Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006065

Physical Location & Seq

Genomic Coordinates Reverse (-)

12894179 .. 12897295

Gene Structure 3117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G161500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGGCGTTGAAATTTCTGAACAAGAAGGGATGGCACACAGGGAGCCTTCGGAAACATAGAGAACCGCAAGAGTGGTTGGAGCGGTTGAAGTTCTTGTATGATTCGGGATTGGCCATTGGGAGGCCTGTTGGTTCCGATAGTTTCAAAACCCTTGAAGCCTTACCCAAGACCGAAGACGCGCCTTCCTCCTCTGCCGCCTCCAAGCAGGCATCAGCATCTGTGCCCGGAGCTCTGTTCGAAGAAAAGCCTCAATCTGCCAATGATGCTTGGAGGAAGCTCCACTTGGATCCTTTGCTTATGACTCGGCAGCGTGAGCAGGAAACCCTTTCTCGTATTAAGAACAATCCTGTCCAGATGGCCATGATTCACAATTCTGTTGAAGCAAAGAAGCCCGCAGAGAAACTGCATGACAAGAAGGAACATCAGAAGAAGAAGCACCATAATGGTGCTTCAAAGCATAGCAAACATTCATCATCCATACAAGCATCAGATTCAGAAAATGATTCAAAGTATGTTAAGCATTCAGATTCGGAAGATGAATCACGTAAAAGAGCACGTCGACATTCTGAAGATGAATTCCGTTACAGAACACGGAGAAGTGAGAAGAACCATGTTAAACATTCAGATTTAGAAAATGAATCACATAACAGAGCACGTCGAAGTGGTAAGAATCCGGTTAACCATTCGGACTCCGAAGATGGATCACATTACAGAGCACGGAGAAGTGAGAAGAACCATGTTAAACATTCAGATTTAGAAGATGAATCACTTGACAGAACACGCCGAAGTGGGAAGAATCCTGTTAACCATTCAGATTCCGAAGATGAATTGCGTTACAGAGCACGGAGAAGTGAGAAGAACCATGTTAAGCATTCAGGTTCAGAAGATGTATCACGTAACAGAGCACATCGAAGTGGGAAGAACCCTGTTAAGCATTCAGATTCCGAAGATGAATCCCGTTACAGAGCACAGCGAAGTGAGAAGAACCATGTTAAACATTCAGATTCAGAAGATGAATCACGTAAAAGAGCAGGTCGAAGTGAGAAAAACCTTGTTAAGCATTCATATTCAGATGATGAATCACGTAACAGAGCAGACCGAGGTGATAAGAATCAGTCCATAAAAATTGGAAGAGATGATGGTCAAGGTGATGCCAAGGGAAAACATGACAATTTAGAACTAGGAAAATACCCCATGAAAGGTCGGAATGAATCACACTACAAGCGTCGAAATGTTGCTCCTAAACTTTCAGAAGAAGAAAGAGCTGCTACGCTAAAGGAGATGCGAATAGATGCTGAGTTGCATAAAGAGCAAAGATGGAAGCGATTGAAGAAGGCTGAGGAGAATGATGCACTGGAAGCTACCCAGGCTGTCAAATCCAGTGGTAGGAACTTCTTGGATGCTGTTCAAACAAGTGTTTATGGTGCTGAGAGGGGAGGAAACTCAACAATTGAGGAGAGTATACGTCACCAAACACATTATTTGCAGGGCAGATCTGAAGCAAGTGAACGCAATGCTTTTCGTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CWC25 Cir_N

Protein Analysis

510

Amino Acids

58.67

Weight (kDa)

9.71

Isoelectric Point (pI)

65.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44195 AT2G44200
fragaria_vesca	FvH4_4g13451
malus_domestica	MD04G1014200.v1.1
prunus_persica	Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161500_v2.0.a1 Prupe.1G161500_v2.0.a1 Prupe.1G161500_v2.0.a1 Prupe.1G162300_v2.0.a1
pyrus_communis	pycom04g01100
rosa_chinensis	RchiOBHm_Chr4g0414011
rosa_laevigata	RLG00000008185
rosa_multiflora	Rmu_sc0003264.1_g000022 Rmu_sc0006428.1_g000008
rosa_roxburghii	Rroxscaffold_5G00357930
rosa_rugosa	Rorug04G0125000
rosa_samantha	Rh4AG183500 Rh4BG183000 Rh4CG195500 Rh4DG178800
rosa_wichuraiana	Rw4G015600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1022
AccBSI	CCGCTC	1 cut(s)	82
AccI	GTMKAC	2 cut(s)	559, 1462
AccII	CGCG	1 cut(s)	179
AciI	CCGC	4 cut(s)	65, 82, 195, 393
AclWI	GGATC	3 cut(s)	281, 294, 709
AcoI	YGGCCR	2 cut(s)	111, 357
AcsI	RAATTY	2 cut(s)	11, 575
AcuI	CTGAAG	2 cut(s)	588, 1518
AfiI	CCNNNNNNNGG	3 cut(s)	120, 1199, 1386
AgsI	TTSAA	9 cut(s)	10, 88, 145, 155, 380, 453, 507, 1330, 1409
AjiI	CACGTC	2 cut(s)	557, 656
AjnI	CCWGG	1 cut(s)	1365
AjuI	GAANNNNNNNTTGG	2 cut(s)	266, 298
AluBI	AGCT	4 cut(s)	230, 277, 1265, 1361
AluI	AGCT	4 cut(s)	230, 277, 1265, 1361
Alw21I	GWGCWC	7 cut(s)	232, 556, 655, 718, 844, 907, 970
AlwI	GGATC	3 cut(s)	281, 294, 709
AlwNI	CAGNNNCTG	1 cut(s)	218
AoxI	GGCC	3 cut(s)	111, 122, 357
ApeKI	GCWGC	2 cut(s)	307, 1265
ApoI	RAATTY	2 cut(s)	11, 575
AspLEI	GCGC	1 cut(s)	181
AsuC2I	CCSGG	1 cut(s)	225
AsuHPI	GGTGA	3 cut(s)	1115, 1160, 1460
AsuII	TTCGAA	1 cut(s)	237
BaeGI	GKGCMC	1 cut(s)	225
BalI	TGGCCA	2 cut(s)	113, 359
BamHI	GGATCC	1 cut(s)	286
BanII	GRGCYC	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	180
Bbv12I	GWGCWC	7 cut(s)	232, 556, 655, 718, 844, 907, 970
BbvCI	CCTCAGC	1 cut(s)	1338
BbvI	GCAGC	2 cut(s)	319, 1252
BccI	CCATC	5 cut(s)	24, 349, 692, 1133, 1311
BciT130I	CCWGG	1 cut(s)	1367
BcnI	CCSGG	1 cut(s)	225
BfaI	CTAG	1 cut(s)	1181
BfuAI	ACCTGC	1 cut(s)	1022
BglII	AGATCT	1 cut(s)	1493
BisI	GCNGC	3 cut(s)	195, 308, 1266
BlsI	GCNGC	3 cut(s)	196, 309, 1267
Bme1390I	CCNGG	2 cut(s)	225, 1367
BmgBI	CACGTC	2 cut(s)	557, 656
BmiI	GGNNCC	3 cut(s)	44, 133, 288
BmrFI	CCNGG	2 cut(s)	225, 1367
BmsI	GCATC	9 cut(s)	218, 224, 253, 494, 1141, 1272, 1282, 1339, 1390
BpiI	GAAGAC	1 cut(s)	180
Bpu10I	CCTNAGC	1 cut(s)	1338
Bpu14I	TTCGAA	1 cut(s)	237
BpuMI	CCSGG	1 cut(s)	225
BsaAI	YACGTR	4 cut(s)	545, 896, 1022, 1085
BsaBI	GATNNNNATC	1 cut(s)	1110
BsaJI	CCNNGG	3 cut(s)	1099, 1155, 1365
BsaWI	WCCGGW	1 cut(s)	673
Bsc4I	CCNNNNNNNGG	3 cut(s)	120, 1199, 1386
Bse1I	ACTGG	2 cut(s)	1359, 1380
Bse3DI	GCAATG	1 cut(s)	1519
Bse8I	GATNNNNATC	1 cut(s)	1110
BseBI	CCWGG	1 cut(s)	1367
BseDI	CCNNGG	3 cut(s)	1099, 1155, 1365
BseGI	GGATG	3 cut(s)	35, 473, 1405
BseJI	GATNNNNATC	1 cut(s)	1110
BseLI	CCNNNNNNNGG	3 cut(s)	120, 1199, 1386
BseMI	GCAATG	1 cut(s)	1519
BseMII	CTCAG	3 cut(s)	1287, 1329, 1419
BseNI	ACTGG	2 cut(s)	1359, 1380
BseRI	GAGGAG	3 cut(s)	178, 1355, 1469
BseSI	GKGCMC	1 cut(s)	225
BseXI	GCAGC	2 cut(s)	319, 1252
Bsh1236I	CGCG	1 cut(s)	179
BshFI	GGCC	3 cut(s)	113, 124, 359
BsiHKAI	GWGCWC	7 cut(s)	232, 556, 655, 718, 844, 907, 970
BsiSI	CCGG	2 cut(s)	225, 674
BslI	CCNNNNNNNGG	3 cut(s)	120, 1199, 1386
BsmI	GAATGC	4 cut(s)	520, 871, 934, 1060
BsnI	GGCC	3 cut(s)	113, 124, 359
Bsp119I	TTCGAA	1 cut(s)	237
Bsp1286I	GDGCHC	8 cut(s)	225, 232, 556, 655, 718, 844, 907, 970
Bsp143I	GATC	3 cut(s)	286, 701, 1493
BspACI	CCGC	4 cut(s)	65, 82, 195, 393
BspANI	GGCC	3 cut(s)	113, 124, 359
BspCNI	CTCAG	3 cut(s)	1288, 1330, 1420
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	3 cut(s)	44, 133, 288
BspMI	ACCTGC	1 cut(s)	1022
BspPI	GGATC	3 cut(s)	281, 294, 709
BspT104I	TTCGAA	1 cut(s)	237
BsrBI	CCGCTC	1 cut(s)	82
BsrDI	GCAATG	1 cut(s)	1519
BsrI	ACTGG	2 cut(s)	1359, 1380
BssECI	CCNNGG	3 cut(s)	1099, 1155, 1365
BssMI	GATC	3 cut(s)	286, 701, 1493
BssNAI	GTATAC	1 cut(s)	1463
BssT1I	CCWWGG	1 cut(s)	1155
Bst1107I	GTATAC	1 cut(s)	1463
Bst2UI	CCWGG	1 cut(s)	1367
Bst6I	CTCTTC	1 cut(s)	1126
BstBAI	YACGTR	4 cut(s)	545, 896, 1022, 1085
BstBI	TTCGAA	1 cut(s)	237
BstC8I	GCNNGC	2 cut(s)	207, 393
BstDEI	CTNAG	3 cut(s)	1296, 1338, 1428
BstF5I	GGATG	3 cut(s)	35, 473, 1405
BstFNI	CGCG	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	3 cut(s)	289, 704, 1496
BstMBI	GATC	3 cut(s)	286, 701, 1493
BstMWI	GCNNNNNNNGC	5 cut(s)	263, 313, 1309, 1358, 1367
BstNI	CCWGG	1 cut(s)	1367
BstSCI	CCNGG	2 cut(s)	223, 1365
BstSLI	GKGCMC	1 cut(s)	225
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	2 cut(s)	319, 1252
BstV2I	GAAGAC	1 cut(s)	180
BstX2I	RGATCY	2 cut(s)	286, 1493
BstYI	RGATCY	2 cut(s)	286, 1493
BstZ17I	GTATAC	1 cut(s)	1463
BsuRI	GGCC	3 cut(s)	113, 124, 359
BtrI	CACGTC	2 cut(s)	557, 656
BtsCI	GGATG	3 cut(s)	35, 473, 1405
BtsIMutI	CAGTG	2 cut(s)	1352, 1387
BveI	ACCTGC	1 cut(s)	1022
Cac8I	GCNNGC	2 cut(s)	207, 393
CaiI	CAGNNNCTG	1 cut(s)	218
CfoI	GCGC	1 cut(s)	181
CseI	GACGC	2 cut(s)	185, 1214
CspCI	CAANNNNNGTGG	2 cut(s)	1363, 1398
CviAII	CATG	8 cut(s)	361, 407, 611, 737, 863, 989, 1166, 1195
DdeI	CTNAG	3 cut(s)	1296, 1338, 1428
DpnI	GATC	3 cut(s)	288, 703, 1495
DpnII	GATC	3 cut(s)	286, 701, 1493
EaeI	YGGCCR	2 cut(s)	111, 357
Eam1104I	CTCTTC	1 cut(s)	1126
EarI	CTCTTC	1 cut(s)	1126
Ecl136II	GAGCTC	1 cut(s)	230
Eco130I	CCWWGG	1 cut(s)	1155
Eco147I	AGGCCT	1 cut(s)	124
Eco24I	GRGCYC	1 cut(s)	232
Eco53kI	GAGCTC	1 cut(s)	230
Eco57I	CTGAAG	2 cut(s)	588, 1518
EcoICRI	GAGCTC	1 cut(s)	230
EcoRI	GAATTC	1 cut(s)	575
EcoRII	CCWGG	1 cut(s)	1365
EcoT14I	CCWWGG	1 cut(s)	1155
EcoT38I	GRGCYC	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	1155
FaeI	CATG	8 cut(s)	364, 410, 614, 740, 866, 992, 1169, 1198
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FatI	CATG	8 cut(s)	360, 406, 610, 736, 862, 988, 1165, 1194
FauI	CCCGC	1 cut(s)	400
FblI	GTMKAC	2 cut(s)	559, 1462
Fnu4HI	GCNGC	3 cut(s)	195, 308, 1266
FokI	GGATG	3 cut(s)	42, 460, 1412
FriOI	GRGCYC	1 cut(s)	232
Fsp4HI	GCNGC	3 cut(s)	195, 308, 1266
FspBI	CTAG	1 cut(s)	1181
GlaI	GCGC	1 cut(s)	180
GluI	GCNGC	3 cut(s)	195, 308, 1266
HaeIII	GGCC	3 cut(s)	113, 124, 359
HapII	CCGG	2 cut(s)	225, 674
HgaI	GACGC	2 cut(s)	185, 1214
HhaI	GCGC	1 cut(s)	181
Hin1II	CATG	8 cut(s)	364, 410, 614, 740, 866, 992, 1169, 1198
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HincII	GTYRAC	3 cut(s)	560, 679, 805
HindII	GTYRAC	3 cut(s)	560, 679, 805
HpaI	GTTAAC	2 cut(s)	679, 805
HpaII	CCGG	2 cut(s)	225, 674
HphI	GGTGA	3 cut(s)	1115, 1160, 1460
Hpy166II	GTNNAC	5 cut(s)	560, 679, 805, 1463, 1508
Hpy188III	TCNNGA	2 cut(s)	105, 352
Hpy8I	GTNNAC	5 cut(s)	560, 679, 805, 1463, 1508
Hpy99I	CGWCG	4 cut(s)	561, 660, 1230, 1527
HpyAV	CCTTC	5 cut(s)	19, 56, 192, 409, 1327
HpyCH4IV	ACGT	7 cut(s)	544, 556, 655, 895, 1021, 1084, 1465
HpyCH4V	TGCA	4 cut(s)	406, 1303, 1352, 1486
HpyF10VI	GCNNNNNNNGC	5 cut(s)	263, 313, 1309, 1358, 1367
HpyF3I	CTNAG	3 cut(s)	1296, 1338, 1428
HpySE526I	ACGT	7 cut(s)	544, 556, 655, 895, 1021, 1084, 1465
Hsp92II	CATG	8 cut(s)	364, 410, 614, 740, 866, 992, 1169, 1198
HspAI	GCGC	1 cut(s)	179
KspAI	GTTAAC	2 cut(s)	679, 805
Kzo9I	GATC	3 cut(s)	286, 701, 1493
LmnI	GCTCC	5 cut(s)	42, 79, 227, 282, 1243
Lsp1109I	GCAGC	2 cut(s)	319, 1252
LweI	GCATC	9 cut(s)	218, 224, 253, 494, 1141, 1272, 1282, 1339, 1390
MaeI	CTAG	1 cut(s)	1181
MaeII	ACGT	7 cut(s)	544, 556, 655, 895, 1021, 1084, 1465
MaeIII	GTNAC	6 cut(s)	581, 833, 896, 959, 1085, 1466
MalI	GATC	3 cut(s)	288, 703, 1495
MbiI	CCGCTC	1 cut(s)	82
MboI	GATC	3 cut(s)	286, 701, 1493
MfeI	CAATTG	1 cut(s)	1449
MflI	RGATCY	2 cut(s)	286, 1493
MhlI	GDGCHC	8 cut(s)	225, 232, 556, 655, 718, 844, 907, 970
MlsI	TGGCCA	2 cut(s)	113, 359
MluCI	AATT	7 cut(s)	11, 370, 575, 827, 1125, 1171, 1449
MluNI	TGGCCA	2 cut(s)	113, 359
MlyI	GAGTC	2 cut(s)	295, 683
MmeI	TCCRAC	2 cut(s)	57, 1184
Mox20I	TGGCCA	2 cut(s)	113, 359
MscI	TGGCCA	2 cut(s)	113, 359
MslI	CAYNNNNRTG	3 cut(s)	441, 444, 912
Msp20I	TGGCCA	2 cut(s)	113, 359
MspI	CCGG	2 cut(s)	225, 674
MspR9I	CCNGG	2 cut(s)	225, 1367
MunI	CAATTG	1 cut(s)	1449
Mva1269I	GAATGC	4 cut(s)	520, 871, 934, 1060
MvaI	CCWGG	1 cut(s)	1367
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	5 cut(s)	263, 313, 1309, 1358, 1367
NciI	CCSGG	1 cut(s)	225
NdeII	GATC	3 cut(s)	286, 701, 1493
NlaIII	CATG	8 cut(s)	364, 410, 614, 740, 866, 992, 1169, 1198
NlaIV	GGNNCC	3 cut(s)	44, 133, 288
NmeAIII	GCCGAG	1 cut(s)	283
NmuCI	GTSAC	1 cut(s)	1466
NspV	TTCGAA	1 cut(s)	237
PceI	AGGCCT	1 cut(s)	124
PctI	GAATGC	4 cut(s)	520, 871, 934, 1060
PkrI	GCNGC	3 cut(s)	196, 309, 1267
PleI	GAGTC	2 cut(s)	295, 683
PpsI	GAGTC	2 cut(s)	295, 683
Ppu21I	YACGTR	4 cut(s)	545, 896, 1022, 1085
Psp124BI	GAGCTC	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	1365
PspGI	CCWGG	1 cut(s)	1365
PspN4I	GGNNCC	3 cut(s)	44, 133, 288
PstNI	CAGNNNCTG	1 cut(s)	218
PsuI	RGATCY	2 cut(s)	286, 1493
RseI	CAYNNNNRTG	3 cut(s)	441, 444, 912
SacI	GAGCTC	1 cut(s)	232
SalI	GTCGAC	1 cut(s)	558
SatI	GCNGC	3 cut(s)	195, 308, 1266
Sau3AI	GATC	3 cut(s)	286, 701, 1493
SchI	GAGTC	2 cut(s)	295, 683
ScrFI	CCNGG	2 cut(s)	225, 1367
SduI	GDGCHC	8 cut(s)	225, 232, 556, 655, 718, 844, 907, 970
SfaNI	GCATC	9 cut(s)	218, 224, 253, 494, 1141, 1272, 1282, 1339, 1390
SfuI	TTCGAA	1 cut(s)	237
SmiMI	CAYNNNNRTG	3 cut(s)	441, 444, 912
Sse9I	AATT	7 cut(s)	11, 370, 575, 827, 1125, 1171, 1449
SseBI	AGGCCT	1 cut(s)	124
SsiI	CCGC	4 cut(s)	65, 82, 195, 393
SspMI	CTAG	1 cut(s)	1181
SstI	GAGCTC	1 cut(s)	232
StuI	AGGCCT	1 cut(s)	124
StyD4I	CCNGG	2 cut(s)	223, 1365
StyI	CCWWGG	1 cut(s)	1155
TaiI	ACGT	7 cut(s)	547, 559, 658, 898, 1024, 1087, 1468
TaqI	TCGA	6 cut(s)	237, 559, 658, 910, 1036, 1228
TaqII	GACCGA	2 cut(s)	185, 1113
TasI	AATT	7 cut(s)	11, 370, 575, 827, 1125, 1171, 1449
TauI	GCSGC	1 cut(s)	197
TscAI	CASTG	2 cut(s)	1359, 1387
TseFI	GTSAC	1 cut(s)	1466
TseI	GCWGC	2 cut(s)	307, 1265
Tsp45I	GTSAC	1 cut(s)	1466
TspGWI	ACGGA	4 cut(s)	569, 607, 733, 859
TspRI	CASTG	2 cut(s)	1359, 1387
XapI	RAATTY	2 cut(s)	11, 575
XmiI	GTMKAC	2 cut(s)	559, 1462
XspI	CTAG	1 cut(s)	1181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.