FvH4_4g13451

Pre-mRNA-splicing factor cwc25

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
17058956 .. 17062314
3359 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13451.t1

Sequence Viewer

Length: 1857 bp
ATGGGGATGAAATTTCTGAACAAGAAGGGATGGCACACGGGGAGCCTCCGCAACATCGAGAACGTCTGGAAGGCCGAGCAGAAGCACGCCGCCGAAGAGAAGAAGCTCGACGAGCTCCGCAAGCAGATCGTCGAAGAACGCGAACGCTCCGAGTTCCGCGAGCTCCAGGAGCAAGCCGGCCTCGTCCCCAAGCAAGAGAGATTGGAGTTCCTCTACGATTCCGGATTGGCCGTGGGGCGCCCCGGCGGCTCTGATTCTCTCAAGGAAGCCTTCACCAAAGCCGAAGAGCCTTCTTCCTCCGCTGCTGCCGCCGCGAAGGAGGCATCAGCATCTGCGCCGGGGGCTCTGTTTGCGGCAGAGAAGCCTCAGTCTGCCAATGATGCTTGGAGGAAGCTTCACTCGGATCCTCTGCTTATGATTAAGCAGCGAGAGCAGGAGGCCCTTGCTCGGATCAAGAACAATCCTGTCCAGATGGCTATGATTCGTAAACAAGTTGAAACAAAGAAGCCCAAAGATAAAGAGCGTGACAAGAAGGAACATCGGAAGAAGCACCGTAAAGAATCTTCAAAACATCAGAAGCAAACGTCTGATTCAGAAGATGACACAGCTGATATGGAAAGGAGGAAGAATAGTCAGCGTAAGGCATCAAAATATGTTAAGCATTCAGAATTAGAGGATGAACCTCATGAAATAGCACATCGAAGTGAAAAGAACCGTGTTAAGCAGTCAAATGTTGAAGATGAATCACGTCATAGAGCACGTGAAAGTGGGAAAACCCAGGCCAAGTATTCAGATTCTGAAGATGAATTGCGTAACAAAGAACGTGGTCGTGGTAACCATGTCAGGCATTCAGATTGGGAAGATGCATCACATAACAGAGCACATCGAAGTGAGAAAAAGTATTCAGATGAGCTAAATAACAGAGGACATCGAAGTGAGAAGAACCGTATTAAGCATGCAGATTCAGAAGACAAGCTACATAACACAGGTCGAAGTGAGAACAACCGTGGTAAGCGTTCAGATGTAGAAGATGTGCTACATAACAGAAGAAGTCAAAGTGAGAACAACCGTGGTAAGCGTTCAGATGTAGAAGATGTGCTACATAACAGAAGAAGTCGAAGTGAGAAAAACCGTGGTAAGCATTCAGATTCTGAGGATGAGCTACATAACAGAAGAAGTGATAAAAACCGTGGTAAGCATTCAGATTCTGAAGATAAGCTTCATAACAGAAGAAGTCGAAGTGAGAAAAACCGTGGTAAGCATTCAGATTCAGAAGATGAGCTACATAACAGAAGAAGTCGAAGTGAGAAAAACCCTGGTAAGCATTCAGATTCAGAAGATGAGCTACATAACCAAAGAAGTCGAAGTGAGAAGAACGGTGTCAAGCATTTAGATTCAGATGATGGGCTACATAAAAGAGCACCTTCTATTGAGAATAATCATGCTATAGAAAGGGCAAAAGATGACGGTCAAGGTATGGTCAAGGGAAAGCATGAAAGTTCAGAACAAGCGAACTCTTCCATTAGAGGCCAAAATGACACCCACAACAGGCGCCGATTTGTTCCTCCTAAACTTTCAGAAGAAGAAAGAGCTGCTCGGCTAAAGGAGATGCAGATAGATGCTGAGTTCCATGAAGAACAAAGATGGAAACGTTTGAAGAAGGCTGACGAGAAAGATGCACGGGAAGCTACCCAGGCTATCAGATCTGGCGGCAAGAATTTCTTGGATGCTGTTCAAACTAGTGTATATGGTTCTGGGAAGGGGGGAAGCTCAACGATAGAGGAGAGTGTCCGTCGCCGAACACATTATTCTCAGGGCAGGTCTGAAGCAGGTGAAAGCAATGCATTTCGACGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

619

Amino Acids

71.42

Weight (kDa)

9.6

Isoelectric Point (pI)

74.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cir_N PF10197 11 - 46 5.9e-14 N-terminal domain of CBF1 interacting co-repressor CIR
CWC25 PF12542 64 - 155 1.2e-14 Pre-mRNA splicing factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1820
Acc36I ACCTGC 2 cut(s) 1809, 1820
AccB1I GGYRCC 2 cut(s) 237, 1551
AccII CGCG 3 cut(s) 141, 159, 314
AccIII TCCGGA 1 cut(s) 221
AclI AACGTT 1 cut(s) 1651
AclWI GGATC 3 cut(s) 398, 411, 458
AcoI YGGCCR 1 cut(s) 228
AcsI RAATTY 2 cut(s) 11, 1717
AcuI CTGAAG 3 cut(s) 819, 1230, 1845
AcvI CACGTG 1 cut(s) 761
AcyI GRCGYC 2 cut(s) 238, 1552
AfiI CCNNNNNNNGG 2 cut(s) 447, 1548
AgsI TTSAA 5 cut(s) 497, 567, 737, 1657, 1736
AhlI ACTAGT 1 cut(s) 1739
AjiI CACGTC 1 cut(s) 749
AjnI CCWGG 4 cut(s) 165, 777, 1315, 1692
Alw21I GWGCWC 5 cut(s) 117, 165, 760, 883, 1423
AlwI GGATC 3 cut(s) 398, 411, 458
AlwNI CAGNNNCTG 4 cut(s) 332, 797, 1151, 1208
Aor13HI TCCGGA 1 cut(s) 221
AoxI GGCC 6 cut(s) 72, 178, 228, 438, 780, 1528
ApeKI GCWGC 4 cut(s) 302, 305, 424, 1592
ApoI RAATTY 2 cut(s) 11, 1717
AspLEI GCGC 3 cut(s) 240, 337, 1554
AspS9I GGNCC 1 cut(s) 439
AsuC2I CCSGG 2 cut(s) 243, 339
AsuHPI GGTGA 2 cut(s) 265, 1844
BamHI GGATCC 1 cut(s) 403
BanI GGYRCC 2 cut(s) 237, 1551
BanII GRGCYC 3 cut(s) 117, 165, 346
BbrPI CACGTG 1 cut(s) 761
BbsI GAAGAC 1 cut(s) 975
Bbv12I GWGCWC 5 cut(s) 117, 165, 760, 883, 1423
BbvI GCAGC 4 cut(s) 289, 292, 436, 1579
BccI CCATC 4 cut(s) 24, 466, 1397, 1638
BceAI ACGGC 1 cut(s) 215
BcgI CGANNNNNNTGC 4 cut(s) 109, 143, 1658, 1692
BciT130I CCWGG 4 cut(s) 167, 779, 1317, 1694
BcnI CCSGG 2 cut(s) 243, 339
BcuI ACTAGT 1 cut(s) 1739
BfaI CTAG 1 cut(s) 1740
BfmI CTRYAG 1 cut(s) 1446
BfoI RGCGCY 2 cut(s) 241, 1555
BfuAI ACCTGC 2 cut(s) 1809, 1820
BglI GCCNNNNNGGC 1 cut(s) 246
BglII AGATCT 1 cut(s) 1703
Bme1390I CCNGG 6 cut(s) 167, 243, 339, 779, 1317, 1694
BmgBI CACGTC 1 cut(s) 749
BmgT120I GGNCC 1 cut(s) 439
BmiI GGNNCC 4 cut(s) 44, 239, 405, 1553
BmrFI CCNGG 6 cut(s) 167, 243, 339, 779, 1317, 1694
BpiI GAAGAC 1 cut(s) 975
BpmI CTGGAG 1 cut(s) 149
BpuEI CTTGAG 1 cut(s) 245
BpuMI CCSGG 2 cut(s) 243, 339
BsaAI YACGTR 1 cut(s) 761
BsaHI GRCGYC 2 cut(s) 238, 1552
BsaWI WCCGGW 1 cut(s) 221
Bsc4I CCNNNNNNNGG 2 cut(s) 447, 1548
Bse118I RCCGGY 1 cut(s) 176
Bse3DI GCAATG 1 cut(s) 1846
BseAI TCCGGA 1 cut(s) 221
BseBI CCWGG 4 cut(s) 167, 779, 1317, 1694
BseGI GGATG 5 cut(s) 12, 35, 682, 1162, 1732
BseLI CCNNNNNNNGG 2 cut(s) 447, 1548
BseMI GCAATG 1 cut(s) 1846
BseMII CTCAG 4 cut(s) 380, 1143, 1614, 1826
BseRI GAGGAG 1 cut(s) 1796
BseXI GCAGC 4 cut(s) 289, 292, 436, 1579
Bsh1236I CGCG 3 cut(s) 141, 159, 314
BshFI GGCC 6 cut(s) 74, 180, 230, 440, 782, 1530
BshNI GGYRCC 2 cut(s) 237, 1551
BsiHKAI GWGCWC 5 cut(s) 117, 165, 760, 883, 1423
BsiSI CCGG 4 cut(s) 177, 222, 243, 338
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 2 cut(s) 447, 1548
BsmFI GGGAC 1 cut(s) 170
BsmI GAATGC 6 cut(s) 661, 847, 1141, 1198, 1261, 1324
BsnI GGCC 6 cut(s) 74, 180, 230, 440, 782, 1530
Bsp1286I GDGCHC 6 cut(s) 117, 165, 346, 760, 883, 1423
Bsp13I TCCGGA 1 cut(s) 221
Bsp143I GATC 4 cut(s) 126, 403, 450, 1703
BspANI GGCC 6 cut(s) 74, 180, 230, 440, 782, 1530
BspCNI CTCAG 4 cut(s) 379, 1144, 1615, 1825
BspEI TCCGGA 1 cut(s) 221
BspFNI CGCG 3 cut(s) 141, 159, 314
BspHI TCATGA 1 cut(s) 685
BspLI GGNNCC 4 cut(s) 44, 239, 405, 1553
BspMI ACCTGC 2 cut(s) 1809, 1820
BspPI GGATC 3 cut(s) 398, 411, 458
BspQI GCTCTTC 1 cut(s) 279
BspT107I GGYRCC 2 cut(s) 237, 1551
BsrDI GCAATG 1 cut(s) 1846
BsrFI RCCGGY 1 cut(s) 176
BssAI RCCGGY 1 cut(s) 176
BssMI GATC 4 cut(s) 126, 403, 450, 1703
BssNI GRCGYC 2 cut(s) 238, 1552
Bst2UI CCWGG 4 cut(s) 167, 779, 1317, 1694
Bst6I CTCTTC 3 cut(s) 90, 279, 1522
BstACI GRCGYC 2 cut(s) 238, 1552
BstBAI YACGTR 1 cut(s) 761
BstC8I GCNNGC 6 cut(s) 87, 122, 161, 174, 178, 957
BstDEI CTNAG 4 cut(s) 366, 1152, 1623, 1812
BstDSI CCRYGG 6 cut(s) 231, 1006, 1069, 1132, 1189, 1252
BstEII GGTNACC 1 cut(s) 833
BstF5I GGATG 5 cut(s) 12, 35, 682, 1162, 1732
BstFNI CGCG 3 cut(s) 141, 159, 314
BstH2I RGCGCY 2 cut(s) 241, 1555
BstHHI GCGC 3 cut(s) 240, 337, 1554
BstKTI GATC 4 cut(s) 129, 406, 453, 1706
BstMBI GATC 4 cut(s) 126, 403, 450, 1703
BstNI CCWGG 4 cut(s) 167, 779, 1317, 1694
BstNSI RCATGY 1 cut(s) 959
BstPI GGTNACC 1 cut(s) 833
BstSCI CCNGG 6 cut(s) 165, 241, 337, 777, 1315, 1692
BstSFI CTRYAG 1 cut(s) 1446
BstUI CGCG 3 cut(s) 141, 159, 314
BstV1I GCAGC 4 cut(s) 289, 292, 436, 1579
BstV2I GAAGAC 1 cut(s) 975
BstX2I RGATCY 2 cut(s) 403, 1703
BstYI RGATCY 2 cut(s) 403, 1703
BsuRI GGCC 6 cut(s) 74, 180, 230, 440, 782, 1530
BtgI CCRYGG 6 cut(s) 231, 1006, 1069, 1132, 1189, 1252
BtrI CACGTC 1 cut(s) 749
BtsCI GGATG 5 cut(s) 12, 35, 682, 1162, 1732
BveI ACCTGC 2 cut(s) 1809, 1820
Cac8I GCNNGC 6 cut(s) 87, 122, 161, 174, 178, 957
CaiI CAGNNNCTG 4 cut(s) 332, 797, 1151, 1208
CciI TCATGA 1 cut(s) 685
CfoI GCGC 3 cut(s) 240, 337, 1554
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 439
CspCI CAANNNNNGTGG 2 cut(s) 805, 840
CviAII CATG 6 cut(s) 686, 839, 956, 1442, 1493, 1631
DdeI CTNAG 4 cut(s) 366, 1152, 1623, 1812
DinI GGCGCC 2 cut(s) 239, 1553
DpnI GATC 4 cut(s) 128, 405, 452, 1705
DpnII GATC 4 cut(s) 126, 403, 450, 1703
EaeI YGGCCR 1 cut(s) 228
Eam1104I CTCTTC 3 cut(s) 90, 279, 1522
EarI CTCTTC 3 cut(s) 90, 279, 1522
Ecl136II GAGCTC 2 cut(s) 115, 163
Eco24I GRGCYC 3 cut(s) 117, 165, 346
Eco53kI GAGCTC 2 cut(s) 115, 163
Eco57I CTGAAG 3 cut(s) 819, 1230, 1845
Eco72I CACGTG 1 cut(s) 761
Eco91I GGTNACC 1 cut(s) 833
EcoICRI GAGCTC 2 cut(s) 115, 163
EcoO109I RGGNCCY 1 cut(s) 439
EcoO65I GGTNACC 1 cut(s) 833
EcoRII CCWGG 4 cut(s) 165, 777, 1315, 1692
EcoT22I ATGCAT 2 cut(s) 868, 1846
EcoT38I GRGCYC 3 cut(s) 117, 165, 346
EgeI GGCGCC 2 cut(s) 239, 1553
EheI GGCGCC 2 cut(s) 239, 1553
FaeI CATG 6 cut(s) 689, 842, 959, 1445, 1496, 1634
FalI AAGNNNNNCTT 8 cut(s) 254, 286, 1203, 1235, 1408, 1440, 1706, 1738
FaqI GGGAC 1 cut(s) 170
FatI CATG 6 cut(s) 685, 838, 955, 1441, 1492, 1630
FokI GGATG 5 cut(s) 19, 42, 689, 1169, 1739
FriOI GRGCYC 3 cut(s) 117, 165, 346
FspBI CTAG 1 cut(s) 1740
GlaI GCGC 3 cut(s) 239, 336, 1553
GsuI CTGGAG 1 cut(s) 149
HaeII RGCGCY 2 cut(s) 241, 1555
HaeIII GGCC 6 cut(s) 74, 180, 230, 440, 782, 1530
HapII CCGG 4 cut(s) 177, 222, 243, 338
HhaI GCGC 3 cut(s) 240, 337, 1554
Hin1I GRCGYC 2 cut(s) 238, 1552
Hin1II CATG 6 cut(s) 689, 842, 959, 1445, 1496, 1634
Hin6I GCGC 3 cut(s) 238, 335, 1552
HinP1I GCGC 3 cut(s) 238, 335, 1552
HindIII AAGCTT 2 cut(s) 392, 1217
HpaII CCGG 4 cut(s) 177, 222, 243, 338
HphI GGTGA 2 cut(s) 265, 1844
Hpy166II GTNNAC 1 cut(s) 488
Hpy188III TCNNGA 6 cut(s) 58, 67, 222, 454, 469, 686
Hpy8I GTNNAC 1 cut(s) 488
Hpy99I CGWCG 4 cut(s) 113, 134, 1797, 1854
HpyAV CCTTC 9 cut(s) 19, 64, 280, 300, 310, 526, 1434, 1654, 1753
HpyCH4IV ACGT 6 cut(s) 63, 584, 748, 760, 823, 1651
HpyCH4V TGCA 5 cut(s) 866, 959, 1612, 1679, 1844
HpyF3I CTNAG 4 cut(s) 366, 1152, 1623, 1812
HpySE526I ACGT 6 cut(s) 63, 584, 748, 760, 823, 1651
Hsp92I GRCGYC 2 cut(s) 238, 1552
Hsp92II CATG 6 cut(s) 689, 842, 959, 1445, 1496, 1634
HspAI GCGC 3 cut(s) 238, 335, 1552
KasI GGCGCC 2 cut(s) 237, 1551
Kpn2I TCCGGA 1 cut(s) 221
KroI GCCGGC 1 cut(s) 176
KroNI GCCGGC 1 cut(s) 178
Kzo9I GATC 4 cut(s) 126, 403, 450, 1703
LguI GCTCTTC 1 cut(s) 279
LmnI GCTCC 5 cut(s) 42, 120, 152, 168, 169
Lsp1109I GCAGC 4 cut(s) 289, 292, 436, 1579
MaeI CTAG 1 cut(s) 1740
MaeII ACGT 6 cut(s) 63, 584, 748, 760, 823, 1651
MaeIII GTNAC 3 cut(s) 524, 812, 833
MalI GATC 4 cut(s) 128, 405, 452, 1705
MboI GATC 4 cut(s) 126, 403, 450, 1703
MflI RGATCY 2 cut(s) 403, 1703
MhlI GDGCHC 6 cut(s) 117, 165, 346, 760, 883, 1423
MluCI AATT 4 cut(s) 11, 668, 806, 1717
Mly113I GGCGCC 2 cut(s) 238, 1552
Mph1103I ATGCAT 2 cut(s) 868, 1846
MroI TCCGGA 1 cut(s) 221
MroNI GCCGGC 1 cut(s) 176
MseI TTAA 4 cut(s) 420, 657, 720, 951
MslI CAYNNNNRTG 3 cut(s) 702, 888, 933
MspA1I CMGCKG 2 cut(s) 302, 608
MspI CCGG 4 cut(s) 177, 222, 243, 338
MspR9I CCNGG 6 cut(s) 167, 243, 339, 779, 1317, 1694
Mva1269I GAATGC 6 cut(s) 661, 847, 1141, 1198, 1261, 1324
MvaI CCWGG 4 cut(s) 167, 779, 1317, 1694
MvnI CGCG 3 cut(s) 141, 159, 314
NaeI GCCGGC 1 cut(s) 178
NarI GGCGCC 2 cut(s) 238, 1552
NciI CCSGG 2 cut(s) 243, 339
NdeII GATC 4 cut(s) 126, 403, 450, 1703
NgoMIV GCCGGC 1 cut(s) 176
NlaIII CATG 6 cut(s) 689, 842, 959, 1445, 1496, 1634
NlaIV GGNNCC 4 cut(s) 44, 239, 405, 1553
NmeAIII GCCGAG 2 cut(s) 100, 1576
NmuCI GTSAC 1 cut(s) 524
NsiI ATGCAT 2 cut(s) 868, 1846
NspI RCATGY 1 cut(s) 959
PaeI GCATGC 1 cut(s) 959
PagI TCATGA 1 cut(s) 685
PaqCI CACCTGC 1 cut(s) 1820
PciSI GCTCTTC 1 cut(s) 279
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PctI GAATGC 6 cut(s) 661, 847, 1141, 1198, 1261, 1324
PdiI GCCGGC 1 cut(s) 178
PfoI TCCNGGA 1 cut(s) 165
PluTI GGCGCC 2 cut(s) 241, 1555
PmaCI CACGTG 1 cut(s) 761
PmlI CACGTG 1 cut(s) 761
Ppu21I YACGTR 1 cut(s) 761
Psp124BI GAGCTC 2 cut(s) 117, 165
Psp1406I AACGTT 1 cut(s) 1651
Psp6I CCWGG 4 cut(s) 165, 777, 1315, 1692
PspCI CACGTG 1 cut(s) 761
PspEI GGTNACC 1 cut(s) 833
PspGI CCWGG 4 cut(s) 165, 777, 1315, 1692
PspN4I GGNNCC 4 cut(s) 44, 239, 405, 1553
PspPI GGNCC 1 cut(s) 439
PstNI CAGNNNCTG 4 cut(s) 332, 797, 1151, 1208
PsuI RGATCY 2 cut(s) 403, 1703
PvuII CAGCTG 1 cut(s) 608
RseI CAYNNNNRTG 3 cut(s) 702, 888, 933
SacI GAGCTC 2 cut(s) 117, 165
SapI GCTCTTC 1 cut(s) 279
SaqAI TTAA 4 cut(s) 420, 657, 720, 951
Sau3AI GATC 4 cut(s) 126, 403, 450, 1703
Sau96I GGNCC 1 cut(s) 439
ScrFI CCNGG 6 cut(s) 167, 243, 339, 779, 1317, 1694
SduI GDGCHC 6 cut(s) 117, 165, 346, 760, 883, 1423
SfcI CTRYAG 1 cut(s) 1446
SfoI GGCGCC 2 cut(s) 239, 1553
SmiMI CAYNNNNRTG 3 cut(s) 702, 888, 933
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
SpeI ACTAGT 1 cut(s) 1739
SphI GCATGC 1 cut(s) 959
Sse9I AATT 4 cut(s) 11, 668, 806, 1717
SspDI GGCGCC 2 cut(s) 237, 1551
SspMI CTAG 1 cut(s) 1740
SstI GAGCTC 2 cut(s) 117, 165
StyD4I CCNGG 6 cut(s) 165, 241, 337, 777, 1315, 1692
TaiI ACGT 6 cut(s) 66, 587, 751, 763, 826, 1654
TasI AATT 4 cut(s) 11, 668, 806, 1717
TauI GCSGC 6 cut(s) 92, 249, 311, 314, 356, 1713
Tru1I TTAA 4 cut(s) 420, 657, 720, 951
Tru9I TTAA 4 cut(s) 420, 657, 720, 951
TseFI GTSAC 1 cut(s) 524
TseI GCWGC 4 cut(s) 302, 305, 424, 1592
Tsp45I GTSAC 1 cut(s) 524
TspDTI ATGAA 8 cut(s) 23, 693, 702, 756, 819, 1211, 1509, 1647
TspGWI ACGGA 1 cut(s) 1781
XapI RAATTY 2 cut(s) 11, 1717
XceI RCATGY 1 cut(s) 959
XspI CTAG 1 cut(s) 1740
Zsp2I ATGCAT 2 cut(s) 868, 1846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.