCTGAAGTGGTTGATGATGCTCCTGAAGATTTGAATCCTGGAGCATGCTTGTTTACCCAAACACAATCAATGCTTTCTTGTTATGGTTCACATCAGCATACGAGGAGGCTTTGCCCTTGTGCGATTCGTCACAAAGGTCACCAGGATGAACTGTGGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2054 Glyco_transf_18

Protein Analysis

287

Amino Acids

31.73

Weight (kDa)

7.96

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPRING1	PF10218	37 - 157	1.7e-35	SREBP regulating gene protein
Glyco_transf_18	PF15024	176 - 273	7.8e-07	Glycosyltransferase family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59390 AT3G59390
fragaria_vesca	FvH4_4g10770 FvH4_4g10770 FvH4_4g10770 FvH4_4g10770
malus_domestica	MD04G1040100.v1.1
prunus_persica	Prupe.1G192800_v2.0.a1 Prupe.1G192800_v2.0.a1 Prupe.1G192800_v2.0.a1 Prupe.1G192800_v2.0.a1 Prupe.1G193700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0406391 RchiOBHm_Chr4g0406831
rosa_laevigata	RLG00000008753 RLG00000008755
rosa_multiflora	Rmu_sc0008087.1_g000003
rosa_roxburghii	Rroxscaffold_5G00351600
rosa_rugosa	Rorug04G0074200 Rorug04G0074300 Rorug04G0085000.1
rosa_samantha	Rh4AG141200 Rh4BG137600 Rh4CG147900 Rh4DG134900 Rh4DG135000
rosa_wichuraiana	Rw4G011470 Rw4G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	706
AccB1I	GGYRCC	1 cut(s)	405
AciI	CCGC	1 cut(s)	205
AclI	AACGTT	1 cut(s)	252
AcoI	YGGCCR	1 cut(s)	166
AcuI	CTGAAG	3 cut(s)	474, 723, 744
AfaI	GTAC	2 cut(s)	446, 621
AfeI	AGCGCT	1 cut(s)	116
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	4 cut(s)	62, 107, 312, 733
AjnI	CCWGG	3 cut(s)	672, 736, 840
AluBI	AGCT	3 cut(s)	359, 494, 613
AluI	AGCT	3 cut(s)	359, 494, 613
Aor51HI	AGCGCT	1 cut(s)	116
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	3 cut(s)	207, 210, 494
ArsI	GACNNNNNNTTYG	2 cut(s)	117, 149
AspLEI	GCGC	1 cut(s)	117
AspS9I	GGNCC	2 cut(s)	430, 686
AsuHPI	GGTGA	4 cut(s)	38, 188, 352, 830
AvaII	GGWCC	2 cut(s)	430, 686
BanI	GGYRCC	1 cut(s)	405
BbvI	GCAGC	3 cut(s)	194, 197, 481
BccI	CCATC	4 cut(s)	92, 340, 468, 487
BceAI	ACGGC	3 cut(s)	153, 393, 544
BcgI	CGANNNNNNTGC	2 cut(s)	377, 411
BciT130I	CCWGG	3 cut(s)	674, 738, 842
BfmI	CTRYAG	1 cut(s)	360
BfoI	RGCGCY	1 cut(s)	118
BfuAI	ACCTGC	1 cut(s)	706
BisI	GCNGC	3 cut(s)	208, 211, 495
BlsI	GCNGC	3 cut(s)	209, 212, 496
Bme1390I	CCNGG	3 cut(s)	674, 738, 842
Bme18I	GGWCC	2 cut(s)	430, 686
BmgT120I	GGNCC	2 cut(s)	430, 686
BmiI	GGNNCC	1 cut(s)	407
BmrFI	CCNGG	3 cut(s)	674, 738, 842
BmsI	GCATC	3 cut(s)	169, 647, 706
BpmI	CTGGAG	1 cut(s)	759
BsaBI	GATNNNNATC	2 cut(s)	459, 732
BsaJI	CCNNGG	1 cut(s)	136
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	2 cut(s)	199, 628
Bse8I	GATNNNNATC	2 cut(s)	459, 732
BseBI	CCWGG	3 cut(s)	674, 738, 842
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	3 cut(s)	54, 100, 850
BseJI	GATNNNNATC	2 cut(s)	459, 732
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMII	CTCAG	2 cut(s)	93, 411
BseNI	ACTGG	2 cut(s)	199, 628
BseRI	GAGGAG	1 cut(s)	817
BseXI	GCAGC	3 cut(s)	194, 197, 481
BseYI	CCCAGC	1 cut(s)	398
BshFI	GGCC	1 cut(s)	168
BshNI	GGYRCC	1 cut(s)	405
BslFI	GGGAC	3 cut(s)	187, 382, 603
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmFI	GGGAC	3 cut(s)	187, 382, 603
BsnI	GGCC	1 cut(s)	168
Bsp143I	GATC	2 cut(s)	20, 691
BspACI	CCGC	1 cut(s)	205
BspANI	GGCC	1 cut(s)	168
BspCNI	CTCAG	2 cut(s)	92, 412
BspLI	GGNNCC	1 cut(s)	407
BspMI	ACCTGC	1 cut(s)	706
BspT107I	GGYRCC	1 cut(s)	405
BsrI	ACTGG	2 cut(s)	199, 628
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	2 cut(s)	20, 691
BssT1I	CCWWGG	1 cut(s)	136
Bst2UI	CCWGG	3 cut(s)	674, 738, 842
Bst4CI	ACNGT	5 cut(s)	133, 190, 467, 574, 852
Bst6I	CTCTTC	1 cut(s)	493
BstC8I	GCNNGC	1 cut(s)	745
BstDEI	CTNAG	3 cut(s)	79, 420, 449
BstEII	GGTNACC	1 cut(s)	836
BstENI	CCTNNNNNAGG	1 cut(s)	219
BstF5I	GGATG	3 cut(s)	54, 100, 850
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	2 cut(s)	23, 694
BstMBI	GATC	2 cut(s)	20, 691
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstNI	CCWGG	3 cut(s)	674, 738, 842
BstNSI	RCATGY	1 cut(s)	747
BstPI	GGTNACC	1 cut(s)	836
BstSCI	CCNGG	3 cut(s)	672, 736, 840
BstSFI	CTRYAG	1 cut(s)	360
BstV1I	GCAGC	3 cut(s)	194, 197, 481
BsuRI	GGCC	1 cut(s)	168
BtsCI	GGATG	3 cut(s)	54, 100, 850
BtsIMutI	CAGTG	3 cut(s)	182, 463, 635
BveI	ACCTGC	1 cut(s)	706
Cac8I	GCNNGC	1 cut(s)	745
CfoI	GCGC	1 cut(s)	117
Cfr13I	GGNCC	2 cut(s)	430, 686
Csp6I	GTAC	2 cut(s)	445, 620
CviAII	CATG	4 cut(s)	294, 434, 564, 744
CviJI	RGCY	8 cut(s)	83, 102, 168, 359, 494, 518, 613, 808
CviKI_1	RGCY	8 cut(s)	83, 102, 168, 359, 494, 518, 613, 808
CviQI	GTAC	2 cut(s)	445, 620
DdeI	CTNAG	3 cut(s)	79, 420, 449
DpnI	GATC	2 cut(s)	22, 693
DpnII	GATC	2 cut(s)	20, 691
EaeI	YGGCCR	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	493
EarI	CTCTTC	1 cut(s)	493
Eco130I	CCWWGG	1 cut(s)	136
Eco47I	GGWCC	2 cut(s)	430, 686
Eco47III	AGCGCT	1 cut(s)	116
Eco57I	CTGAAG	3 cut(s)	474, 723, 744
Eco91I	GGTNACC	1 cut(s)	836
EcoNI	CCTNNNNNAGG	1 cut(s)	219
EcoO65I	GGTNACC	1 cut(s)	836
EcoRII	CCWGG	3 cut(s)	672, 736, 840
EcoT14I	CCWWGG	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	136
FaeI	CATG	4 cut(s)	297, 437, 567, 747
FaqI	GGGAC	3 cut(s)	187, 382, 603
FatI	CATG	4 cut(s)	293, 433, 563, 743
FauI	CCCGC	1 cut(s)	212
Fnu4HI	GCNGC	3 cut(s)	208, 211, 495
FokI	GGATG	3 cut(s)	41, 107, 857
Fsp4HI	GCNGC	3 cut(s)	208, 211, 495
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	3 cut(s)	208, 211, 495
GsaI	CCCAGC	1 cut(s)	402
GsuI	CTGGAG	1 cut(s)	759
HaeII	RGCGCY	1 cut(s)	118
HaeIII	GGCC	1 cut(s)	168
HhaI	GCGC	1 cut(s)	117
Hin1II	CATG	4 cut(s)	297, 437, 567, 747
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HindIII	AAGCTT	1 cut(s)	611
HinfI	GANTC	3 cut(s)	75, 733, 823
HphI	GGTGA	4 cut(s)	38, 188, 352, 830
Hpy166II	GTNNAC	2 cut(s)	753, 788
Hpy188I	TCNGA	3 cut(s)	157, 262, 421
Hpy188III	TCNNGA	4 cut(s)	18, 88, 689, 722
Hpy8I	GTNNAC	2 cut(s)	753, 788
HpyAV	CCTTC	4 cut(s)	68, 85, 318, 543
HpyCH4III	ACNGT	5 cut(s)	133, 190, 467, 574, 852
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	7 cut(s)	123, 182, 249, 497, 579, 643, 660
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpyF3I	CTNAG	3 cut(s)	79, 420, 449
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	4 cut(s)	297, 437, 567, 747
HspAI	GCGC	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	20, 691
LmnI	GCTCC	2 cut(s)	724, 740
Lsp1109I	GCAGC	3 cut(s)	194, 197, 481
LweI	GCATC	3 cut(s)	169, 647, 706
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	3 cut(s)	632, 827, 836
MalI	GATC	2 cut(s)	22, 693
MboI	GATC	2 cut(s)	20, 691
MboII	GAAGA	4 cut(s)	153, 355, 480, 737
MluCI	AATT	4 cut(s)	62, 271, 415, 499
MmeI	TCCRAC	1 cut(s)	526
MnlI	CCTC	4 cut(s)	316, 396, 795, 798
MseI	TTAA	1 cut(s)	624
MslI	CAYNNNNRTG	2 cut(s)	438, 843
MspA1I	CMGCKG	2 cut(s)	207, 494
MspR9I	CCNGG	3 cut(s)	674, 738, 842
MvaI	CCWGG	3 cut(s)	674, 738, 842
MwoI	GCNNNNNNNGC	1 cut(s)	356
NdeII	GATC	2 cut(s)	20, 691
NlaIII	CATG	4 cut(s)	297, 437, 567, 747
NlaIV	GGNNCC	1 cut(s)	407
NmuCI	GTSAC	3 cut(s)	632, 827, 836
NspI	RCATGY	1 cut(s)	747
PaeI	GCATGC	1 cut(s)	747
PfeI	GAWTC	3 cut(s)	75, 733, 823
PfoI	TCCNGGA	1 cut(s)	736
PkrI	GCNGC	3 cut(s)	209, 212, 496
Psp1406I	AACGTT	1 cut(s)	252
Psp6I	CCWGG	3 cut(s)	672, 736, 840
PspEI	GGTNACC	1 cut(s)	836
PspFI	CCCAGC	1 cut(s)	398
PspGI	CCWGG	3 cut(s)	672, 736, 840
PspN4I	GGNNCC	1 cut(s)	407
PspPI	GGNCC	2 cut(s)	430, 686
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	2 cut(s)	446, 621
RsaNI	GTAC	2 cut(s)	445, 620
RseI	CAYNNNNRTG	2 cut(s)	438, 843
SaqAI	TTAA	1 cut(s)	624
SatI	GCNGC	3 cut(s)	208, 211, 495
Sau3AI	GATC	2 cut(s)	20, 691
Sau96I	GGNCC	2 cut(s)	430, 686
ScrFI	CCNGG	3 cut(s)	674, 738, 842
SfaNI	GCATC	3 cut(s)	169, 647, 706
SfcI	CTRYAG	1 cut(s)	360
SinI	GGWCC	2 cut(s)	430, 686
SmiMI	CAYNNNNRTG	2 cut(s)	438, 843
SphI	GCATGC	1 cut(s)	747
Sse9I	AATT	4 cut(s)	62, 271, 415, 499
SsiI	CCGC	1 cut(s)	205
SspI	AATATT	1 cut(s)	284
StyD4I	CCNGG	3 cut(s)	672, 736, 840
StyI	CCWWGG	1 cut(s)	136
TaaI	ACNGT	5 cut(s)	133, 190, 467, 574, 852
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	1 cut(s)	387
TaqII	GACCGA	1 cut(s)	674
TasI	AATT	4 cut(s)	62, 271, 415, 499
TfiI	GAWTC	3 cut(s)	75, 733, 823
Tru1I	TTAA	1 cut(s)	624
Tru9I	TTAA	1 cut(s)	624
TscAI	CASTG	3 cut(s)	189, 470, 635
TseFI	GTSAC	3 cut(s)	632, 827, 836
TseI	GCWGC	3 cut(s)	207, 210, 494
Tsp45I	GTSAC	3 cut(s)	632, 827, 836
TspDTI	ATGAA	5 cut(s)	43, 282, 294, 450, 861
TspRI	CASTG	3 cut(s)	189, 470, 635
VpaK11BI	GGWCC	2 cut(s)	430, 686
XagI	CCTNNNNNAGG	1 cut(s)	219
XceI	RCATGY	1 cut(s)	747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.