Pre-mRNA-splicing factor cwc25
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G44195 AT2G44200 |
| fragaria_vesca | FvH4_4g13451 |
| malus_domestica | MD04G1014200.v1.1 |
| prunus_persica | Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161500_v2.0.a1 Prupe.1G161500_v2.0.a1 Prupe.1G161500_v2.0.a1 Prupe.1G162300_v2.0.a1 |
| pyrus_communis | pycom04g01100 |
| rosa_chinensis | RchiOBHm_Chr4g0414011 |
| rosa_laevigata | RLG00000008185 |
| rosa_multiflora | Rmu_sc0003264.1_g000022 Rmu_sc0006428.1_g000008 |
| rosa_roxburghii | Rroxscaffold_5G00357930 |
| rosa_rugosa | Rorug04G0125000 |
| rosa_samantha | Rh4AG183500 Rh4BG183000 Rh4CG195500 Rh4DG178800 |
| rosa_wichuraiana | Rw4G015600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1536 |
| AccB1I | GGYRCC | 1 cut(s) | 237 |
| AccIII | TCCGGA | 2 cut(s) | 48, 221 |
| AclI | AACGTT | 1 cut(s) | 1378 |
| AclWI | GGATC | 4 cut(s) | 141, 410, 423, 470 |
| AcoI | YGGCCR | 1 cut(s) | 228 |
| AcsI | RAATTY | 3 cut(s) | 818, 1225, 1444 |
| AcuI | CTGAAG | 2 cut(s) | 831, 1572 |
| AcvI | CACGTG | 1 cut(s) | 1409 |
| AcyI | GRCGYC | 1 cut(s) | 238 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 459, 1179 |
| AflIII | ACRYGT | 1 cut(s) | 63 |
| AgsI | TTSAA | 6 cut(s) | 10, 262, 509, 579, 749, 1384 |
| AhlI | ACTAGT | 1 cut(s) | 1466 |
| AjiI | CACGTC | 2 cut(s) | 899, 1151 |
| AjnI | CCWGG | 1 cut(s) | 165 |
| Alw21I | GWGCWC | 5 cut(s) | 117, 165, 772, 898, 1150 |
| Alw26I | GTCTC | 1 cut(s) | 1154 |
| AlwI | GGATC | 4 cut(s) | 141, 410, 423, 470 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 809 |
| Aor13HI | TCCGGA | 2 cut(s) | 48, 221 |
| AoxI | GGCC | 2 cut(s) | 178, 228 |
| ApeKI | GCWGC | 4 cut(s) | 308, 365, 436, 1319 |
| ApoI | RAATTY | 3 cut(s) | 818, 1225, 1444 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 114, 146 |
| AspLEI | GCGC | 2 cut(s) | 240, 349 |
| AsuC2I | CCSGG | 3 cut(s) | 40, 243, 351 |
| AxyI | CCTNAGG | 1 cut(s) | 522 |
| BamHI | GGATCC | 1 cut(s) | 415 |
| BanI | GGYRCC | 1 cut(s) | 237 |
| BanII | GRGCYC | 3 cut(s) | 117, 165, 358 |
| BbrPI | CACGTG | 1 cut(s) | 1409 |
| BbsI | GAAGAC | 3 cut(s) | 285, 1134, 1222 |
| Bbv12I | GWGCWC | 5 cut(s) | 117, 165, 772, 898, 1150 |
| BbvI | GCAGC | 4 cut(s) | 320, 377, 448, 1306 |
| BccI | CCATC | 3 cut(s) | 478, 1336, 1365 |
| BceAI | ACGGC | 1 cut(s) | 215 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 109, 143, 1385, 1419 |
| BciT130I | CCWGG | 1 cut(s) | 167 |
| BciVI | GTATCC | 1 cut(s) | 871 |
| BcnI | CCSGG | 3 cut(s) | 40, 243, 351 |
| BcoDI | GTCTC | 1 cut(s) | 1154 |
| BcuI | ACTAGT | 1 cut(s) | 1466 |
| BfaI | CTAG | 2 cut(s) | 1323, 1467 |
| BfoI | RGCGCY | 1 cut(s) | 241 |
| BfuAI | ACCTGC | 1 cut(s) | 1536 |
| BfuI | GTATCC | 1 cut(s) | 871 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 246 |
| BglII | AGATCT | 1 cut(s) | 1430 |
| Bme1390I | CCNGG | 4 cut(s) | 40, 167, 243, 351 |
| BmgBI | CACGTC | 2 cut(s) | 899, 1151 |
| BmiI | GGNNCC | 3 cut(s) | 44, 239, 417 |
| BmrFI | CCNGG | 4 cut(s) | 40, 167, 243, 351 |
| BmsI | GCATC | 7 cut(s) | 344, 382, 665, 1326, 1336, 1393, 1444 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1194 |
| BpiI | GAAGAC | 3 cut(s) | 285, 1134, 1222 |
| BpmI | CTGGAG | 1 cut(s) | 149 |
| BpuMI | CCSGG | 3 cut(s) | 40, 243, 351 |
| BsaAI | YACGTR | 3 cut(s) | 836, 887, 1409 |
| BsaHI | GRCGYC | 1 cut(s) | 238 |
| BsaJI | CCNNGG | 4 cut(s) | 241, 350, 979, 1042 |
| BsaWI | WCCGGW | 3 cut(s) | 48, 221, 585 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 459, 1179 |
| Bse118I | RCCGGY | 1 cut(s) | 176 |
| Bse21I | CCTNAGG | 1 cut(s) | 522 |
| Bse3DI | GCAATG | 1 cut(s) | 1573 |
| BseAI | TCCGGA | 2 cut(s) | 48, 221 |
| BseBI | CCWGG | 1 cut(s) | 167 |
| BseDI | CCNNGG | 4 cut(s) | 241, 350, 979, 1042 |
| BseGI | GGATG | 3 cut(s) | 694, 1351, 1459 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 459, 1179 |
| BseMI | GCAATG | 1 cut(s) | 1573 |
| BseMII | CTCAG | 2 cut(s) | 392, 1341 |
| BseRI | GAGGAG | 1 cut(s) | 1523 |
| BseXI | GCAGC | 4 cut(s) | 320, 377, 448, 1306 |
| BshFI | GGCC | 2 cut(s) | 180, 230 |
| BshNI | GGYRCC | 1 cut(s) | 237 |
| BsiHKAI | GWGCWC | 5 cut(s) | 117, 165, 772, 898, 1150 |
| BsiSI | CCGG | 7 cut(s) | 39, 49, 177, 222, 243, 350, 586 |
| BslFI | GGGAC | 1 cut(s) | 170 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 459, 1179 |
| BsmAI | GTCTC | 1 cut(s) | 1154 |
| BsmFI | GGGAC | 1 cut(s) | 170 |
| BsmI | GAATGC | 6 cut(s) | 673, 862, 925, 988, 1051, 1114 |
| BsnI | GGCC | 2 cut(s) | 180, 230 |
| Bsp1286I | GDGCHC | 6 cut(s) | 117, 165, 358, 772, 898, 1150 |
| Bsp13I | TCCGGA | 2 cut(s) | 48, 221 |
| Bsp143I | GATC | 6 cut(s) | 126, 146, 415, 462, 1165, 1430 |
| BspANI | GGCC | 2 cut(s) | 180, 230 |
| BspCNI | CTCAG | 2 cut(s) | 391, 1342 |
| BspEI | TCCGGA | 2 cut(s) | 48, 221 |
| BspLI | GGNNCC | 3 cut(s) | 44, 239, 417 |
| BspMI | ACCTGC | 1 cut(s) | 1536 |
| BspPI | GGATC | 4 cut(s) | 141, 410, 423, 470 |
| BspT107I | GGYRCC | 1 cut(s) | 237 |
| BsrDI | GCAATG | 1 cut(s) | 1573 |
| BsrFI | RCCGGY | 1 cut(s) | 176 |
| BssAI | RCCGGY | 1 cut(s) | 176 |
| BssECI | CCNNGG | 4 cut(s) | 241, 350, 979, 1042 |
| BssMI | GATC | 6 cut(s) | 126, 146, 415, 462, 1165, 1430 |
| BssNI | GRCGYC | 1 cut(s) | 238 |
| Bst2UI | CCWGG | 1 cut(s) | 167 |
| Bst4CI | ACNGT | 7 cut(s) | 291, 566, 917, 980, 1043, 1196, 1581 |
| BstACI | GRCGYC | 1 cut(s) | 238 |
| BstBAI | YACGTR | 3 cut(s) | 836, 887, 1409 |
| BstC8I | GCNNGC | 5 cut(s) | 87, 174, 178, 772, 986 |
| BstDEI | CTNAG | 4 cut(s) | 378, 522, 795, 1350 |
| BstDSI | CCRYGG | 2 cut(s) | 979, 1042 |
| BstF5I | GGATG | 3 cut(s) | 694, 1351, 1459 |
| BstH2I | RGCGCY | 1 cut(s) | 241 |
| BstHHI | GCGC | 2 cut(s) | 240, 349 |
| BstKTI | GATC | 6 cut(s) | 129, 149, 418, 465, 1168, 1433 |
| BstMAI | GTCTC | 1 cut(s) | 1154 |
| BstMBI | GATC | 6 cut(s) | 126, 146, 415, 462, 1165, 1430 |
| BstNI | CCWGG | 1 cut(s) | 167 |
| BstNSI | RCATGY | 1 cut(s) | 1109 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1194 |
| BstSCI | CCNGG | 4 cut(s) | 38, 165, 241, 349 |
| BstV1I | GCAGC | 4 cut(s) | 320, 377, 448, 1306 |
| BstV2I | GAAGAC | 3 cut(s) | 285, 1134, 1222 |
| BstX2I | RGATCY | 2 cut(s) | 415, 1430 |
| BstYI | RGATCY | 2 cut(s) | 415, 1430 |
| Bsu36I | CCTNAGG | 1 cut(s) | 522 |
| BsuI | GTATCC | 1 cut(s) | 871 |
| BsuRI | GGCC | 2 cut(s) | 180, 230 |
| BtgI | CCRYGG | 2 cut(s) | 979, 1042 |
| BtrI | CACGTC | 2 cut(s) | 899, 1151 |
| BtsCI | GGATG | 3 cut(s) | 694, 1351, 1459 |
| BtsI | GCAGTG | 1 cut(s) | 321 |
| BtsIMutI | CAGTG | 1 cut(s) | 321 |
| BveI | ACCTGC | 1 cut(s) | 1536 |
| Cac8I | GCNNGC | 5 cut(s) | 87, 174, 178, 772, 986 |
| CaiI | CAGNNNCTG | 1 cut(s) | 809 |
| CfoI | GCGC | 2 cut(s) | 240, 349 |
| Cfr10I | RCCGGY | 1 cut(s) | 176 |
| CseI | GACGC | 1 cut(s) | 1268 |
| CviAII | CATG | 9 cut(s) | 396, 728, 791, 854, 1106, 1169, 1220, 1249, 1358 |
| DdeI | CTNAG | 4 cut(s) | 378, 522, 795, 1350 |
| DinI | GGCGCC | 1 cut(s) | 239 |
| DpnI | GATC | 6 cut(s) | 128, 148, 417, 464, 1167, 1432 |
| DpnII | GATC | 6 cut(s) | 126, 146, 415, 462, 1165, 1430 |
| EaeI | YGGCCR | 1 cut(s) | 228 |
| EciI | GGCGGA | 2 cut(s) | 89, 289 |
| Ecl136II | GAGCTC | 2 cut(s) | 115, 163 |
| Eco24I | GRGCYC | 3 cut(s) | 117, 165, 358 |
| Eco53kI | GAGCTC | 2 cut(s) | 115, 163 |
| Eco57I | CTGAAG | 2 cut(s) | 831, 1572 |
| Eco72I | CACGTG | 1 cut(s) | 1409 |
| Eco81I | CCTNAGG | 1 cut(s) | 522 |
| EcoICRI | GAGCTC | 2 cut(s) | 115, 163 |
| EcoRI | GAATTC | 1 cut(s) | 818 |
| EcoRII | CCWGG | 1 cut(s) | 165 |
| EcoT22I | ATGCAT | 2 cut(s) | 397, 1573 |
| EcoT38I | GRGCYC | 3 cut(s) | 117, 165, 358 |
| EgeI | GGCGCC | 1 cut(s) | 239 |
| EheI | GGCGCC | 1 cut(s) | 239 |
| FaeI | CATG | 9 cut(s) | 399, 731, 794, 857, 1109, 1172, 1223, 1252, 1361 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 254, 286, 1433, 1465 |
| FaqI | GGGAC | 1 cut(s) | 170 |
| FatI | CATG | 9 cut(s) | 395, 727, 790, 853, 1105, 1168, 1219, 1248, 1357 |
| FokI | GGATG | 3 cut(s) | 701, 1358, 1466 |
| FriOI | GRGCYC | 3 cut(s) | 117, 165, 358 |
| FspBI | CTAG | 2 cut(s) | 1323, 1467 |
| GlaI | GCGC | 2 cut(s) | 239, 348 |
| GsuI | CTGGAG | 1 cut(s) | 149 |
| HaeII | RGCGCY | 1 cut(s) | 241 |
| HaeIII | GGCC | 2 cut(s) | 180, 230 |
| HapII | CCGG | 7 cut(s) | 39, 49, 177, 222, 243, 350, 586 |
| HgaI | GACGC | 1 cut(s) | 1268 |
| HhaI | GCGC | 2 cut(s) | 240, 349 |
| Hin1I | GRCGYC | 1 cut(s) | 238 |
| Hin1II | CATG | 9 cut(s) | 399, 731, 794, 857, 1109, 1172, 1223, 1252, 1361 |
| Hin6I | GCGC | 2 cut(s) | 238, 347 |
| HinP1I | GCGC | 2 cut(s) | 238, 347 |
| HindIII | AAGCTT | 1 cut(s) | 404 |
| HpaII | CCGG | 7 cut(s) | 39, 49, 177, 222, 243, 350, 586 |
| Hpy188III | TCNNGA | 4 cut(s) | 49, 222, 466, 481 |
| Hpy99I | CGWCG | 8 cut(s) | 113, 134, 903, 1155, 1196, 1284, 1524, 1581 |
| HpyAV | CCTTC | 6 cut(s) | 19, 64, 322, 538, 1381, 1480 |
| HpyCH4III | ACNGT | 7 cut(s) | 291, 566, 917, 980, 1043, 1196, 1581 |
| HpyCH4IV | ACGT | 9 cut(s) | 63, 596, 760, 835, 886, 898, 1150, 1378, 1408 |
| HpyCH4V | TGCA | 6 cut(s) | 395, 1339, 1357, 1406, 1540, 1571 |
| HpyF3I | CTNAG | 4 cut(s) | 378, 522, 795, 1350 |
| HpySE526I | ACGT | 9 cut(s) | 63, 596, 760, 835, 886, 898, 1150, 1378, 1408 |
| Hsp92I | GRCGYC | 1 cut(s) | 238 |
| Hsp92II | CATG | 9 cut(s) | 399, 731, 794, 857, 1109, 1172, 1223, 1252, 1361 |
| HspAI | GCGC | 2 cut(s) | 238, 347 |
| KasI | GGCGCC | 1 cut(s) | 237 |
| Kpn2I | TCCGGA | 2 cut(s) | 48, 221 |
| KroI | GCCGGC | 1 cut(s) | 176 |
| KroNI | GCCGGC | 1 cut(s) | 178 |
| Kzo9I | GATC | 6 cut(s) | 126, 146, 415, 462, 1165, 1430 |
| LmnI | GCTCC | 5 cut(s) | 42, 76, 120, 168, 169 |
| Lsp1109I | GCAGC | 4 cut(s) | 320, 377, 448, 1306 |
| LweI | GCATC | 7 cut(s) | 344, 382, 665, 1326, 1336, 1393, 1444 |
| MaeI | CTAG | 2 cut(s) | 1323, 1467 |
| MaeII | ACGT | 9 cut(s) | 63, 596, 760, 835, 886, 898, 1150, 1378, 1408 |
| MaeIII | GTNAC | 2 cut(s) | 536, 887 |
| MalI | GATC | 6 cut(s) | 128, 148, 417, 464, 1167, 1432 |
| MboI | GATC | 6 cut(s) | 126, 146, 415, 462, 1165, 1430 |
| MflI | RGATCY | 2 cut(s) | 415, 1430 |
| MhlI | GDGCHC | 6 cut(s) | 117, 165, 358, 772, 898, 1150 |
| MluCI | AATT | 4 cut(s) | 256, 818, 1225, 1444 |
| Mly113I | GGCGCC | 1 cut(s) | 238 |
| Mph1103I | ATGCAT | 2 cut(s) | 397, 1573 |
| MroI | TCCGGA | 2 cut(s) | 48, 221 |
| MroNI | GCCGGC | 1 cut(s) | 176 |
| MseI | TTAA | 6 cut(s) | 432, 669, 732, 921, 1328, 1461 |
| MslI | CAYNNNNRTG | 1 cut(s) | 714 |
| MspA1I | CMGCKG | 1 cut(s) | 620 |
| MspI | CCGG | 7 cut(s) | 39, 49, 177, 222, 243, 350, 586 |
| MspR9I | CCNGG | 4 cut(s) | 40, 167, 243, 351 |
| Mva1269I | GAATGC | 6 cut(s) | 673, 862, 925, 988, 1051, 1114 |
| MvaI | CCWGG | 1 cut(s) | 167 |
| NaeI | GCCGGC | 1 cut(s) | 178 |
| NarI | GGCGCC | 1 cut(s) | 238 |
| NciI | CCSGG | 3 cut(s) | 40, 243, 351 |
| NdeII | GATC | 6 cut(s) | 126, 146, 415, 462, 1165, 1430 |
| NgoMIV | GCCGGC | 1 cut(s) | 176 |
| NlaIII | CATG | 9 cut(s) | 399, 731, 794, 857, 1109, 1172, 1223, 1252, 1361 |
| NlaIV | GGNNCC | 3 cut(s) | 44, 239, 417 |
| NmuCI | GTSAC | 1 cut(s) | 536 |
| NsiI | ATGCAT | 2 cut(s) | 397, 1573 |
| NspI | RCATGY | 1 cut(s) | 1109 |
| PctI | GAATGC | 6 cut(s) | 673, 862, 925, 988, 1051, 1114 |
| PdiI | GCCGGC | 1 cut(s) | 178 |
| PfoI | TCCNGGA | 1 cut(s) | 165 |
| PluTI | GGCGCC | 1 cut(s) | 241 |
| PmaCI | CACGTG | 1 cut(s) | 1409 |
| PmlI | CACGTG | 1 cut(s) | 1409 |
| Ppu21I | YACGTR | 3 cut(s) | 836, 887, 1409 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1194 |
| Psp124BI | GAGCTC | 2 cut(s) | 117, 165 |
| Psp1406I | AACGTT | 1 cut(s) | 1378 |
| Psp6I | CCWGG | 1 cut(s) | 165 |
| PspCI | CACGTG | 1 cut(s) | 1409 |
| PspGI | CCWGG | 1 cut(s) | 165 |
| PspN4I | GGNNCC | 3 cut(s) | 44, 239, 417 |
| PstNI | CAGNNNCTG | 1 cut(s) | 809 |
| PsuI | RGATCY | 2 cut(s) | 415, 1430 |
| PvuII | CAGCTG | 1 cut(s) | 620 |
| RseI | CAYNNNNRTG | 1 cut(s) | 714 |
| SacI | GAGCTC | 2 cut(s) | 117, 165 |
| SaqAI | TTAA | 6 cut(s) | 432, 669, 732, 921, 1328, 1461 |
| Sau3AI | GATC | 6 cut(s) | 126, 146, 415, 462, 1165, 1430 |
| ScrFI | CCNGG | 4 cut(s) | 40, 167, 243, 351 |
| SduI | GDGCHC | 6 cut(s) | 117, 165, 358, 772, 898, 1150 |
| SfaNI | GCATC | 7 cut(s) | 344, 382, 665, 1326, 1336, 1393, 1444 |
| SfoI | GGCGCC | 1 cut(s) | 239 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 714 |
| SpeI | ACTAGT | 1 cut(s) | 1466 |
| Sse9I | AATT | 4 cut(s) | 256, 818, 1225, 1444 |
| SspDI | GGCGCC | 1 cut(s) | 237 |
| SspMI | CTAG | 2 cut(s) | 1323, 1467 |
| SstI | GAGCTC | 2 cut(s) | 117, 165 |
| StyD4I | CCNGG | 4 cut(s) | 38, 165, 241, 349 |
| TaaI | ACNGT | 7 cut(s) | 291, 566, 917, 980, 1043, 1196, 1581 |
| TaiI | ACGT | 9 cut(s) | 66, 599, 763, 838, 889, 901, 1153, 1381, 1411 |
| TasI | AATT | 4 cut(s) | 256, 818, 1225, 1444 |
| TauI | GCSGC | 7 cut(s) | 92, 249, 305, 308, 314, 317, 320 |
| Tru1I | TTAA | 6 cut(s) | 432, 669, 732, 921, 1328, 1461 |
| Tru9I | TTAA | 6 cut(s) | 432, 669, 732, 921, 1328, 1461 |
| TscAI | CASTG | 1 cut(s) | 328 |
| TseFI | GTSAC | 1 cut(s) | 536 |
| TseI | GCWGC | 4 cut(s) | 308, 365, 436, 1319 |
| Tsp45I | GTSAC | 1 cut(s) | 536 |
| TspDTI | ATGAA | 7 cut(s) | 705, 768, 831, 1083, 1236, 1278, 1374 |
| TspGWI | ACGGA | 3 cut(s) | 146, 812, 1508 |
| TspRI | CASTG | 1 cut(s) | 328 |
| XapI | RAATTY | 3 cut(s) | 818, 1225, 1444 |
| XceI | RCATGY | 1 cut(s) | 1109 |
| XspI | CTAG | 2 cut(s) | 1323, 1467 |
| Zsp2I | ATGCAT | 2 cut(s) | 397, 1573 |