Rh4DG178800

Pre-mRNA-splicing factor cwc25

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
35629561 .. 35632112
2552 bp
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UTR
Exon/CDS
Intron
Rh4DG178800.1

Sequence Viewer

Length: 1584 bp
ATGGCTTTGAAGTTTCTGAACAAGAAGGGGTGGCACACCGGGAGCCTCCGGAACATAGAGAACGTGTGGAAGGCGGAGCAGAAGCACGCCGCCGAAGAAAAGAAGCTCGACGAGCTCCGCAAACAGATCGTCGAAGAAAGAGAACGATCCGAGTTCCGTGAGCTCCAGGAGCAAGCCGGCCTCGTCCCCAAGCAAGAGCGATTGGAGTTCCTCTACGATTCCGGATTGGCCGTAGGGCGCCCCGGCGGCTCTGATAATTTCAAGGAAGCCTTTACCAAAGCCGAAGAACCGTCTTCTTCCGCCGCCGCAGCCGCCGCCGCCACTGCGAAGGAGGCATCATCGTCTGCGCCGGGGGCTCTGTTCGCAGCAGACAAGCCTCAGTCTGCCAATGATGCATGGAGGAAGCTTCACTCGGATCCTTTGCTTATGATTAAGCAGCGAGAGCAGGAAGCCCTCTCTCGGATCAAGAACAATCCTGTCCAGATGGCTATGATTCGCAAACAAGTTGAAGCAAAGAAGCCTAAGGAAAAAGAGCGTGACAAGAAGGAACATCGGAAGAAACACCGTAAAGATTCTTCAAAGCACCGGAAGCAAACGTCTGATTCAGAAGATGACACAGCTGATATGGAAAGGAGGAAGAATAGTCATCGTAAGGCATCAAAATATGTTAAGCATTCAGAATCAGAGGATGAACCACATAAAAAAGCACATCGAAGTGAGAAGAACCATGTTAAGCAGTCAAATGTTGAAGATGAATCACGTTATAGAGCACGCCAAAGTGGGAAAACCCATGCTAAGTATTCAGATTCTGAAGATGAATTCCGTAGCAAAGCACGTAGTAGTGATAAAAACCATGTTAGGCATTCAGATTTGGAGGATACATCACGTAACAGAGCACGTCGAAGTGAGAAGAACCGTGTTAAGCATTCAGATTCAGAAGATGAGCTACATAACAGAAGAAGTCGAAGTGAGAAGAACCGTGGCAAGCATTCAGATTCAGAAGATGAGCTACATAACAGAAGAAGTCGAAGTGAGAGAAACCGTGGTAAGCATTCAGATTCAGAAGATGAACTACATAACAGAACAAGTCGAAGTGAGAAGAAGCATGTCAAGCATTCAGATTCAGAAGACGGGCTACATAACAGAGCACGTCGAAGTGAGACAGATCATGCCATAACAAGGGCAAAAGACGACGGTCAAGGTATTGTCAAGGGAAGACATGAAAATTCAGAACAAGAAAACTATTCCATGAGAGGTCGAAATGAATCCCACAACAAGCGTCGGTTTGTTCCACCTAAACTTTCAGAAGAAGAAAGAGCTGCTAGGTTAAAGGAGATGCAGATGGATGCTGAGTTGCATGAAGAACAAAGATGGAAACGTTTGAAGAAGGCTGACGAGAATGATGCACGTGAAGCTACCCAAGCTATCAGATCTGGCGGTAAGAATTTCTTGGATGCTGTTAAAACTAGTGTTTATGGTTCTGGGAAGGGAGGAAGCTCAACAATAGAGGAGAGTGTCCGTCGCAGAACACATTATTTGCAGGGCAGGTCTGAAGCAAGTGAAAGCAATGCATTTCGACGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

527

Amino Acids

60.98

Weight (kDa)

9.72

Isoelectric Point (pI)

73.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cir_N PF10197 11 - 46 4.8e-14 N-terminal domain of CBF1 interacting co-repressor CIR
CWC25 PF12542 64 - 159 4.6e-15 Pre-mRNA splicing factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1536
AccB1I GGYRCC 1 cut(s) 237
AccIII TCCGGA 2 cut(s) 48, 221
AclI AACGTT 1 cut(s) 1378
AclWI GGATC 4 cut(s) 141, 410, 423, 470
AcoI YGGCCR 1 cut(s) 228
AcsI RAATTY 3 cut(s) 818, 1225, 1444
AcuI CTGAAG 2 cut(s) 831, 1572
AcvI CACGTG 1 cut(s) 1409
AcyI GRCGYC 1 cut(s) 238
AfiI CCNNNNNNNGG 2 cut(s) 459, 1179
AflIII ACRYGT 1 cut(s) 63
AgsI TTSAA 6 cut(s) 10, 262, 509, 579, 749, 1384
AhlI ACTAGT 1 cut(s) 1466
AjiI CACGTC 2 cut(s) 899, 1151
AjnI CCWGG 1 cut(s) 165
Alw21I GWGCWC 5 cut(s) 117, 165, 772, 898, 1150
Alw26I GTCTC 1 cut(s) 1154
AlwI GGATC 4 cut(s) 141, 410, 423, 470
AlwNI CAGNNNCTG 1 cut(s) 809
Aor13HI TCCGGA 2 cut(s) 48, 221
AoxI GGCC 2 cut(s) 178, 228
ApeKI GCWGC 4 cut(s) 308, 365, 436, 1319
ApoI RAATTY 3 cut(s) 818, 1225, 1444
ArsI GACNNNNNNTTYG 2 cut(s) 114, 146
AspLEI GCGC 2 cut(s) 240, 349
AsuC2I CCSGG 3 cut(s) 40, 243, 351
AxyI CCTNAGG 1 cut(s) 522
BamHI GGATCC 1 cut(s) 415
BanI GGYRCC 1 cut(s) 237
BanII GRGCYC 3 cut(s) 117, 165, 358
BbrPI CACGTG 1 cut(s) 1409
BbsI GAAGAC 3 cut(s) 285, 1134, 1222
Bbv12I GWGCWC 5 cut(s) 117, 165, 772, 898, 1150
BbvI GCAGC 4 cut(s) 320, 377, 448, 1306
BccI CCATC 3 cut(s) 478, 1336, 1365
BceAI ACGGC 1 cut(s) 215
BcgI CGANNNNNNTGC 4 cut(s) 109, 143, 1385, 1419
BciT130I CCWGG 1 cut(s) 167
BciVI GTATCC 1 cut(s) 871
BcnI CCSGG 3 cut(s) 40, 243, 351
BcoDI GTCTC 1 cut(s) 1154
BcuI ACTAGT 1 cut(s) 1466
BfaI CTAG 2 cut(s) 1323, 1467
BfoI RGCGCY 1 cut(s) 241
BfuAI ACCTGC 1 cut(s) 1536
BfuI GTATCC 1 cut(s) 871
BglI GCCNNNNNGGC 1 cut(s) 246
BglII AGATCT 1 cut(s) 1430
Bme1390I CCNGG 4 cut(s) 40, 167, 243, 351
BmgBI CACGTC 2 cut(s) 899, 1151
BmiI GGNNCC 3 cut(s) 44, 239, 417
BmrFI CCNGG 4 cut(s) 40, 167, 243, 351
BmsI GCATC 7 cut(s) 344, 382, 665, 1326, 1336, 1393, 1444
BoxI GACNNNNGTC 1 cut(s) 1194
BpiI GAAGAC 3 cut(s) 285, 1134, 1222
BpmI CTGGAG 1 cut(s) 149
BpuMI CCSGG 3 cut(s) 40, 243, 351
BsaAI YACGTR 3 cut(s) 836, 887, 1409
BsaHI GRCGYC 1 cut(s) 238
BsaJI CCNNGG 4 cut(s) 241, 350, 979, 1042
BsaWI WCCGGW 3 cut(s) 48, 221, 585
Bsc4I CCNNNNNNNGG 2 cut(s) 459, 1179
Bse118I RCCGGY 1 cut(s) 176
Bse21I CCTNAGG 1 cut(s) 522
Bse3DI GCAATG 1 cut(s) 1573
BseAI TCCGGA 2 cut(s) 48, 221
BseBI CCWGG 1 cut(s) 167
BseDI CCNNGG 4 cut(s) 241, 350, 979, 1042
BseGI GGATG 3 cut(s) 694, 1351, 1459
BseLI CCNNNNNNNGG 2 cut(s) 459, 1179
BseMI GCAATG 1 cut(s) 1573
BseMII CTCAG 2 cut(s) 392, 1341
BseRI GAGGAG 1 cut(s) 1523
BseXI GCAGC 4 cut(s) 320, 377, 448, 1306
BshFI GGCC 2 cut(s) 180, 230
BshNI GGYRCC 1 cut(s) 237
BsiHKAI GWGCWC 5 cut(s) 117, 165, 772, 898, 1150
BsiSI CCGG 7 cut(s) 39, 49, 177, 222, 243, 350, 586
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 2 cut(s) 459, 1179
BsmAI GTCTC 1 cut(s) 1154
BsmFI GGGAC 1 cut(s) 170
BsmI GAATGC 6 cut(s) 673, 862, 925, 988, 1051, 1114
BsnI GGCC 2 cut(s) 180, 230
Bsp1286I GDGCHC 6 cut(s) 117, 165, 358, 772, 898, 1150
Bsp13I TCCGGA 2 cut(s) 48, 221
Bsp143I GATC 6 cut(s) 126, 146, 415, 462, 1165, 1430
BspANI GGCC 2 cut(s) 180, 230
BspCNI CTCAG 2 cut(s) 391, 1342
BspEI TCCGGA 2 cut(s) 48, 221
BspLI GGNNCC 3 cut(s) 44, 239, 417
BspMI ACCTGC 1 cut(s) 1536
BspPI GGATC 4 cut(s) 141, 410, 423, 470
BspT107I GGYRCC 1 cut(s) 237
BsrDI GCAATG 1 cut(s) 1573
BsrFI RCCGGY 1 cut(s) 176
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 4 cut(s) 241, 350, 979, 1042
BssMI GATC 6 cut(s) 126, 146, 415, 462, 1165, 1430
BssNI GRCGYC 1 cut(s) 238
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 7 cut(s) 291, 566, 917, 980, 1043, 1196, 1581
BstACI GRCGYC 1 cut(s) 238
BstBAI YACGTR 3 cut(s) 836, 887, 1409
BstC8I GCNNGC 5 cut(s) 87, 174, 178, 772, 986
BstDEI CTNAG 4 cut(s) 378, 522, 795, 1350
BstDSI CCRYGG 2 cut(s) 979, 1042
BstF5I GGATG 3 cut(s) 694, 1351, 1459
BstH2I RGCGCY 1 cut(s) 241
BstHHI GCGC 2 cut(s) 240, 349
BstKTI GATC 6 cut(s) 129, 149, 418, 465, 1168, 1433
BstMAI GTCTC 1 cut(s) 1154
BstMBI GATC 6 cut(s) 126, 146, 415, 462, 1165, 1430
BstNI CCWGG 1 cut(s) 167
BstNSI RCATGY 1 cut(s) 1109
BstPAI GACNNNNGTC 1 cut(s) 1194
BstSCI CCNGG 4 cut(s) 38, 165, 241, 349
BstV1I GCAGC 4 cut(s) 320, 377, 448, 1306
BstV2I GAAGAC 3 cut(s) 285, 1134, 1222
BstX2I RGATCY 2 cut(s) 415, 1430
BstYI RGATCY 2 cut(s) 415, 1430
Bsu36I CCTNAGG 1 cut(s) 522
BsuI GTATCC 1 cut(s) 871
BsuRI GGCC 2 cut(s) 180, 230
BtgI CCRYGG 2 cut(s) 979, 1042
BtrI CACGTC 2 cut(s) 899, 1151
BtsCI GGATG 3 cut(s) 694, 1351, 1459
BtsI GCAGTG 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 321
BveI ACCTGC 1 cut(s) 1536
Cac8I GCNNGC 5 cut(s) 87, 174, 178, 772, 986
CaiI CAGNNNCTG 1 cut(s) 809
CfoI GCGC 2 cut(s) 240, 349
Cfr10I RCCGGY 1 cut(s) 176
CseI GACGC 1 cut(s) 1268
CviAII CATG 9 cut(s) 396, 728, 791, 854, 1106, 1169, 1220, 1249, 1358
DdeI CTNAG 4 cut(s) 378, 522, 795, 1350
DinI GGCGCC 1 cut(s) 239
DpnI GATC 6 cut(s) 128, 148, 417, 464, 1167, 1432
DpnII GATC 6 cut(s) 126, 146, 415, 462, 1165, 1430
EaeI YGGCCR 1 cut(s) 228
EciI GGCGGA 2 cut(s) 89, 289
Ecl136II GAGCTC 2 cut(s) 115, 163
Eco24I GRGCYC 3 cut(s) 117, 165, 358
Eco53kI GAGCTC 2 cut(s) 115, 163
Eco57I CTGAAG 2 cut(s) 831, 1572
Eco72I CACGTG 1 cut(s) 1409
Eco81I CCTNAGG 1 cut(s) 522
EcoICRI GAGCTC 2 cut(s) 115, 163
EcoRI GAATTC 1 cut(s) 818
EcoRII CCWGG 1 cut(s) 165
EcoT22I ATGCAT 2 cut(s) 397, 1573
EcoT38I GRGCYC 3 cut(s) 117, 165, 358
EgeI GGCGCC 1 cut(s) 239
EheI GGCGCC 1 cut(s) 239
FaeI CATG 9 cut(s) 399, 731, 794, 857, 1109, 1172, 1223, 1252, 1361
FalI AAGNNNNNCTT 4 cut(s) 254, 286, 1433, 1465
FaqI GGGAC 1 cut(s) 170
FatI CATG 9 cut(s) 395, 727, 790, 853, 1105, 1168, 1219, 1248, 1357
FokI GGATG 3 cut(s) 701, 1358, 1466
FriOI GRGCYC 3 cut(s) 117, 165, 358
FspBI CTAG 2 cut(s) 1323, 1467
GlaI GCGC 2 cut(s) 239, 348
GsuI CTGGAG 1 cut(s) 149
HaeII RGCGCY 1 cut(s) 241
HaeIII GGCC 2 cut(s) 180, 230
HapII CCGG 7 cut(s) 39, 49, 177, 222, 243, 350, 586
HgaI GACGC 1 cut(s) 1268
HhaI GCGC 2 cut(s) 240, 349
Hin1I GRCGYC 1 cut(s) 238
Hin1II CATG 9 cut(s) 399, 731, 794, 857, 1109, 1172, 1223, 1252, 1361
Hin6I GCGC 2 cut(s) 238, 347
HinP1I GCGC 2 cut(s) 238, 347
HindIII AAGCTT 1 cut(s) 404
HpaII CCGG 7 cut(s) 39, 49, 177, 222, 243, 350, 586
Hpy188III TCNNGA 4 cut(s) 49, 222, 466, 481
Hpy99I CGWCG 8 cut(s) 113, 134, 903, 1155, 1196, 1284, 1524, 1581
HpyAV CCTTC 6 cut(s) 19, 64, 322, 538, 1381, 1480
HpyCH4III ACNGT 7 cut(s) 291, 566, 917, 980, 1043, 1196, 1581
HpyCH4IV ACGT 9 cut(s) 63, 596, 760, 835, 886, 898, 1150, 1378, 1408
HpyCH4V TGCA 6 cut(s) 395, 1339, 1357, 1406, 1540, 1571
HpyF3I CTNAG 4 cut(s) 378, 522, 795, 1350
HpySE526I ACGT 9 cut(s) 63, 596, 760, 835, 886, 898, 1150, 1378, 1408
Hsp92I GRCGYC 1 cut(s) 238
Hsp92II CATG 9 cut(s) 399, 731, 794, 857, 1109, 1172, 1223, 1252, 1361
HspAI GCGC 2 cut(s) 238, 347
KasI GGCGCC 1 cut(s) 237
Kpn2I TCCGGA 2 cut(s) 48, 221
KroI GCCGGC 1 cut(s) 176
KroNI GCCGGC 1 cut(s) 178
Kzo9I GATC 6 cut(s) 126, 146, 415, 462, 1165, 1430
LmnI GCTCC 5 cut(s) 42, 76, 120, 168, 169
Lsp1109I GCAGC 4 cut(s) 320, 377, 448, 1306
LweI GCATC 7 cut(s) 344, 382, 665, 1326, 1336, 1393, 1444
MaeI CTAG 2 cut(s) 1323, 1467
MaeII ACGT 9 cut(s) 63, 596, 760, 835, 886, 898, 1150, 1378, 1408
MaeIII GTNAC 2 cut(s) 536, 887
MalI GATC 6 cut(s) 128, 148, 417, 464, 1167, 1432
MboI GATC 6 cut(s) 126, 146, 415, 462, 1165, 1430
MflI RGATCY 2 cut(s) 415, 1430
MhlI GDGCHC 6 cut(s) 117, 165, 358, 772, 898, 1150
MluCI AATT 4 cut(s) 256, 818, 1225, 1444
Mly113I GGCGCC 1 cut(s) 238
Mph1103I ATGCAT 2 cut(s) 397, 1573
MroI TCCGGA 2 cut(s) 48, 221
MroNI GCCGGC 1 cut(s) 176
MseI TTAA 6 cut(s) 432, 669, 732, 921, 1328, 1461
MslI CAYNNNNRTG 1 cut(s) 714
MspA1I CMGCKG 1 cut(s) 620
MspI CCGG 7 cut(s) 39, 49, 177, 222, 243, 350, 586
MspR9I CCNGG 4 cut(s) 40, 167, 243, 351
Mva1269I GAATGC 6 cut(s) 673, 862, 925, 988, 1051, 1114
MvaI CCWGG 1 cut(s) 167
NaeI GCCGGC 1 cut(s) 178
NarI GGCGCC 1 cut(s) 238
NciI CCSGG 3 cut(s) 40, 243, 351
NdeII GATC 6 cut(s) 126, 146, 415, 462, 1165, 1430
NgoMIV GCCGGC 1 cut(s) 176
NlaIII CATG 9 cut(s) 399, 731, 794, 857, 1109, 1172, 1223, 1252, 1361
NlaIV GGNNCC 3 cut(s) 44, 239, 417
NmuCI GTSAC 1 cut(s) 536
NsiI ATGCAT 2 cut(s) 397, 1573
NspI RCATGY 1 cut(s) 1109
PctI GAATGC 6 cut(s) 673, 862, 925, 988, 1051, 1114
PdiI GCCGGC 1 cut(s) 178
PfoI TCCNGGA 1 cut(s) 165
PluTI GGCGCC 1 cut(s) 241
PmaCI CACGTG 1 cut(s) 1409
PmlI CACGTG 1 cut(s) 1409
Ppu21I YACGTR 3 cut(s) 836, 887, 1409
PshAI GACNNNNGTC 1 cut(s) 1194
Psp124BI GAGCTC 2 cut(s) 117, 165
Psp1406I AACGTT 1 cut(s) 1378
Psp6I CCWGG 1 cut(s) 165
PspCI CACGTG 1 cut(s) 1409
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 3 cut(s) 44, 239, 417
PstNI CAGNNNCTG 1 cut(s) 809
PsuI RGATCY 2 cut(s) 415, 1430
PvuII CAGCTG 1 cut(s) 620
RseI CAYNNNNRTG 1 cut(s) 714
SacI GAGCTC 2 cut(s) 117, 165
SaqAI TTAA 6 cut(s) 432, 669, 732, 921, 1328, 1461
Sau3AI GATC 6 cut(s) 126, 146, 415, 462, 1165, 1430
ScrFI CCNGG 4 cut(s) 40, 167, 243, 351
SduI GDGCHC 6 cut(s) 117, 165, 358, 772, 898, 1150
SfaNI GCATC 7 cut(s) 344, 382, 665, 1326, 1336, 1393, 1444
SfoI GGCGCC 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 714
SpeI ACTAGT 1 cut(s) 1466
Sse9I AATT 4 cut(s) 256, 818, 1225, 1444
SspDI GGCGCC 1 cut(s) 237
SspMI CTAG 2 cut(s) 1323, 1467
SstI GAGCTC 2 cut(s) 117, 165
StyD4I CCNGG 4 cut(s) 38, 165, 241, 349
TaaI ACNGT 7 cut(s) 291, 566, 917, 980, 1043, 1196, 1581
TaiI ACGT 9 cut(s) 66, 599, 763, 838, 889, 901, 1153, 1381, 1411
TasI AATT 4 cut(s) 256, 818, 1225, 1444
TauI GCSGC 7 cut(s) 92, 249, 305, 308, 314, 317, 320
Tru1I TTAA 6 cut(s) 432, 669, 732, 921, 1328, 1461
Tru9I TTAA 6 cut(s) 432, 669, 732, 921, 1328, 1461
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 1 cut(s) 536
TseI GCWGC 4 cut(s) 308, 365, 436, 1319
Tsp45I GTSAC 1 cut(s) 536
TspDTI ATGAA 7 cut(s) 705, 768, 831, 1083, 1236, 1278, 1374
TspGWI ACGGA 3 cut(s) 146, 812, 1508
TspRI CASTG 1 cut(s) 328
XapI RAATTY 3 cut(s) 818, 1225, 1444
XceI RCATGY 1 cut(s) 1109
XspI CTAG 2 cut(s) 1323, 1467
Zsp2I ATGCAT 2 cut(s) 397, 1573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.