Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0005830

Physical Location & Seq

Genomic Coordinates Reverse (-)

35860915 .. 35870430

Gene Structure 9516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG141200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGAGAATGTCCATATCCCGATTAAGCCTGTACTGTTTGTTTCTGCACCTCTTCATCCTTGGGATCTCGGCTATCAGGAAGGATGTGGGCTTTCTTCAGAAGCAGTTTTGCAGAAATACAGTTCAAGGAAGATACTTACTGTCTGATGATAATGGCCATGTCTGTGACGCACTGTCAGTAAATCCTCAGTCTCGCTGCTGCCCTGAAAAAGGAGACAAGTTCTCTTGTCATGGTTGCAATGTTGTCTCAGAGTGCTGTAATTCTTATGAGTATTGCGTTTCGTGTTGTCAAGATCCTTCAAGGATAATAAAGGAACAAGTACTGGAAGTGAAGATTGCCAAGCCAGCTTCTGCAGGGAAATATTCCAGTGTTTTTGATTTCTGTGCTGGAAGGTGCCGGCATAATTCTGAGAGTGTGGTTCACGAAAATGCTTACCGTAGTGATTTCCATCACTGTTTTTCTCTGCCTTCAAATTCTTCAGCTGTGAATTATACGTTTTTAGAAGCCAGACTGAATGGCATTAATGTTCTTGTTGGAAGGCAAGGTGAATCCTGCGACTTGGTTTGCAAATCAAAGGGACAGTCATGTGTTCCAAATAAGCTTTTGGTACTTAATCAGTGTGACATTATCCAGAGATATATGAGCTGCAAGGGAACTTGCCTGGCCAGTATTGGATCAGATCAACCTGCCGAAGTTGTCGATGACGCTCCTGAACATTTGAATCCTGGAGCATGCTTGTATACCCAAACACAATCCATGCTTTCTTGTTATGGTTCACATCAGCATACAAGGAGGCTTTGCCCTTGTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2054 Glyco_transf_18

Protein Analysis

270

Amino Acids

29.91

Weight (kDa)

7.94

Isoelectric Point (pI)

49.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPRING1	PF10218	33 - 153	2.8e-36	SREBP regulating gene protein
Glyco_transf_18	PF15024	172 - 269	3.3e-06	Glycosyltransferase family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59390 AT3G59390
fragaria_vesca	FvH4_4g10770 FvH4_4g10770 FvH4_4g10770 FvH4_4g10770
malus_domestica	MD04G1040100.v1.1
prunus_persica	Prupe.1G192800_v2.0.a1 Prupe.1G192800_v2.0.a1 Prupe.1G192800_v2.0.a1 Prupe.1G192800_v2.0.a1 Prupe.1G193700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0406391 RchiOBHm_Chr4g0406831
rosa_laevigata	RLG00000008753 RLG00000008755
rosa_multiflora	Rmu_sc0008087.1_g000003
rosa_roxburghii	Rroxscaffold_5G00351600
rosa_rugosa	Rorug04G0074200 Rorug04G0074300 Rorug04G0085000.1
rosa_samantha	Rh4AG141200 Rh4BG137600 Rh4CG147900 Rh4DG134900 Rh4DG135000
rosa_wichuraiana	Rw4G011470 Rw4G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	694
AccB1I	GGYRCC	1 cut(s)	393
AccI	GTMKAC	1 cut(s)	740
AclWI	GGATC	3 cut(s)	71, 287, 682
AcoI	YGGCCR	2 cut(s)	154, 663
AcsI	RAATTY	1 cut(s)	472
AcuI	CTGAAG	2 cut(s)	80, 462
AfaI	GTAC	3 cut(s)	32, 321, 609
AfiI	CCNNNNNNNGG	1 cut(s)	209
AgsI	TTSAA	4 cut(s)	125, 300, 471, 721
AhdI	GACNNNNNGTC	1 cut(s)	172
AjnI	CCWGG	2 cut(s)	660, 724
AluBI	AGCT	4 cut(s)	347, 482, 601, 645
AluI	AGCT	4 cut(s)	347, 482, 601, 645
Alw26I	GTCTC	3 cut(s)	195, 207, 250
AlwI	GGATC	3 cut(s)	71, 287, 682
AlwNI	CAGNNNCTG	1 cut(s)	350
AoxI	GGCC	2 cut(s)	154, 663
ApeKI	GCWGC	3 cut(s)	195, 198, 645
ApoI	RAATTY	1 cut(s)	472
ArsI	GACNNNNNNTTYG	2 cut(s)	566, 598
AseI	ATTAAT	1 cut(s)	522
AsuHPI	GGTGA	1 cut(s)	557
BalI	TGGCCA	2 cut(s)	156, 665
BanI	GGYRCC	1 cut(s)	393
BbvI	GCAGC	3 cut(s)	182, 185, 632
BccI	CCATC	1 cut(s)	456
BciT130I	CCWGG	2 cut(s)	662, 726
BcoDI	GTCTC	3 cut(s)	195, 207, 250
BfmI	CTRYAG	1 cut(s)	351
BfuAI	ACCTGC	1 cut(s)	694
BisI	GCNGC	3 cut(s)	196, 199, 646
BlsI	GCNGC	3 cut(s)	197, 200, 647
BmcAI	AGTACT	1 cut(s)	321
Bme1390I	CCNGG	2 cut(s)	662, 726
BmeRI	GACNNNNNGTC	1 cut(s)	172
BmiI	GGNNCC	1 cut(s)	395
BmrFI	CCNGG	2 cut(s)	662, 726
BpmI	CTGGAG	1 cut(s)	747
BsaBI	GATNNNNATC	1 cut(s)	447
BsaJI	CCNNGG	1 cut(s)	58
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse118I	RCCGGY	1 cut(s)	396
Bse1I	ACTGG	3 cut(s)	327, 366, 666
Bse3DI	GCAATG	1 cut(s)	244
Bse8I	GATNNNNATC	1 cut(s)	447
BseBI	CCWGG	2 cut(s)	662, 726
BseDI	CCNNGG	1 cut(s)	58
BseGI	GGATG	2 cut(s)	54, 88
BseJI	GATNNNNATC	1 cut(s)	447
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMI	GCAATG	1 cut(s)	244
BseMII	CTCAG	3 cut(s)	200, 261, 399
BseNI	ACTGG	3 cut(s)	327, 366, 666
BseXI	GCAGC	3 cut(s)	182, 185, 632
BsgI	GTGCAG	1 cut(s)	29
BshFI	GGCC	2 cut(s)	156, 665
BshNI	GGYRCC	1 cut(s)	393
BsiSI	CCGG	1 cut(s)	397
BslFI	GGGAC	1 cut(s)	591
BslI	CCNNNNNNNGG	1 cut(s)	209
BsmAI	GTCTC	3 cut(s)	195, 207, 250
BsmFI	GGGAC	1 cut(s)	591
BsnI	GGCC	2 cut(s)	156, 665
Bsp143I	GATC	4 cut(s)	63, 292, 674, 679
BspANI	GGCC	2 cut(s)	156, 665
BspCNI	CTCAG	3 cut(s)	199, 260, 400
BspLI	GGNNCC	1 cut(s)	395
BspMAI	CTGCAG	1 cut(s)	355
BspMI	ACCTGC	1 cut(s)	694
BspPI	GGATC	3 cut(s)	71, 287, 682
BspT107I	GGYRCC	1 cut(s)	393
BsrDI	GCAATG	1 cut(s)	244
BsrFI	RCCGGY	1 cut(s)	396
BsrI	ACTGG	3 cut(s)	327, 366, 666
BssAI	RCCGGY	1 cut(s)	396
BssECI	CCNNGG	1 cut(s)	58
BssMI	GATC	4 cut(s)	63, 292, 674, 679
BssNAI	GTATAC	1 cut(s)	741
BssT1I	CCWWGG	1 cut(s)	58
Bst1107I	GTATAC	1 cut(s)	741
Bst2UI	CCWGG	2 cut(s)	662, 726
Bst4CI	ACNGT	7 cut(s)	35, 121, 141, 174, 437, 455, 582
Bst6I	CTCTTC	1 cut(s)	56
BstC8I	GCNNGC	3 cut(s)	345, 398, 733
BstDEI	CTNAG	3 cut(s)	186, 247, 408
BstENI	CCTNNNNNAGG	1 cut(s)	207
BstF5I	GGATG	2 cut(s)	54, 88
BstKTI	GATC	4 cut(s)	66, 295, 677, 682
BstMAI	GTCTC	3 cut(s)	195, 207, 250
BstMBI	GATC	4 cut(s)	63, 292, 674, 679
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNI	CCWGG	2 cut(s)	662, 726
BstNSI	RCATGY	1 cut(s)	735
BstSCI	CCNGG	2 cut(s)	660, 724
BstSFI	CTRYAG	1 cut(s)	351
BstV1I	GCAGC	3 cut(s)	182, 185, 632
BstX2I	RGATCY	2 cut(s)	63, 292
BstYI	RGATCY	2 cut(s)	63, 292
BstZ17I	GTATAC	1 cut(s)	741
BsuRI	GGCC	2 cut(s)	156, 665
BtsCI	GGATG	2 cut(s)	54, 88
BtsIMutI	CAGTG	4 cut(s)	170, 373, 451, 623
BveI	ACCTGC	1 cut(s)	694
Cac8I	GCNNGC	3 cut(s)	345, 398, 733
CaiI	CAGNNNCTG	1 cut(s)	350
Cfr10I	RCCGGY	1 cut(s)	396
CseI	GACGC	2 cut(s)	176, 713
Csp6I	GTAC	3 cut(s)	31, 320, 608
CviAII	CATG	5 cut(s)	158, 230, 585, 732, 757
CviQI	GTAC	3 cut(s)	31, 320, 608
DdeI	CTNAG	3 cut(s)	186, 247, 408
DpnI	GATC	4 cut(s)	65, 294, 676, 681
DpnII	GATC	4 cut(s)	63, 292, 674, 679
DriI	GACNNNNNGTC	1 cut(s)	172
EaeI	YGGCCR	2 cut(s)	154, 663
Eam1104I	CTCTTC	1 cut(s)	56
Eam1105I	GACNNNNNGTC	1 cut(s)	172
EarI	CTCTTC	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	58
Eco57I	CTGAAG	2 cut(s)	80, 462
EcoNI	CCTNNNNNAGG	1 cut(s)	207
EcoRII	CCWGG	2 cut(s)	660, 724
EcoT14I	CCWWGG	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	58
FaeI	CATG	5 cut(s)	161, 233, 588, 735, 760
FaqI	GGGAC	1 cut(s)	591
FatI	CATG	5 cut(s)	157, 229, 584, 731, 756
FblI	GTMKAC	1 cut(s)	740
Fnu4HI	GCNGC	3 cut(s)	196, 199, 646
FokI	GGATG	2 cut(s)	41, 95
Fsp4HI	GCNGC	3 cut(s)	196, 199, 646
GluI	GCNGC	3 cut(s)	196, 199, 646
GsuI	CTGGAG	1 cut(s)	747
HaeIII	GGCC	2 cut(s)	156, 665
HapII	CCGG	1 cut(s)	397
HgaI	GACGC	2 cut(s)	176, 713
Hin1II	CATG	5 cut(s)	161, 233, 588, 735, 760
HindIII	AAGCTT	1 cut(s)	599
HinfI	GANTC	2 cut(s)	548, 721
HpaII	CCGG	1 cut(s)	397
HphI	GGTGA	1 cut(s)	557
Hpy166II	GTNNAC	3 cut(s)	421, 741, 776
Hpy188I	TCNGA	5 cut(s)	99, 145, 250, 409, 679
Hpy188III	TCNNGA	6 cut(s)	18, 76, 290, 422, 631, 710
Hpy8I	GTNNAC	3 cut(s)	421, 741, 776
HpyAV	CCTTC	5 cut(s)	73, 306, 384, 477, 531
HpyCH4III	ACNGT	7 cut(s)	35, 121, 141, 174, 437, 455, 582
HpyCH4IV	ACGT	1 cut(s)	494
HpyCH4V	TGCA	7 cut(s)	46, 111, 237, 353, 567, 648, 809
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	3 cut(s)	186, 247, 408
HpySE526I	ACGT	1 cut(s)	494
Hsp92II	CATG	5 cut(s)	161, 233, 588, 735, 760
KroI	GCCGGC	1 cut(s)	396
KroNI	GCCGGC	1 cut(s)	398
Kzo9I	GATC	4 cut(s)	63, 292, 674, 679
LmnI	GCTCC	2 cut(s)	712, 728
Lsp1109I	GCAGC	3 cut(s)	182, 185, 632
MaeII	ACGT	1 cut(s)	494
MaeIII	GTNAC	2 cut(s)	164, 620
MalI	GATC	4 cut(s)	65, 294, 676, 681
MboI	GATC	4 cut(s)	63, 292, 674, 679
MboII	GAAGA	5 cut(s)	43, 86, 141, 343, 468
MflI	RGATCY	2 cut(s)	63, 292
MlsI	TGGCCA	2 cut(s)	156, 665
MluCI	AATT	4 cut(s)	259, 403, 472, 487
MluNI	TGGCCA	2 cut(s)	156, 665
MmeI	TCCRAC	1 cut(s)	514
MnlI	CCTC	3 cut(s)	59, 195, 786
Mox20I	TGGCCA	2 cut(s)	156, 665
MroNI	GCCGGC	1 cut(s)	396
MscI	TGGCCA	2 cut(s)	156, 665
MseI	TTAA	3 cut(s)	23, 522, 612
MslI	CAYNNNNRTG	2 cut(s)	162, 426
Msp20I	TGGCCA	2 cut(s)	156, 665
MspA1I	CMGCKG	1 cut(s)	482
MspI	CCGG	1 cut(s)	397
MspR9I	CCNGG	2 cut(s)	662, 726
MvaI	CCWGG	2 cut(s)	662, 726
MwoI	GCNNNNNNNGC	1 cut(s)	344
NaeI	GCCGGC	1 cut(s)	398
NdeII	GATC	4 cut(s)	63, 292, 674, 679
NgoMIV	GCCGGC	1 cut(s)	396
NlaIII	CATG	5 cut(s)	161, 233, 588, 735, 760
NlaIV	GGNNCC	1 cut(s)	395
NmeAIII	GCCGAG	1 cut(s)	47
NmuCI	GTSAC	2 cut(s)	164, 620
NspI	RCATGY	1 cut(s)	735
PaeI	GCATGC	1 cut(s)	735
PdiI	GCCGGC	1 cut(s)	398
PfeI	GAWTC	2 cut(s)	548, 721
PfoI	TCCNGGA	1 cut(s)	724
PkrI	GCNGC	3 cut(s)	197, 200, 647
PshBI	ATTAAT	1 cut(s)	522
Psp6I	CCWGG	2 cut(s)	660, 724
PspGI	CCWGG	2 cut(s)	660, 724
PspN4I	GGNNCC	1 cut(s)	395
PstI	CTGCAG	1 cut(s)	355
PstNI	CAGNNNCTG	1 cut(s)	350
PsuI	RGATCY	2 cut(s)	63, 292
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	3 cut(s)	32, 321, 609
RsaNI	GTAC	3 cut(s)	31, 320, 608
RseI	CAYNNNNRTG	2 cut(s)	162, 426
SaqAI	TTAA	3 cut(s)	23, 522, 612
SatI	GCNGC	3 cut(s)	196, 199, 646
Sau3AI	GATC	4 cut(s)	63, 292, 674, 679
ScaI	AGTACT	1 cut(s)	321
ScrFI	CCNGG	2 cut(s)	662, 726
SetI	ASST	9 cut(s)	51, 349, 395, 484, 497, 547, 603, 647, 688
SfcI	CTRYAG	1 cut(s)	351
SmiMI	CAYNNNNRTG	2 cut(s)	162, 426
SphI	GCATGC	1 cut(s)	735
Sse9I	AATT	4 cut(s)	259, 403, 472, 487
SspI	AATATT	1 cut(s)	362
StyD4I	CCNGG	2 cut(s)	660, 724
StyI	CCWWGG	1 cut(s)	58
TaaI	ACNGT	7 cut(s)	35, 121, 141, 174, 437, 455, 582
TaiI	ACGT	1 cut(s)	497
TaqI	TCGA	1 cut(s)	699
TasI	AATT	4 cut(s)	259, 403, 472, 487
TatI	WGTACW	2 cut(s)	30, 319
TfiI	GAWTC	2 cut(s)	548, 721
Tru1I	TTAA	3 cut(s)	23, 522, 612
Tru9I	TTAA	3 cut(s)	23, 522, 612
TscAI	CASTG	4 cut(s)	177, 373, 458, 623
TseFI	GTSAC	2 cut(s)	164, 620
TseI	GCWGC	3 cut(s)	195, 198, 645
Tsp45I	GTSAC	2 cut(s)	164, 620
TspDTI	ATGAA	1 cut(s)	43
TspRI	CASTG	4 cut(s)	177, 373, 458, 623
VspI	ATTAAT	1 cut(s)	522
XagI	CCTNNNNNAGG	1 cut(s)	207
XapI	RAATTY	1 cut(s)	472
XceI	RCATGY	1 cut(s)	735
XmiI	GTMKAC	1 cut(s)	740
ZrmI	AGTACT	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.