Rroxscaffold_5G00357930

Pre-mRNA-splicing factor cwc25

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
37891130 .. 37897098
5969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00357930.1

Sequence Viewer

Length: 1647 bp
ATGATTGTAAGAGTTTCTGAACAAGAAGGGGTGGCACACCGGAGCCTCCGGAACATAGAGAACGTGTGGAAGGCGGAGCAGAAGCACGCCGCCGAAGAGAAGAAGCTCGACGAGCTCCGCAAACAGATCGTTGAAGAAAGAGAACGCTCCGAGTTCCGTGAGCTCCAGGAGCAAGCCGGCCTCGTCCCCAAGCAAGAGAGATTGGAGTTCCTCTACGATTCCGGATTGGCCGTAGGGCGCCCCGGCGGCTCTGATAATTTCAAGGAAGCCTTCACCAAAGCCGAAGAACCGTCTTCTTCCTCCGCAGCCGCCGCTGCCGCTGCCACCGCGAAGGAGGCATCATCGTCTGCGCCGGGGGCTCTGTTCGCAGCAGACAAGCCTCAGTCTGCCAATGATGCATGGAGGAAGCTTCACTCGGATCCTTTGCTTATGATTAAGCAGCGAGAGCAGGAAGCCCTCTCTCGGATCAAGAACAATCCTGTCCAGATGGCTATGATTCGCAAACAAGTTGAAGCAAAGAAGCCCAAAGAAAAAGAGCGTGACAAGAAGGAACGTCGGAAGAAACACCGTAAAGATTCTTCAAAGCATCGGAAGCAAACATCTGATTCAGAAGATGACACAGCTGATATGGAAAGGAGGAAGAATAATCATCGTAAGGCATCAAAATATGTTAAGCATTCAGAATCAGAGGATGAACCCCATGGAAAAGCGCATCGAAGTGAGAAGAACCATGTTAAGCAGTCAAATGTTGAAGATGAATCACGTTATAGAGCACGCCAAAGTGGGAAAACCCATGCCAAGTATTCAGATTCTGAAGGTGAATTGCGTAGCAAAGCACGTAGCAGTGATAAAAATCATGTTAGGCATTCAGATTTGGAGGATACATCACGTAACAGATCACATCATAGTGAGAAGAACCGTGTTAAGTATTCAGATTCAGAAGATGAGCCACATAACAGAGGGCGTGGAAGTGAGAAAAACCGTGTTAAGCATTCAGATTCAGAAGACAAGCTACACAACAGAGGTCGAAGTGAGAACAACCGTGGTAAGCATTCAGATTCAGAAGATGAGCTACATAACAGAAGAAGTCGAAGTGAGAGAAACCGTGGAAAGCATTCAGATTCAGAAGATGAACTACATAACAGAAGAAGTCGAGGTGAGAAGAATCGTGTCAAGCATTCAGATTCAGAAGACGGGCTACATAACAGAGCACGTCGAAGTGAGAAAGATGATGCTATAACAAGGGGAAAAGAGGATGGTCAAGGTATTGTCAAGGGAAAACATGAAAATTCAGAACAAGAAAACTATTCCATGAGAGGTCGAAATGAATCCCACAACAAGCGTCGGTTTGTTCCGCCTAAACTTTCAGAAGAAGAAAGAGCTGCTCGGCTAAAGGAGATGCAGATGGATGCTGAGTTGCATGAAGAACAAAGATGGAAACGTTTGAAGAAGGCTGACGAGAATGATGCACGGGAAGCTACCCAGGCTATCAGATCTGGCGGTAAGAATTTCTTGGATGCTGTTAAAACTAGTGTTTATGGTTCTGGGAAGGGAGGAAGCTCAACAATAGAGGAGAGTGTCCGTCGCCGAACCCATTATTTGCAGGGCAGGTCTGAAGCAGGTGAAAGCAATGCATTTCGACGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

548

Amino Acids

63.13

Weight (kDa)

9.63

Isoelectric Point (pI)

70.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cir_N PF10197 15 - 46 9.2e-09 N-terminal domain of CBF1 interacting co-repressor CIR
CWC25 PF12542 64 - 160 3.8e-15 Pre-mRNA splicing factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1610
Acc36I ACCTGC 2 cut(s) 1599, 1610
AccB1I GGYRCC 1 cut(s) 237
AccII CGCG 1 cut(s) 329
AccIII TCCGGA 2 cut(s) 48, 221
AclI AACGTT 1 cut(s) 1441
AclWI GGATC 3 cut(s) 413, 426, 473
AcoI YGGCCR 1 cut(s) 228
AcsI RAATTY 2 cut(s) 1288, 1507
AcuI CTGAAG 2 cut(s) 834, 1635
AcyI GRCGYC 1 cut(s) 238
AfiI CCNNNNNNNGG 1 cut(s) 462
AflIII ACRYGT 1 cut(s) 63
AgsI TTSAA 6 cut(s) 134, 262, 512, 582, 752, 1447
AhlI ACTAGT 1 cut(s) 1529
AjiI CACGTC 1 cut(s) 1214
AjnI CCWGG 2 cut(s) 165, 1482
Alw21I GWGCWC 4 cut(s) 117, 165, 775, 1213
AlwI GGATC 3 cut(s) 413, 426, 473
AlwNI CAGNNNCTG 1 cut(s) 812
Aor13HI TCCGGA 2 cut(s) 48, 221
AoxI GGCC 2 cut(s) 178, 228
ApeKI GCWGC 6 cut(s) 305, 314, 320, 368, 439, 1382
ApoI RAATTY 2 cut(s) 1288, 1507
Asp700I GAANNNNTTC 1 cut(s) 1114
AspLEI GCGC 3 cut(s) 240, 352, 712
AsuC2I CCSGG 2 cut(s) 243, 354
AsuHPI GGTGA 4 cut(s) 265, 830, 1169, 1634
BamHI GGATCC 1 cut(s) 418
BanI GGYRCC 1 cut(s) 237
BanII GRGCYC 3 cut(s) 117, 165, 361
BbsI GAAGAC 3 cut(s) 285, 1011, 1197
Bbv12I GWGCWC 4 cut(s) 117, 165, 775, 1213
BbvI GCAGC 6 cut(s) 301, 307, 317, 380, 451, 1369
BccI CCATC 4 cut(s) 481, 1250, 1399, 1428
BceAI ACGGC 1 cut(s) 215
BcgI CGANNNNNNTGC 4 cut(s) 109, 143, 1448, 1482
BciT130I CCWGG 2 cut(s) 167, 1484
BciVI GTATCC 1 cut(s) 874
BcnI CCSGG 2 cut(s) 243, 354
BcuI ACTAGT 1 cut(s) 1529
BfaI CTAG 1 cut(s) 1530
BfoI RGCGCY 1 cut(s) 241
BfuAI ACCTGC 2 cut(s) 1599, 1610
BfuI GTATCC 1 cut(s) 874
BglI GCCNNNNNGGC 1 cut(s) 246
BglII AGATCT 1 cut(s) 1493
Bme1390I CCNGG 4 cut(s) 167, 243, 354, 1484
BmgBI CACGTC 1 cut(s) 1214
BmiI GGNNCC 3 cut(s) 44, 239, 420
BmrFI CCNGG 4 cut(s) 167, 243, 354, 1484
BpiI GAAGAC 3 cut(s) 285, 1011, 1197
BpmI CTGGAG 1 cut(s) 149
BpuMI CCSGG 2 cut(s) 243, 354
BsaAI YACGTR 2 cut(s) 839, 890
BsaBI GATNNNNATC 1 cut(s) 852
BsaHI GRCGYC 1 cut(s) 238
BsaJI CCNNGG 6 cut(s) 241, 353, 700, 1042, 1105, 1482
BsaWI WCCGGW 3 cut(s) 39, 48, 221
Bsc4I CCNNNNNNNGG 1 cut(s) 462
Bse118I RCCGGY 1 cut(s) 176
Bse3DI GCAATG 1 cut(s) 1636
Bse8I GATNNNNATC 1 cut(s) 852
BseAI TCCGGA 2 cut(s) 48, 221
BseBI CCWGG 2 cut(s) 167, 1484
BseDI CCNNGG 6 cut(s) 241, 353, 700, 1042, 1105, 1482
BseGI GGATG 4 cut(s) 697, 1261, 1414, 1522
BseJI GATNNNNATC 1 cut(s) 852
BseLI CCNNNNNNNGG 1 cut(s) 462
BseMI GCAATG 1 cut(s) 1636
BseMII CTCAG 2 cut(s) 395, 1404
BseRI GAGGAG 1 cut(s) 1586
BseXI GCAGC 6 cut(s) 301, 307, 317, 380, 451, 1369
Bsh1236I CGCG 1 cut(s) 329
BshFI GGCC 2 cut(s) 180, 230
BshNI GGYRCC 1 cut(s) 237
BsiHKAI GWGCWC 4 cut(s) 117, 165, 775, 1213
BsiSI CCGG 6 cut(s) 40, 49, 177, 222, 243, 353
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 462
BsmFI GGGAC 1 cut(s) 170
BsmI GAATGC 6 cut(s) 676, 865, 991, 1051, 1114, 1177
BsnI GGCC 2 cut(s) 180, 230
Bsp1286I GDGCHC 5 cut(s) 117, 165, 361, 775, 1213
Bsp13I TCCGGA 2 cut(s) 48, 221
Bsp143I GATC 5 cut(s) 126, 418, 465, 896, 1493
Bsp19I CCATGG 1 cut(s) 700
BspANI GGCC 2 cut(s) 180, 230
BspCNI CTCAG 2 cut(s) 394, 1405
BspEI TCCGGA 2 cut(s) 48, 221
BspFNI CGCG 1 cut(s) 329
BspLI GGNNCC 3 cut(s) 44, 239, 420
BspMI ACCTGC 2 cut(s) 1599, 1610
BspPI GGATC 3 cut(s) 413, 426, 473
BspT107I GGYRCC 1 cut(s) 237
BsrDI GCAATG 1 cut(s) 1636
BsrFI RCCGGY 1 cut(s) 176
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 6 cut(s) 241, 353, 700, 1042, 1105, 1482
BssMI GATC 5 cut(s) 126, 418, 465, 896, 1493
BssNI GRCGYC 1 cut(s) 238
BssT1I CCWWGG 1 cut(s) 700
Bst2UI CCWGG 2 cut(s) 167, 1484
Bst4CI ACNGT 7 cut(s) 291, 569, 920, 983, 1043, 1106, 1644
Bst6I CTCTTC 1 cut(s) 90
BstACI GRCGYC 1 cut(s) 238
BstBAI YACGTR 2 cut(s) 839, 890
BstC8I GCNNGC 4 cut(s) 87, 174, 178, 775
BstDEI CTNAG 2 cut(s) 381, 1413
BstDSI CCRYGG 3 cut(s) 700, 1042, 1105
BstF5I GGATG 4 cut(s) 697, 1261, 1414, 1522
BstFNI CGCG 1 cut(s) 329
BstH2I RGCGCY 1 cut(s) 241
BstHHI GCGC 3 cut(s) 240, 352, 712
BstKTI GATC 5 cut(s) 129, 421, 468, 899, 1496
BstMBI GATC 5 cut(s) 126, 418, 465, 896, 1493
BstNI CCWGG 2 cut(s) 167, 1484
BstSCI CCNGG 4 cut(s) 165, 241, 352, 1482
BstUI CGCG 1 cut(s) 329
BstV1I GCAGC 6 cut(s) 301, 307, 317, 380, 451, 1369
BstV2I GAAGAC 3 cut(s) 285, 1011, 1197
BstX2I RGATCY 2 cut(s) 418, 1493
BstYI RGATCY 2 cut(s) 418, 1493
BsuI GTATCC 1 cut(s) 874
BsuRI GGCC 2 cut(s) 180, 230
BtgI CCRYGG 3 cut(s) 700, 1042, 1105
BtrI CACGTC 1 cut(s) 1214
BtsCI GGATG 4 cut(s) 697, 1261, 1414, 1522
BtsI GCAGTG 1 cut(s) 850
BtsIMutI CAGTG 1 cut(s) 850
BveI ACCTGC 2 cut(s) 1599, 1610
Cac8I GCNNGC 4 cut(s) 87, 174, 178, 775
CaiI CAGNNNCTG 1 cut(s) 812
CfoI GCGC 3 cut(s) 240, 352, 712
Cfr10I RCCGGY 1 cut(s) 176
CseI GACGC 1 cut(s) 1331
CviAII CATG 8 cut(s) 399, 701, 731, 794, 857, 1283, 1312, 1421
DdeI CTNAG 2 cut(s) 381, 1413
DinI GGCGCC 1 cut(s) 239
DpnI GATC 5 cut(s) 128, 420, 467, 898, 1495
DpnII GATC 5 cut(s) 126, 418, 465, 896, 1493
EaeI YGGCCR 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
EciI GGCGGA 2 cut(s) 89, 1344
Ecl136II GAGCTC 2 cut(s) 115, 163
Eco130I CCWWGG 1 cut(s) 700
Eco24I GRGCYC 3 cut(s) 117, 165, 361
Eco53kI GAGCTC 2 cut(s) 115, 163
Eco57I CTGAAG 2 cut(s) 834, 1635
EcoICRI GAGCTC 2 cut(s) 115, 163
EcoRII CCWGG 2 cut(s) 165, 1482
EcoT14I CCWWGG 1 cut(s) 700
EcoT22I ATGCAT 2 cut(s) 400, 1636
EcoT38I GRGCYC 3 cut(s) 117, 165, 361
EgeI GGCGCC 1 cut(s) 239
EheI GGCGCC 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 700
FaeI CATG 8 cut(s) 402, 704, 734, 797, 860, 1286, 1315, 1424
FalI AAGNNNNNCTT 4 cut(s) 254, 286, 1496, 1528
FaqI GGGAC 1 cut(s) 170
FatI CATG 8 cut(s) 398, 700, 730, 793, 856, 1282, 1311, 1420
FokI GGATG 4 cut(s) 704, 1268, 1421, 1529
FriOI GRGCYC 3 cut(s) 117, 165, 361
FspBI CTAG 1 cut(s) 1530
GlaI GCGC 3 cut(s) 239, 351, 711
GsuI CTGGAG 1 cut(s) 149
HaeII RGCGCY 1 cut(s) 241
HaeIII GGCC 2 cut(s) 180, 230
HapII CCGG 6 cut(s) 40, 49, 177, 222, 243, 353
HgaI GACGC 1 cut(s) 1331
HhaI GCGC 3 cut(s) 240, 352, 712
Hin1I GRCGYC 1 cut(s) 238
Hin1II CATG 8 cut(s) 402, 704, 734, 797, 860, 1286, 1315, 1424
Hin6I GCGC 3 cut(s) 238, 350, 710
HinP1I GCGC 3 cut(s) 238, 350, 710
HindIII AAGCTT 1 cut(s) 407
HpaII CCGG 6 cut(s) 40, 49, 177, 222, 243, 353
HphI GGTGA 4 cut(s) 265, 830, 1169, 1634
Hpy188III TCNNGA 4 cut(s) 49, 222, 469, 484
Hpy99I CGWCG 6 cut(s) 113, 558, 1218, 1347, 1587, 1644
HpyAV CCTTC 8 cut(s) 20, 64, 280, 325, 541, 809, 1444, 1543
HpyCH4III ACNGT 7 cut(s) 291, 569, 920, 983, 1043, 1106, 1644
HpyCH4IV ACGT 7 cut(s) 63, 553, 763, 838, 889, 1213, 1441
HpyCH4V TGCA 6 cut(s) 398, 1402, 1420, 1469, 1603, 1634
HpyF3I CTNAG 2 cut(s) 381, 1413
HpySE526I ACGT 7 cut(s) 63, 553, 763, 838, 889, 1213, 1441
Hsp92I GRCGYC 1 cut(s) 238
Hsp92II CATG 8 cut(s) 402, 704, 734, 797, 860, 1286, 1315, 1424
HspAI GCGC 3 cut(s) 238, 350, 710
KasI GGCGCC 1 cut(s) 237
Kpn2I TCCGGA 2 cut(s) 48, 221
KroI GCCGGC 1 cut(s) 176
KroNI GCCGGC 1 cut(s) 178
Kzo9I GATC 5 cut(s) 126, 418, 465, 896, 1493
LmnI GCTCC 6 cut(s) 42, 76, 120, 152, 168, 169
Lsp1109I GCAGC 6 cut(s) 301, 307, 317, 380, 451, 1369
MaeI CTAG 1 cut(s) 1530
MaeII ACGT 7 cut(s) 63, 553, 763, 838, 889, 1213, 1441
MaeIII GTNAC 2 cut(s) 539, 890
MalI GATC 5 cut(s) 128, 420, 467, 898, 1495
MboI GATC 5 cut(s) 126, 418, 465, 896, 1493
MflI RGATCY 2 cut(s) 418, 1493
MhlI GDGCHC 5 cut(s) 117, 165, 361, 775, 1213
MluCI AATT 4 cut(s) 256, 821, 1288, 1507
Mly113I GGCGCC 1 cut(s) 238
MmeI TCCRAC 1 cut(s) 536
Mph1103I ATGCAT 2 cut(s) 400, 1636
MroI TCCGGA 2 cut(s) 48, 221
MroNI GCCGGC 1 cut(s) 176
MroXI GAANNNNTTC 1 cut(s) 1114
MseI TTAA 6 cut(s) 435, 672, 735, 924, 987, 1524
MslI CAYNNNNRTG 2 cut(s) 717, 906
MspA1I CMGCKG 3 cut(s) 314, 320, 623
MspI CCGG 6 cut(s) 40, 49, 177, 222, 243, 353
MspR9I CCNGG 4 cut(s) 167, 243, 354, 1484
Mva1269I GAATGC 6 cut(s) 676, 865, 991, 1051, 1114, 1177
MvaI CCWGG 2 cut(s) 167, 1484
MvnI CGCG 1 cut(s) 329
NaeI GCCGGC 1 cut(s) 178
NarI GGCGCC 1 cut(s) 238
NciI CCSGG 2 cut(s) 243, 354
NcoI CCATGG 1 cut(s) 700
NdeII GATC 5 cut(s) 126, 418, 465, 896, 1493
NgoMIV GCCGGC 1 cut(s) 176
NlaIII CATG 8 cut(s) 402, 704, 734, 797, 860, 1286, 1315, 1424
NlaIV GGNNCC 3 cut(s) 44, 239, 420
NmeAIII GCCGAG 1 cut(s) 1366
NmuCI GTSAC 1 cut(s) 539
NsiI ATGCAT 2 cut(s) 400, 1636
PaqCI CACCTGC 1 cut(s) 1610
PctI GAATGC 6 cut(s) 676, 865, 991, 1051, 1114, 1177
PdiI GCCGGC 1 cut(s) 178
PdmI GAANNNNTTC 1 cut(s) 1114
PfoI TCCNGGA 1 cut(s) 165
PluTI GGCGCC 1 cut(s) 241
Ppu21I YACGTR 2 cut(s) 839, 890
Psp124BI GAGCTC 2 cut(s) 117, 165
Psp1406I AACGTT 1 cut(s) 1441
Psp6I CCWGG 2 cut(s) 165, 1482
PspGI CCWGG 2 cut(s) 165, 1482
PspN4I GGNNCC 3 cut(s) 44, 239, 420
PstNI CAGNNNCTG 1 cut(s) 812
PsuI RGATCY 2 cut(s) 418, 1493
PvuII CAGCTG 1 cut(s) 623
RseI CAYNNNNRTG 2 cut(s) 717, 906
SacI GAGCTC 2 cut(s) 117, 165
SaqAI TTAA 6 cut(s) 435, 672, 735, 924, 987, 1524
Sau3AI GATC 5 cut(s) 126, 418, 465, 896, 1493
ScrFI CCNGG 4 cut(s) 167, 243, 354, 1484
SduI GDGCHC 5 cut(s) 117, 165, 361, 775, 1213
SfoI GGCGCC 1 cut(s) 239
SmiMI CAYNNNNRTG 2 cut(s) 717, 906
SpeI ACTAGT 1 cut(s) 1529
Sse9I AATT 4 cut(s) 256, 821, 1288, 1507
SspDI GGCGCC 1 cut(s) 237
SspMI CTAG 1 cut(s) 1530
SstI GAGCTC 2 cut(s) 117, 165
StyD4I CCNGG 4 cut(s) 165, 241, 352, 1482
StyI CCWWGG 1 cut(s) 700
TaaI ACNGT 7 cut(s) 291, 569, 920, 983, 1043, 1106, 1644
TaiI ACGT 7 cut(s) 66, 556, 766, 841, 892, 1216, 1444
TaqI TCGA 8 cut(s) 108, 715, 1027, 1090, 1153, 1216, 1321, 1639
TasI AATT 4 cut(s) 256, 821, 1288, 1507
TauI GCSGC 5 cut(s) 92, 249, 311, 314, 320
Tru1I TTAA 6 cut(s) 435, 672, 735, 924, 987, 1524
Tru9I TTAA 6 cut(s) 435, 672, 735, 924, 987, 1524
TscAI CASTG 1 cut(s) 850
TseFI GTSAC 1 cut(s) 539
TseI GCWGC 6 cut(s) 305, 314, 320, 368, 439, 1382
Tsp45I GTSAC 1 cut(s) 539
TspDTI ATGAA 6 cut(s) 708, 771, 1146, 1299, 1341, 1437
TspGWI ACGGA 2 cut(s) 146, 1571
TspRI CASTG 1 cut(s) 850
XapI RAATTY 2 cut(s) 1288, 1507
XmnI GAANNNNTTC 1 cut(s) 1114
XspI CTAG 1 cut(s) 1530
Zsp2I ATGCAT 2 cut(s) 400, 1636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.