Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0006065

Physical Location & Seq

Genomic Coordinates Forward (+)

45685032 .. 45688520

Gene Structure 3489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG183500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGGGAATATTACTGAAGAGAAATGTTCAGTTTGCAATAATCTAACCTTTGTATATTTCTTTAACCAGGTTGAAGCAAAGAAGCCCAAAGAAAAAGAGCGTGACAAGAAGGAACGTCGGAAGAAACACCGTAAAGATTCTTCAAAGCATCGGAAGCAAACATCTGATTCAGAAGATGACAGAGCTGATATGGAAAGGAGGAAGAATAGTCATCGTAAGGCATCAAAATATGTTAAGCATTCAGAATCAGAGGATGAACCCCATGAAAAAGCGCATCGAAGTGAGAAGAACCATGTTAAGCAGTCAAATGTTGAAGATGAATCTCGTTATAGAGCACGCCAAAGTGGGAAAACCCATGCCAAGTATTCAGATTCTGAAGATGAATTGCGTAGCAAAGCACGTAGCAGTGATAAAAATCATGTTAGGCATTCAGATTTGGAGGATACATCACGTAACAGATCACATCGTAGTGAGAAGAACCGTGTTAAGTATTCAGATTCAGAAGATGAGCTACATAACAGAGGGCGTGGAAGTGAGAAAAACCGTGTTAAGCATTCAGATTCAGAAGACAAGCTACACAACAGAGGTCGCAGTGAGAACAACCGTGGTAAGCATTCAGATTCAGAAGATGAGCTACATAACAGAAGAAGTCGAAGTGAGAGAAACCGTGGAAAGCATTCAGATTCAGAAGATGAACTACATAACAGAAGAGGTCGAGGTGAGAAGAACCGTGTCAAGCATTCAGATACAGAAGACGGGCTACATAACAGAGCACGTCGAAGTGAGAAAGATGATGCTATAACAAGGGGAAAAGAGGACGGTCAAGGTATTGTCAAGGGAAAACATGAAAATTCAGAACAAGAAAACTATTCCATGAGAGGTCGAAATGAATCCCACAACAAGCGTCGGTTTGTTCCGCCTAAACTTTCAGAAGAAGAAAGAGCTGCTCGGCTAAAGGAGATGCAGATGGATGCTGAGTTGCATGAAGAACAAAGATGGAAACGTTTGAAGAAGGCTGACGAGAATGATGCACGGGAAGCTACCCAGGCTATCAGATCTGGCGGTAAGAATTTCTTGGATGCTGTTAAAACTAGTGTTTATGGTTCTGGGAAGGGAGGAAGCTCAACAATAGAGGAGAGTGTCCGTCGCCGAACCCATTATTTGCAGGGCAGGTCTGAAGCAGGTGAAAGCAATGCATTTCGACGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CWC25 Cir_N

Protein Analysis

402

Amino Acids

47.15

Weight (kDa)

9.68

Isoelectric Point (pI)

71.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44195 AT2G44200
fragaria_vesca	FvH4_4g13451
malus_domestica	MD04G1014200.v1.1
prunus_persica	Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161500_v2.0.a1 Prupe.1G161500_v2.0.a1 Prupe.1G161500_v2.0.a1 Prupe.1G162300_v2.0.a1
pyrus_communis	pycom04g01100
rosa_chinensis	RchiOBHm_Chr4g0414011
rosa_laevigata	RLG00000008185
rosa_multiflora	Rmu_sc0003264.1_g000022 Rmu_sc0006428.1_g000008
rosa_roxburghii	Rroxscaffold_5G00357930
rosa_rugosa	Rorug04G0125000
rosa_samantha	Rh4AG183500 Rh4BG183000 Rh4CG195500 Rh4DG178800
rosa_wichuraiana	Rw4G015600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1172
Acc36I	ACCTGC	2 cut(s)	1161, 1172
AciI	CCGC	2 cut(s)	917, 1062
AclI	AACGTT	1 cut(s)	1003
AcsI	RAATTY	2 cut(s)	850, 1069
AcuI	CTGAAG	3 cut(s)	36, 396, 1197
AgsI	TTSAA	4 cut(s)	74, 144, 314, 1009
AhlI	ACTAGT	1 cut(s)	1091
AjiI	CACGTC	1 cut(s)	776
AjnI	CCWGG	2 cut(s)	66, 1044
AluBI	AGCT	7 cut(s)	185, 511, 574, 634, 944, 1040, 1122
AluI	AGCT	7 cut(s)	185, 511, 574, 634, 944, 1040, 1122
Alw21I	GWGCWC	2 cut(s)	337, 775
AlwNI	CAGNNNCTG	1 cut(s)	374
ApeKI	GCWGC	1 cut(s)	944
ApoI	RAATTY	2 cut(s)	850, 1069
Asp700I	GAANNNNTTC	1 cut(s)	676
AspLEI	GCGC	1 cut(s)	274
AsuHPI	GGTGA	2 cut(s)	731, 1196
BbsI	GAAGAC	2 cut(s)	573, 759
Bbv12I	GWGCWC	2 cut(s)	337, 775
BbvI	GCAGC	1 cut(s)	931
BccI	CCATC	2 cut(s)	961, 990
BcgI	CGANNNNNNTGC	2 cut(s)	1010, 1044
BciT130I	CCWGG	2 cut(s)	68, 1046
BciVI	GTATCC	1 cut(s)	436
BcuI	ACTAGT	1 cut(s)	1091
BfaI	CTAG	1 cut(s)	1092
BfuAI	ACCTGC	2 cut(s)	1161, 1172
BfuI	GTATCC	1 cut(s)	436
BglII	AGATCT	1 cut(s)	1055
BisI	GCNGC	1 cut(s)	945
BlsI	GCNGC	1 cut(s)	946
Bme1390I	CCNGG	2 cut(s)	68, 1046
BmgBI	CACGTC	1 cut(s)	776
BmrFI	CCNGG	2 cut(s)	68, 1046
BmsI	GCATC	8 cut(s)	157, 230, 283, 784, 951, 961, 1018, 1069
BpiI	GAAGAC	2 cut(s)	573, 759
BsaAI	YACGTR	2 cut(s)	401, 452
BsaBI	GATNNNNATC	1 cut(s)	414
BsaJI	CCNNGG	3 cut(s)	604, 667, 1044
Bse3DI	GCAATG	1 cut(s)	1198
Bse8I	GATNNNNATC	1 cut(s)	414
BseBI	CCWGG	2 cut(s)	68, 1046
BseDI	CCNNGG	3 cut(s)	604, 667, 1044
BseGI	GGATG	3 cut(s)	259, 976, 1084
BseJI	GATNNNNATC	1 cut(s)	414
BseMI	GCAATG	1 cut(s)	1198
BseMII	CTCAG	1 cut(s)	966
BseRI	GAGGAG	1 cut(s)	1148
BseXI	GCAGC	1 cut(s)	931
BsiHKAI	GWGCWC	2 cut(s)	337, 775
BsmI	GAATGC	6 cut(s)	238, 427, 553, 613, 676, 739
Bsp1286I	GDGCHC	2 cut(s)	337, 775
Bsp143I	GATC	2 cut(s)	458, 1055
BspACI	CCGC	2 cut(s)	917, 1062
BspCNI	CTCAG	1 cut(s)	967
BspMI	ACCTGC	2 cut(s)	1161, 1172
BsrDI	GCAATG	1 cut(s)	1198
BssECI	CCNNGG	3 cut(s)	604, 667, 1044
BssMI	GATC	2 cut(s)	458, 1055
Bst2UI	CCWGG	2 cut(s)	68, 1046
Bst4CI	ACNGT	8 cut(s)	131, 482, 545, 605, 668, 731, 821, 1206
Bst6I	CTCTTC	2 cut(s)	12, 703
BstBAI	YACGTR	2 cut(s)	401, 452
BstC8I	GCNNGC	1 cut(s)	337
BstDEI	CTNAG	1 cut(s)	975
BstDSI	CCRYGG	2 cut(s)	604, 667
BstF5I	GGATG	3 cut(s)	259, 976, 1084
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	2 cut(s)	461, 1058
BstMBI	GATC	2 cut(s)	458, 1055
BstMWI	GCNNNNNNNGC	3 cut(s)	154, 1037, 1046
BstNI	CCWGG	2 cut(s)	68, 1046
BstSCI	CCNGG	2 cut(s)	66, 1044
BstV1I	GCAGC	1 cut(s)	931
BstV2I	GAAGAC	2 cut(s)	573, 759
BstX2I	RGATCY	1 cut(s)	1055
BstYI	RGATCY	1 cut(s)	1055
BsuI	GTATCC	1 cut(s)	436
BtgI	CCRYGG	2 cut(s)	604, 667
BtrI	CACGTC	1 cut(s)	776
BtsCI	GGATG	3 cut(s)	259, 976, 1084
BtsI	GCAGTG	2 cut(s)	412, 598
BtsIMutI	CAGTG	2 cut(s)	412, 598
BveI	ACCTGC	2 cut(s)	1161, 1172
Cac8I	GCNNGC	1 cut(s)	337
CaiI	CAGNNNCTG	1 cut(s)	374
CfoI	GCGC	1 cut(s)	274
CseI	GACGC	1 cut(s)	893
CsiI	ACCWGGT	1 cut(s)	66
CviAII	CATG	7 cut(s)	263, 293, 356, 419, 845, 874, 983
DdeI	CTNAG	1 cut(s)	975
DpnI	GATC	2 cut(s)	460, 1057
DpnII	GATC	2 cut(s)	458, 1055
Eam1104I	CTCTTC	2 cut(s)	12, 703
EarI	CTCTTC	2 cut(s)	12, 703
EciI	GGCGGA	1 cut(s)	906
Eco57I	CTGAAG	3 cut(s)	36, 396, 1197
EcoRII	CCWGG	2 cut(s)	66, 1044
EcoT22I	ATGCAT	1 cut(s)	1198
FaeI	CATG	7 cut(s)	266, 296, 359, 422, 848, 877, 986
FalI	AAGNNNNNCTT	2 cut(s)	1058, 1090
FatI	CATG	7 cut(s)	262, 292, 355, 418, 844, 873, 982
Fnu4HI	GCNGC	1 cut(s)	945
FokI	GGATG	3 cut(s)	266, 983, 1091
Fsp4HI	GCNGC	1 cut(s)	945
FspBI	CTAG	1 cut(s)	1092
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	1 cut(s)	945
HgaI	GACGC	1 cut(s)	893
HhaI	GCGC	1 cut(s)	274
Hin1II	CATG	7 cut(s)	266, 296, 359, 422, 848, 877, 986
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HphI	GGTGA	2 cut(s)	731, 1196
Hpy99I	CGWCG	5 cut(s)	120, 780, 909, 1149, 1206
HpyAV	CCTTC	3 cut(s)	103, 1006, 1105
HpyCH4III	ACNGT	8 cut(s)	131, 482, 545, 605, 668, 731, 821, 1206
HpyCH4IV	ACGT	5 cut(s)	115, 400, 451, 775, 1003
HpyCH4V	TGCA	6 cut(s)	36, 964, 982, 1031, 1165, 1196
HpyF10VI	GCNNNNNNNGC	3 cut(s)	154, 1037, 1046
HpyF3I	CTNAG	1 cut(s)	975
HpySE526I	ACGT	5 cut(s)	115, 400, 451, 775, 1003
Hsp92II	CATG	7 cut(s)	266, 296, 359, 422, 848, 877, 986
HspAI	GCGC	1 cut(s)	272
Kzo9I	GATC	2 cut(s)	458, 1055
LpnPI	CCDG	9 cut(s)	53, 80, 1031, 1044, 1058, 1092, 1151, 1156, 1167
Lsp1109I	GCAGC	1 cut(s)	931
LweI	GCATC	8 cut(s)	157, 230, 283, 784, 951, 961, 1018, 1069
MabI	ACCWGGT	1 cut(s)	66
MaeI	CTAG	1 cut(s)	1092
MaeII	ACGT	5 cut(s)	115, 400, 451, 775, 1003
MaeIII	GTNAC	2 cut(s)	101, 452
MalI	GATC	2 cut(s)	460, 1057
MboI	GATC	2 cut(s)	458, 1055
MflI	RGATCY	1 cut(s)	1055
MhlI	GDGCHC	2 cut(s)	337, 775
MluCI	AATT	3 cut(s)	383, 850, 1069
MmeI	TCCRAC	1 cut(s)	98
Mph1103I	ATGCAT	1 cut(s)	1198
MroXI	GAANNNNTTC	1 cut(s)	676
MseI	TTAA	6 cut(s)	63, 234, 297, 486, 549, 1086
MslI	CAYNNNNRTG	2 cut(s)	279, 468
MspR9I	CCNGG	2 cut(s)	68, 1046
Mva1269I	GAATGC	6 cut(s)	238, 427, 553, 613, 676, 739
MvaI	CCWGG	2 cut(s)	68, 1046
MwoI	GCNNNNNNNGC	3 cut(s)	154, 1037, 1046
NdeII	GATC	2 cut(s)	458, 1055
NlaIII	CATG	7 cut(s)	266, 296, 359, 422, 848, 877, 986
NmeAIII	GCCGAG	1 cut(s)	928
NmuCI	GTSAC	1 cut(s)	101
NsiI	ATGCAT	1 cut(s)	1198
PaqCI	CACCTGC	1 cut(s)	1172
PctI	GAATGC	6 cut(s)	238, 427, 553, 613, 676, 739
PdmI	GAANNNNTTC	1 cut(s)	676
PkrI	GCNGC	1 cut(s)	946
Ppu21I	YACGTR	2 cut(s)	401, 452
Psp1406I	AACGTT	1 cut(s)	1003
Psp6I	CCWGG	2 cut(s)	66, 1044
PspGI	CCWGG	2 cut(s)	66, 1044
PstNI	CAGNNNCTG	1 cut(s)	374
PsuI	RGATCY	1 cut(s)	1055
RseI	CAYNNNNRTG	2 cut(s)	279, 468
SaqAI	TTAA	6 cut(s)	63, 234, 297, 486, 549, 1086
SatI	GCNGC	1 cut(s)	945
Sau3AI	GATC	2 cut(s)	458, 1055
ScrFI	CCNGG	2 cut(s)	68, 1046
SduI	GDGCHC	2 cut(s)	337, 775
SexAI	ACCWGGT	1 cut(s)	66
SfaNI	GCATC	8 cut(s)	157, 230, 283, 784, 951, 961, 1018, 1069
SmiMI	CAYNNNNRTG	2 cut(s)	279, 468
SpeI	ACTAGT	1 cut(s)	1091
Sse9I	AATT	3 cut(s)	383, 850, 1069
SsiI	CCGC	2 cut(s)	917, 1062
SspI	AATATT	1 cut(s)	10
SspMI	CTAG	1 cut(s)	1092
StyD4I	CCNGG	2 cut(s)	66, 1044
TaaI	ACNGT	8 cut(s)	131, 482, 545, 605, 668, 731, 821, 1206
TaiI	ACGT	5 cut(s)	118, 403, 454, 778, 1006
TaqI	TCGA	6 cut(s)	277, 652, 715, 778, 883, 1201
TasI	AATT	3 cut(s)	383, 850, 1069
Tru1I	TTAA	6 cut(s)	63, 234, 297, 486, 549, 1086
Tru9I	TTAA	6 cut(s)	63, 234, 297, 486, 549, 1086
TscAI	CASTG	2 cut(s)	412, 598
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	1 cut(s)	944
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	8 cut(s)	270, 279, 333, 396, 708, 861, 903, 999
TspGWI	ACGGA	1 cut(s)	1133
TspRI	CASTG	2 cut(s)	412, 598
XapI	RAATTY	2 cut(s)	850, 1069
XmnI	GAANNNNTTC	1 cut(s)	676
XspI	CTAG	1 cut(s)	1092
Zsp2I	ATGCAT	1 cut(s)	1198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.