Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006065

Physical Location & Seq

Genomic Coordinates Forward (+)

32119028 .. 32122146

Gene Structure 3119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG183000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGATTAGGCAGCGAGAGCAGGAAGCCCTCTCTCGGATTAAGAACAATCCTGTCCAGATGGCTATGATTCGCAAACAAGTTGAAGCAAAGAAGCCCAAAGAAAAAGAGCTTGACAAGAAGGAACGTCGGAAGAAACACCGTAAAGATTCTTCAAAGCATCGGAAGCAAACATCTGATTCAGAAGATGACACAGCTGATATGGAAAGGAGGAAGAATAGTCATCGTAAGGCATCAAAATATGTTAAGCATTCAGAATCAGAGGATGAACCCCATGAAAAAGCGCATCAAAGTGAGAAGAACCATGTTAAGCAGTCAAATGTTGAAGATGAATCACGTTATAGAGCACGCCAAAGTGGGAAAACCCATGCCAAGTATTCAGATTCTGAAGATGAATTGCGTAGCAAAGCACGTAGCAGTGATAAAAATCATGTTAGGCATTCAGATTTGGAGGATACATCACGTAACAGATCACATCGTAGTGAGAAGAACCGTGTTAAGCATTCAGATTCAGAAGACAAGCTACACAACAGAGGTCGAAGTGAGAACAACCGTGGTAAGCATTCAGATTCAGAAGATGAGCTACATAACAGAAGAAGTCGAAGTGAGAGAAACCGTGGAAAGCATTCAGATTCAGAAGATGAACTACATAACAGAAGAAGTCGAGGGGAGAAGAACCGTGTCAAGCATTCAGATTCAGAAGACAGGCTACATAACAGAGCACGTCGAAGTGAGAAAGATGATGCTATAACAAGGGGAAAAGAGGACGGTCAAGGTATTGTCAAGGGAAAACATGAAAATTCAGAACAAGAAAACTATTCCATGAGAGGTCGAAATGAATCCCACAACAAGCGTCGGTTTGTTCCGCCTAAACTTTCAGAAGAAGAAAGAGCTGCTCGGTTAAAGGAGATGCAGATGGATGCTGAGTTGCATGAAGAACAAAGATGGAAACGTTTGAAGAAGGCTGATGAGAATGATGCACGGGAAGCTACCCAGGCTATCAGATCTGGTGGTAAGAATTTCTTGGATGCTGTTAAAACTAGTGTTTATGGTTCTGGGAAGGGAGGAAGCTCAACAATAGAGGAGAGTGTCCGTCGCCGAACACATTATTTGCAGGGCAGGTCTGAAGCAGGTGAAAGCAATGCATTTCGACGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CWC25 Cir_N

Protein Analysis

384

Amino Acids

45.15

Weight (kDa)

9.88

Isoelectric Point (pI)

75.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44195 AT2G44200
fragaria_vesca	FvH4_4g13451
malus_domestica	MD04G1014200.v1.1
prunus_persica	Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161500_v2.0.a1 Prupe.1G161500_v2.0.a1 Prupe.1G161500_v2.0.a1 Prupe.1G162300_v2.0.a1
pyrus_communis	pycom04g01100
rosa_chinensis	RchiOBHm_Chr4g0414011
rosa_laevigata	RLG00000008185
rosa_multiflora	Rmu_sc0003264.1_g000022 Rmu_sc0006428.1_g000008
rosa_roxburghii	Rroxscaffold_5G00357930
rosa_rugosa	Rorug04G0125000
rosa_samantha	Rh4AG183500 Rh4BG183000 Rh4CG195500 Rh4DG178800
rosa_wichuraiana	Rw4G015600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1118
Acc36I	ACCTGC	2 cut(s)	1107, 1118
AciI	CCGC	1 cut(s)	863
AclI	AACGTT	1 cut(s)	949
AcsI	RAATTY	2 cut(s)	796, 1015
AcuI	CTGAAG	2 cut(s)	405, 1143
AfiI	CCNNNNNNNGG	1 cut(s)	33
AgsI	TTSAA	4 cut(s)	83, 153, 323, 955
AhlI	ACTAGT	1 cut(s)	1037
AjiI	CACGTC	1 cut(s)	722
AjnI	CCWGG	1 cut(s)	990
AluBI	AGCT	7 cut(s)	109, 194, 520, 580, 890, 986, 1068
AluI	AGCT	7 cut(s)	109, 194, 520, 580, 890, 986, 1068
Alw21I	GWGCWC	2 cut(s)	346, 721
AlwNI	CAGNNNCTG	1 cut(s)	383
ApeKI	GCWGC	2 cut(s)	10, 890
ApoI	RAATTY	2 cut(s)	796, 1015
Asp700I	GAANNNNTTC	1 cut(s)	622
AspLEI	GCGC	1 cut(s)	283
AsuHPI	GGTGA	1 cut(s)	1142
BbsI	GAAGAC	2 cut(s)	519, 705
Bbv12I	GWGCWC	2 cut(s)	346, 721
BbvI	GCAGC	2 cut(s)	22, 877
BccI	CCATC	3 cut(s)	52, 907, 936
BciT130I	CCWGG	1 cut(s)	992
BciVI	GTATCC	1 cut(s)	445
BcuI	ACTAGT	1 cut(s)	1037
BfaI	CTAG	1 cut(s)	1038
BfuAI	ACCTGC	2 cut(s)	1107, 1118
BfuI	GTATCC	1 cut(s)	445
BglII	AGATCT	1 cut(s)	1001
BisI	GCNGC	2 cut(s)	11, 891
BlsI	GCNGC	2 cut(s)	12, 892
Bme1390I	CCNGG	1 cut(s)	992
BmgBI	CACGTC	1 cut(s)	722
BmrFI	CCNGG	1 cut(s)	992
BmsI	GCATC	8 cut(s)	166, 239, 292, 730, 897, 907, 964, 1015
BpiI	GAAGAC	2 cut(s)	519, 705
BsaAI	YACGTR	2 cut(s)	410, 461
BsaBI	GATNNNNATC	1 cut(s)	423
BsaJI	CCNNGG	3 cut(s)	550, 613, 990
Bsc4I	CCNNNNNNNGG	1 cut(s)	33
Bse3DI	GCAATG	1 cut(s)	1144
Bse8I	GATNNNNATC	1 cut(s)	423
BseBI	CCWGG	1 cut(s)	992
BseDI	CCNNGG	3 cut(s)	550, 613, 990
BseGI	GGATG	3 cut(s)	268, 922, 1030
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	1 cut(s)	33
BseMI	GCAATG	1 cut(s)	1144
BseMII	CTCAG	1 cut(s)	912
BseRI	GAGGAG	1 cut(s)	1094
BseXI	GCAGC	2 cut(s)	22, 877
BsiHKAI	GWGCWC	2 cut(s)	346, 721
BslI	CCNNNNNNNGG	1 cut(s)	33
BsmI	GAATGC	6 cut(s)	247, 436, 499, 559, 622, 685
Bsp1286I	GDGCHC	2 cut(s)	346, 721
Bsp143I	GATC	2 cut(s)	467, 1001
BspACI	CCGC	1 cut(s)	863
BspCNI	CTCAG	1 cut(s)	913
BspMI	ACCTGC	2 cut(s)	1107, 1118
BsrDI	GCAATG	1 cut(s)	1144
BssECI	CCNNGG	3 cut(s)	550, 613, 990
BssMI	GATC	2 cut(s)	467, 1001
Bst2UI	CCWGG	1 cut(s)	992
Bst4CI	ACNGT	7 cut(s)	140, 491, 551, 614, 677, 767, 1152
BstBAI	YACGTR	2 cut(s)	410, 461
BstC8I	GCNNGC	1 cut(s)	346
BstDEI	CTNAG	1 cut(s)	921
BstDSI	CCRYGG	2 cut(s)	550, 613
BstF5I	GGATG	3 cut(s)	268, 922, 1030
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	2 cut(s)	470, 1004
BstMBI	GATC	2 cut(s)	467, 1001
BstMWI	GCNNNNNNNGC	4 cut(s)	16, 163, 983, 992
BstNI	CCWGG	1 cut(s)	992
BstSCI	CCNGG	1 cut(s)	990
BstV1I	GCAGC	2 cut(s)	22, 877
BstV2I	GAAGAC	2 cut(s)	519, 705
BstX2I	RGATCY	1 cut(s)	1001
BstYI	RGATCY	1 cut(s)	1001
BsuI	GTATCC	1 cut(s)	445
BtgI	CCRYGG	2 cut(s)	550, 613
BtrI	CACGTC	1 cut(s)	722
BtsCI	GGATG	3 cut(s)	268, 922, 1030
BtsI	GCAGTG	1 cut(s)	421
BtsIMutI	CAGTG	1 cut(s)	421
BveI	ACCTGC	2 cut(s)	1107, 1118
Cac8I	GCNNGC	1 cut(s)	346
CaiI	CAGNNNCTG	1 cut(s)	383
CfoI	GCGC	1 cut(s)	283
CseI	GACGC	1 cut(s)	839
CviAII	CATG	7 cut(s)	272, 302, 365, 428, 791, 820, 929
DdeI	CTNAG	1 cut(s)	921
DpnI	GATC	2 cut(s)	469, 1003
DpnII	GATC	2 cut(s)	467, 1001
EciI	GGCGGA	1 cut(s)	852
Eco57I	CTGAAG	2 cut(s)	405, 1143
EcoRII	CCWGG	1 cut(s)	990
EcoT22I	ATGCAT	1 cut(s)	1144
FaeI	CATG	7 cut(s)	275, 305, 368, 431, 794, 823, 932
FalI	AAGNNNNNCTT	2 cut(s)	1004, 1036
FatI	CATG	7 cut(s)	271, 301, 364, 427, 790, 819, 928
Fnu4HI	GCNGC	2 cut(s)	11, 891
FokI	GGATG	3 cut(s)	275, 929, 1037
Fsp4HI	GCNGC	2 cut(s)	11, 891
FspBI	CTAG	1 cut(s)	1038
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	2 cut(s)	11, 891
HgaI	GACGC	1 cut(s)	839
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	7 cut(s)	275, 305, 368, 431, 794, 823, 932
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HphI	GGTGA	1 cut(s)	1142
Hpy188III	TCNNGA	1 cut(s)	55
Hpy99I	CGWCG	5 cut(s)	129, 726, 855, 1095, 1152
HpyAV	CCTTC	3 cut(s)	112, 952, 1051
HpyCH4III	ACNGT	7 cut(s)	140, 491, 551, 614, 677, 767, 1152
HpyCH4IV	ACGT	6 cut(s)	124, 334, 409, 460, 721, 949
HpyCH4V	TGCA	5 cut(s)	910, 928, 977, 1111, 1142
HpyF10VI	GCNNNNNNNGC	4 cut(s)	16, 163, 983, 992
HpyF3I	CTNAG	1 cut(s)	921
HpySE526I	ACGT	6 cut(s)	124, 334, 409, 460, 721, 949
Hsp92II	CATG	7 cut(s)	275, 305, 368, 431, 794, 823, 932
HspAI	GCGC	1 cut(s)	281
Kzo9I	GATC	2 cut(s)	467, 1001
Lsp1109I	GCAGC	2 cut(s)	22, 877
LweI	GCATC	8 cut(s)	166, 239, 292, 730, 897, 907, 964, 1015
MaeI	CTAG	1 cut(s)	1038
MaeII	ACGT	6 cut(s)	124, 334, 409, 460, 721, 949
MaeIII	GTNAC	1 cut(s)	461
MalI	GATC	2 cut(s)	469, 1003
MboI	GATC	2 cut(s)	467, 1001
MflI	RGATCY	1 cut(s)	1001
MhlI	GDGCHC	2 cut(s)	346, 721
MluCI	AATT	3 cut(s)	392, 796, 1015
MmeI	TCCRAC	1 cut(s)	107
Mph1103I	ATGCAT	1 cut(s)	1144
MroXI	GAANNNNTTC	1 cut(s)	622
MseI	TTAA	6 cut(s)	39, 243, 306, 495, 899, 1032
MslI	CAYNNNNRTG	2 cut(s)	288, 477
MspA1I	CMGCKG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	992
Mva1269I	GAATGC	6 cut(s)	247, 436, 499, 559, 622, 685
MvaI	CCWGG	1 cut(s)	992
MwoI	GCNNNNNNNGC	4 cut(s)	16, 163, 983, 992
NdeII	GATC	2 cut(s)	467, 1001
NlaIII	CATG	7 cut(s)	275, 305, 368, 431, 794, 823, 932
NsiI	ATGCAT	1 cut(s)	1144
PaqCI	CACCTGC	1 cut(s)	1118
PctI	GAATGC	6 cut(s)	247, 436, 499, 559, 622, 685
PdmI	GAANNNNTTC	1 cut(s)	622
PkrI	GCNGC	2 cut(s)	12, 892
Ppu21I	YACGTR	2 cut(s)	410, 461
Psp1406I	AACGTT	1 cut(s)	949
Psp6I	CCWGG	1 cut(s)	990
PspGI	CCWGG	1 cut(s)	990
PstNI	CAGNNNCTG	1 cut(s)	383
PsuI	RGATCY	1 cut(s)	1001
PvuII	CAGCTG	1 cut(s)	194
RseI	CAYNNNNRTG	2 cut(s)	288, 477
SaqAI	TTAA	6 cut(s)	39, 243, 306, 495, 899, 1032
SatI	GCNGC	2 cut(s)	11, 891
Sau3AI	GATC	2 cut(s)	467, 1001
ScrFI	CCNGG	1 cut(s)	992
SduI	GDGCHC	2 cut(s)	346, 721
SfaNI	GCATC	8 cut(s)	166, 239, 292, 730, 897, 907, 964, 1015
SmiMI	CAYNNNNRTG	2 cut(s)	288, 477
SpeI	ACTAGT	1 cut(s)	1037
Sse9I	AATT	3 cut(s)	392, 796, 1015
SsiI	CCGC	1 cut(s)	863
SspMI	CTAG	1 cut(s)	1038
StyD4I	CCNGG	1 cut(s)	990
TaaI	ACNGT	7 cut(s)	140, 491, 551, 614, 677, 767, 1152
TaiI	ACGT	6 cut(s)	127, 337, 412, 463, 724, 952
TaqI	TCGA	6 cut(s)	535, 598, 661, 724, 829, 1147
TasI	AATT	3 cut(s)	392, 796, 1015
Tru1I	TTAA	6 cut(s)	39, 243, 306, 495, 899, 1032
Tru9I	TTAA	6 cut(s)	39, 243, 306, 495, 899, 1032
TscAI	CASTG	1 cut(s)	421
TseI	GCWGC	2 cut(s)	10, 890
TspDTI	ATGAA	8 cut(s)	279, 288, 342, 405, 654, 807, 849, 945
TspGWI	ACGGA	1 cut(s)	1079
TspRI	CASTG	1 cut(s)	421
XapI	RAATTY	2 cut(s)	796, 1015
XmnI	GAANNNNTTC	1 cut(s)	622
XspI	CTAG	1 cut(s)	1038
Zsp2I	ATGCAT	1 cut(s)	1144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.