RchiOBHm_Chr4g0414011

Pre-mRNA-splicing factor cwc25

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
38371519 .. 38374625
3107 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38446

Sequence Viewer

Length: 1581 bp
ATGGCGTTGAAGTTTCTGAACAAGAAGGGGTGGCACACGGGGAGCCTCCGGAACATAGAGAACGTGTGGAAGGCGGAGCAGAAGCACGCCGCCGAAGAGAAGAAGCTCGACGAGCTCCGCAAACAGATCGTCGAAGAAAGAGAACGCTCCGAGTTCCGTGAGCTCCAGGAGCAAGCCGGCCTCGTCCCCAAGCAAGAACGATTGGAGTTCCTCTACGATTCCGGATTGGCCGTAGGGCGCCCTGGCGGCTCTGATAATTTCAAGGAAGCCTTCACCAAAGCTGAAGAACCGTCTTCTTCCTCCGCCGCTGCCGCTGCCACCGCTAAGGAGGCATCATCATCTGCGCCGGGGGCTCTGTTCGCAGCAGACAAGCCTCAGTCTGCCAATGATGCATGGAGGAAGCTTCACTCGGATCCTTTGCTTATGATTAAGCAGCGAGAGCAGGAAGCCCTCTCTCGGATCAAGAACAATCCTGTCCAGATGGCTATGATTCGCAAACAAGTTGAAGCAAAGAAGCCTAAGGAAAAAGAGCGTGACAAGAAGGAACATCGGAAGAAACACCGTAAAGATTCTTCAAAGCACCGGAAGCAAACGTCTGATTCAGAAGATGACACAGCTGATATGGAAAGGAGGAAGAATAGTCATCGTAAGGCATCAAAATATGTTAAGCATTCAGAAGCAGAGGATGAACCACATGAAAAAGCACATCGAAGTGAGAAGAACCATGTTAAGCAGTCAAATGTTGAAGATGAATCACGTTATAGAGCACGCCAAAGTGGGAAAACCCATGCTAAGTATTCAGATTCTGAAGATGAATTGCGTAGCAAAGCACGTAGTAGTGATAAAAACCATTTTAGGCATTCAGATTTGGAGGATACATCACGTAACAGAGCACGTCGAAGTGAGAAGAACCGTGTTAAGCATTCAGATTCAGAAGATGAGCTACATTACAGAAGAAGTCGAAGTGAGAAGAACCGTGGCAAGCATTCAGATTCAGAAGATGAGCTACATAACAGAAGAAGTCGAAGTGAGAGAAACCGTGGTAAGCATGCAGATTCAGAAGATGAACTACATAACAGAACAAGTCGAAGTGAGAAGAAGCATGTCAAGCATTCAGATTCAGAAGACGGGCTACATAACAGAGCACGTCGAAGTGAGACAGATCATGCCATAACAAGGGCAAAAGACGACGGTCAAGGTATTGTCAAGGGAAGACATGAAAATTCAGAACAAGAAAACTATTCCATGAGAGGTAGAAATGAATCCCACAACAAGCGTCGGTTTGTTCCACCTAAACTTTCAGAAGAAGAAAGAGCTGCTAGGCTAAAGGAGATGCAGATGGATGCTGAGTTGCATGAAGAACAAAGATGGAAACGTTTGAAGAAGGCTGACGAGAATGATGCACGAGAAGCTACCCAAGCTATCAGATCTGGCGGTAAGAATTTCTTGGATGCTGTTAAAACTAGTGTTTATGGTTCTGGGAAGGGAGGAAGCTCAACAATAGAGGAGAGTGTCCGTCGCAGAACACATTATTTGCAGGGCAGGTCTGAAGCAAGTGAAAGCAATGCATTTCGACGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

526

Amino Acids

60.96

Weight (kDa)

9.66

Isoelectric Point (pI)

72.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cir_N PF10197 11 - 46 4.8e-14 N-terminal domain of CBF1 interacting co-repressor CIR
CWC25 PF12542 64 - 158 6.3e-15 Pre-mRNA splicing factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1533
AccB1I GGYRCC 1 cut(s) 237
AccIII TCCGGA 2 cut(s) 48, 221
AciI CCGC 9 cut(s) 74, 90, 118, 246, 303, 306, 312, 321, 1434
AclI AACGTT 1 cut(s) 1375
AclWI GGATC 3 cut(s) 407, 420, 467
AcoI YGGCCR 1 cut(s) 228
AcsI RAATTY 2 cut(s) 1222, 1441
AcuI CTGAAG 3 cut(s) 303, 828, 1569
AcyI GRCGYC 1 cut(s) 238
AfiI CCNNNNNNNGG 2 cut(s) 456, 1176
AflIII ACRYGT 1 cut(s) 63
AgsI TTSAA 6 cut(s) 10, 262, 506, 576, 746, 1381
AhlI ACTAGT 1 cut(s) 1463
AjiI CACGTC 2 cut(s) 896, 1148
AjnI CCWGG 2 cut(s) 165, 241
Alw21I GWGCWC 5 cut(s) 117, 165, 769, 895, 1147
Alw26I GTCTC 1 cut(s) 1151
AlwI GGATC 3 cut(s) 407, 420, 467
AlwNI CAGNNNCTG 1 cut(s) 806
Aor13HI TCCGGA 2 cut(s) 48, 221
AoxI GGCC 2 cut(s) 178, 228
ApeKI GCWGC 5 cut(s) 308, 314, 362, 433, 1316
ApoI RAATTY 2 cut(s) 1222, 1441
ArsI GACNNNNNNTTYG 2 cut(s) 114, 146
AspLEI GCGC 2 cut(s) 240, 346
AsuC2I CCSGG 1 cut(s) 348
AsuHPI GGTGA 1 cut(s) 265
AxyI CCTNAGG 1 cut(s) 519
BamHI GGATCC 1 cut(s) 412
BanI GGYRCC 1 cut(s) 237
BanII GRGCYC 3 cut(s) 117, 165, 355
BauI CACGAG 1 cut(s) 1404
BbsI GAAGAC 3 cut(s) 285, 1131, 1219
Bbv12I GWGCWC 5 cut(s) 117, 165, 769, 895, 1147
BbvI GCAGC 5 cut(s) 295, 301, 374, 445, 1303
BccI CCATC 3 cut(s) 475, 1333, 1362
BceAI ACGGC 1 cut(s) 215
BcgI CGANNNNNNTGC 4 cut(s) 109, 143, 1382, 1416
BciT130I CCWGG 2 cut(s) 167, 243
BciVI GTATCC 1 cut(s) 868
BcnI CCSGG 1 cut(s) 348
BcoDI GTCTC 1 cut(s) 1151
BcuI ACTAGT 1 cut(s) 1463
BfaI CTAG 2 cut(s) 1320, 1464
BfoI RGCGCY 1 cut(s) 241
BfuAI ACCTGC 1 cut(s) 1533
BfuI GTATCC 1 cut(s) 868
BglI GCCNNNNNGGC 1 cut(s) 246
BglII AGATCT 1 cut(s) 1427
BisI GCNGC 9 cut(s) 90, 247, 306, 309, 312, 315, 363, 434, 1317
BlsI GCNGC 9 cut(s) 91, 248, 307, 310, 313, 316, 364, 435, 1318
Bme1390I CCNGG 3 cut(s) 167, 243, 348
BmgBI CACGTC 2 cut(s) 896, 1148
BmiI GGNNCC 3 cut(s) 44, 239, 414
BmrFI CCNGG 3 cut(s) 167, 243, 348
BmsI GCATC 7 cut(s) 341, 379, 662, 1323, 1333, 1390, 1441
BoxI GACNNNNGTC 1 cut(s) 1191
BpiI GAAGAC 3 cut(s) 285, 1131, 1219
BpmI CTGGAG 1 cut(s) 149
Bpu10I CCTNAGC 1 cut(s) 324
BpuMI CCSGG 1 cut(s) 348
BsaAI YACGTR 2 cut(s) 833, 884
BsaHI GRCGYC 1 cut(s) 238
BsaJI CCNNGG 4 cut(s) 241, 347, 976, 1039
BsaWI WCCGGW 3 cut(s) 48, 221, 582
Bsc4I CCNNNNNNNGG 2 cut(s) 456, 1176
Bse118I RCCGGY 1 cut(s) 176
Bse21I CCTNAGG 1 cut(s) 519
Bse3DI GCAATG 1 cut(s) 1570
BseAI TCCGGA 2 cut(s) 48, 221
BseBI CCWGG 2 cut(s) 167, 243
BseDI CCNNGG 4 cut(s) 241, 347, 976, 1039
BseGI GGATG 3 cut(s) 691, 1348, 1456
BseLI CCNNNNNNNGG 2 cut(s) 456, 1176
BseMI GCAATG 1 cut(s) 1570
BseMII CTCAG 2 cut(s) 389, 1338
BseRI GAGGAG 1 cut(s) 1520
BseXI GCAGC 5 cut(s) 295, 301, 374, 445, 1303
BshFI GGCC 2 cut(s) 180, 230
BshNI GGYRCC 1 cut(s) 237
BsiHKAI GWGCWC 5 cut(s) 117, 165, 769, 895, 1147
BsiSI CCGG 5 cut(s) 49, 177, 222, 347, 583
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 2 cut(s) 456, 1176
BsmAI GTCTC 1 cut(s) 1151
BsmFI GGGAC 1 cut(s) 170
BsmI GAATGC 5 cut(s) 670, 859, 922, 985, 1111
BsnI GGCC 2 cut(s) 180, 230
Bsp1286I GDGCHC 6 cut(s) 117, 165, 355, 769, 895, 1147
Bsp13I TCCGGA 2 cut(s) 48, 221
Bsp143I GATC 5 cut(s) 126, 412, 459, 1162, 1427
BspACI CCGC 9 cut(s) 74, 90, 118, 246, 303, 306, 312, 321, 1434
BspANI GGCC 2 cut(s) 180, 230
BspCNI CTCAG 2 cut(s) 388, 1339
BspEI TCCGGA 2 cut(s) 48, 221
BspLI GGNNCC 3 cut(s) 44, 239, 414
BspMI ACCTGC 1 cut(s) 1533
BspPI GGATC 3 cut(s) 407, 420, 467
BspT107I GGYRCC 1 cut(s) 237
BsrDI GCAATG 1 cut(s) 1570
BsrFI RCCGGY 1 cut(s) 176
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 4 cut(s) 241, 347, 976, 1039
BssMI GATC 5 cut(s) 126, 412, 459, 1162, 1427
BssNI GRCGYC 1 cut(s) 238
BssSI CACGAG 1 cut(s) 1404
Bst2BI CACGAG 1 cut(s) 1404
Bst2UI CCWGG 2 cut(s) 167, 243
Bst4CI ACNGT 7 cut(s) 291, 563, 914, 977, 1040, 1193, 1578
Bst6I CTCTTC 1 cut(s) 90
BstACI GRCGYC 1 cut(s) 238
BstBAI YACGTR 2 cut(s) 833, 884
BstC8I GCNNGC 6 cut(s) 87, 174, 178, 769, 983, 1050
BstDEI CTNAG 5 cut(s) 324, 375, 519, 792, 1347
BstDSI CCRYGG 2 cut(s) 976, 1039
BstF5I GGATG 3 cut(s) 691, 1348, 1456
BstH2I RGCGCY 1 cut(s) 241
BstHHI GCGC 2 cut(s) 240, 346
BstKTI GATC 5 cut(s) 129, 415, 462, 1165, 1430
BstMAI GTCTC 1 cut(s) 1151
BstMBI GATC 5 cut(s) 126, 412, 459, 1162, 1427
BstNI CCWGG 2 cut(s) 167, 243
BstNSI RCATGY 2 cut(s) 1052, 1106
BstPAI GACNNNNGTC 1 cut(s) 1191
BstSCI CCNGG 3 cut(s) 165, 241, 346
BstV1I GCAGC 5 cut(s) 295, 301, 374, 445, 1303
BstV2I GAAGAC 3 cut(s) 285, 1131, 1219
BstX2I RGATCY 2 cut(s) 412, 1427
BstYI RGATCY 2 cut(s) 412, 1427
Bsu36I CCTNAGG 1 cut(s) 519
BsuI GTATCC 1 cut(s) 868
BsuRI GGCC 2 cut(s) 180, 230
BtgI CCRYGG 2 cut(s) 976, 1039
BtrI CACGTC 2 cut(s) 896, 1148
BtsCI GGATG 3 cut(s) 691, 1348, 1456
BveI ACCTGC 1 cut(s) 1533
Cac8I GCNNGC 6 cut(s) 87, 174, 178, 769, 983, 1050
CaiI CAGNNNCTG 1 cut(s) 806
CfoI GCGC 2 cut(s) 240, 346
Cfr10I RCCGGY 1 cut(s) 176
CseI GACGC 1 cut(s) 1265
DdeI CTNAG 5 cut(s) 324, 375, 519, 792, 1347
DinI GGCGCC 1 cut(s) 239
DpnI GATC 5 cut(s) 128, 414, 461, 1164, 1429
DpnII GATC 5 cut(s) 126, 412, 459, 1162, 1427
EaeI YGGCCR 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
EciI GGCGGA 2 cut(s) 89, 292
Ecl136II GAGCTC 2 cut(s) 115, 163
Eco24I GRGCYC 3 cut(s) 117, 165, 355
Eco53kI GAGCTC 2 cut(s) 115, 163
Eco57I CTGAAG 3 cut(s) 303, 828, 1569
Eco81I CCTNAGG 1 cut(s) 519
EcoICRI GAGCTC 2 cut(s) 115, 163
EcoRII CCWGG 2 cut(s) 165, 241
EcoT22I ATGCAT 2 cut(s) 394, 1570
EcoT38I GRGCYC 3 cut(s) 117, 165, 355
EgeI GGCGCC 1 cut(s) 239
EheI GGCGCC 1 cut(s) 239
FalI AAGNNNNNCTT 4 cut(s) 254, 286, 1430, 1462
FaqI GGGAC 1 cut(s) 170
Fnu4HI GCNGC 9 cut(s) 90, 247, 306, 309, 312, 315, 363, 434, 1317
FokI GGATG 3 cut(s) 698, 1355, 1463
FriOI GRGCYC 3 cut(s) 117, 165, 355
Fsp4HI GCNGC 9 cut(s) 90, 247, 306, 309, 312, 315, 363, 434, 1317
FspBI CTAG 2 cut(s) 1320, 1464
GlaI GCGC 2 cut(s) 239, 345
GluI GCNGC 9 cut(s) 90, 247, 306, 309, 312, 315, 363, 434, 1317
GsuI CTGGAG 1 cut(s) 149
HaeII RGCGCY 1 cut(s) 241
HaeIII GGCC 2 cut(s) 180, 230
HapII CCGG 5 cut(s) 49, 177, 222, 347, 583
HgaI GACGC 1 cut(s) 1265
HhaI GCGC 2 cut(s) 240, 346
Hin1I GRCGYC 1 cut(s) 238
Hin6I GCGC 2 cut(s) 238, 344
HinP1I GCGC 2 cut(s) 238, 344
HindIII AAGCTT 1 cut(s) 401
HpaII CCGG 5 cut(s) 49, 177, 222, 347, 583
HphI GGTGA 1 cut(s) 265
Hpy188III TCNNGA 4 cut(s) 49, 222, 463, 478
Hpy99I CGWCG 8 cut(s) 113, 134, 900, 1152, 1193, 1281, 1521, 1578
HpyAV CCTTC 6 cut(s) 19, 64, 280, 535, 1378, 1477
HpyCH4III ACNGT 7 cut(s) 291, 563, 914, 977, 1040, 1193, 1578
HpyCH4IV ACGT 8 cut(s) 63, 593, 757, 832, 883, 895, 1147, 1375
HpyCH4V TGCA 7 cut(s) 392, 1052, 1336, 1354, 1403, 1537, 1568
HpyF3I CTNAG 5 cut(s) 324, 375, 519, 792, 1347
HpySE526I ACGT 8 cut(s) 63, 593, 757, 832, 883, 895, 1147, 1375
Hsp92I GRCGYC 1 cut(s) 238
HspAI GCGC 2 cut(s) 238, 344
KasI GGCGCC 1 cut(s) 237
Kpn2I TCCGGA 2 cut(s) 48, 221
KroI GCCGGC 1 cut(s) 176
KroNI GCCGGC 1 cut(s) 178
Kzo9I GATC 5 cut(s) 126, 412, 459, 1162, 1427
LmnI GCTCC 6 cut(s) 42, 76, 120, 152, 168, 169
Lsp1109I GCAGC 5 cut(s) 295, 301, 374, 445, 1303
LweI GCATC 7 cut(s) 341, 379, 662, 1323, 1333, 1390, 1441
MaeI CTAG 2 cut(s) 1320, 1464
MaeII ACGT 8 cut(s) 63, 593, 757, 832, 883, 895, 1147, 1375
MaeIII GTNAC 2 cut(s) 533, 884
MalI GATC 5 cut(s) 128, 414, 461, 1164, 1429
MboI GATC 5 cut(s) 126, 412, 459, 1162, 1427
MflI RGATCY 2 cut(s) 412, 1427
MhlI GDGCHC 6 cut(s) 117, 165, 355, 769, 895, 1147
MluCI AATT 4 cut(s) 256, 815, 1222, 1441
Mly113I GGCGCC 1 cut(s) 238
Mph1103I ATGCAT 2 cut(s) 394, 1570
MroI TCCGGA 2 cut(s) 48, 221
MroNI GCCGGC 1 cut(s) 176
MseI TTAA 5 cut(s) 429, 666, 729, 918, 1458
MslI CAYNNNNRTG 1 cut(s) 711
MspA1I CMGCKG 3 cut(s) 308, 314, 617
MspI CCGG 5 cut(s) 49, 177, 222, 347, 583
MspR9I CCNGG 3 cut(s) 167, 243, 348
Mva1269I GAATGC 5 cut(s) 670, 859, 922, 985, 1111
MvaI CCWGG 2 cut(s) 167, 243
NaeI GCCGGC 1 cut(s) 178
NarI GGCGCC 1 cut(s) 238
NciI CCSGG 1 cut(s) 348
NdeII GATC 5 cut(s) 126, 412, 459, 1162, 1427
NgoMIV GCCGGC 1 cut(s) 176
NlaIV GGNNCC 3 cut(s) 44, 239, 414
NmuCI GTSAC 1 cut(s) 533
NsiI ATGCAT 2 cut(s) 394, 1570
NspI RCATGY 2 cut(s) 1052, 1106
PaeI GCATGC 1 cut(s) 1052
PctI GAATGC 5 cut(s) 670, 859, 922, 985, 1111
PdiI GCCGGC 1 cut(s) 178
PfoI TCCNGGA 1 cut(s) 165
PkrI GCNGC 9 cut(s) 91, 248, 307, 310, 313, 316, 364, 435, 1318
PluTI GGCGCC 1 cut(s) 241
Ppu21I YACGTR 2 cut(s) 833, 884
PshAI GACNNNNGTC 1 cut(s) 1191
Psp124BI GAGCTC 2 cut(s) 117, 165
Psp1406I AACGTT 1 cut(s) 1375
Psp6I CCWGG 2 cut(s) 165, 241
PspGI CCWGG 2 cut(s) 165, 241
PspN4I GGNNCC 3 cut(s) 44, 239, 414
PstNI CAGNNNCTG 1 cut(s) 806
PsuI RGATCY 2 cut(s) 412, 1427
PvuII CAGCTG 1 cut(s) 617
RseI CAYNNNNRTG 1 cut(s) 711
SacI GAGCTC 2 cut(s) 117, 165
SaqAI TTAA 5 cut(s) 429, 666, 729, 918, 1458
SatI GCNGC 9 cut(s) 90, 247, 306, 309, 312, 315, 363, 434, 1317
Sau3AI GATC 5 cut(s) 126, 412, 459, 1162, 1427
ScrFI CCNGG 3 cut(s) 167, 243, 348
SduI GDGCHC 6 cut(s) 117, 165, 355, 769, 895, 1147
SfaNI GCATC 7 cut(s) 341, 379, 662, 1323, 1333, 1390, 1441
SfoI GGCGCC 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 711
SpeI ACTAGT 1 cut(s) 1463
SphI GCATGC 1 cut(s) 1052
Sse9I AATT 4 cut(s) 256, 815, 1222, 1441
SsiI CCGC 9 cut(s) 74, 90, 118, 246, 303, 306, 312, 321, 1434
SspDI GGCGCC 1 cut(s) 237
SspMI CTAG 2 cut(s) 1320, 1464
SstI GAGCTC 2 cut(s) 117, 165
StyD4I CCNGG 3 cut(s) 165, 241, 346
TaaI ACNGT 7 cut(s) 291, 563, 914, 977, 1040, 1193, 1578
TaiI ACGT 8 cut(s) 66, 596, 760, 835, 886, 898, 1150, 1378
TaqI TCGA 9 cut(s) 108, 132, 709, 898, 961, 1024, 1087, 1150, 1573
TasI AATT 4 cut(s) 256, 815, 1222, 1441
TauI GCSGC 4 cut(s) 92, 249, 308, 314
Tru1I TTAA 5 cut(s) 429, 666, 729, 918, 1458
Tru9I TTAA 5 cut(s) 429, 666, 729, 918, 1458
TseFI GTSAC 1 cut(s) 533
TseI GCWGC 5 cut(s) 308, 314, 362, 433, 1316
Tsp45I GTSAC 1 cut(s) 533
TspDTI ATGAA 8 cut(s) 702, 711, 765, 828, 1080, 1233, 1275, 1371
TspGWI ACGGA 2 cut(s) 146, 1505
XapI RAATTY 2 cut(s) 1222, 1441
XceI RCATGY 2 cut(s) 1052, 1106
XspI CTAG 2 cut(s) 1320, 1464
Zsp2I ATGCAT 2 cut(s) 394, 1570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.