Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006065

Physical Location & Seq

Genomic Coordinates Reverse (-)

13014223 .. 13017410

Gene Structure 3188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G162300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCGTTGAAATTTCTGAACAAGAAGGGATGGCACACAGGGGGCCTTCGGAACATAGAGAACGTGTGGATGGCAGAGCAAAAGCACAAGGCCGAGCAGAAGAAGTTGGACGAGCTCCGCAAACAGATCGTTGAAGAGCGCAAGAGTGGATTGGCCATTGGGAGCCCTGTTGGTTCCGATAGTTTCAAAACCCTTGAAGCCTTACCCAAGACCAAAGACGCGCCTTCCTCCTCTGCCGCCTCCAAGCAGCAGGCATCAGCATCTGTGTCGGGAGCTCTGTTCGAAGAAAAGCCTCAATCTGCCAATGATGCTTGGAGGAAGCTCCACTTGGATCCTTTGCTTATGATTCGGCAGCGTGAGCAGGAAGCCCTTTCTCGTATTAAGAACAATCCTGTCCAGATGGCCATGATTCGCAATTCTAGTGGTCATCGTAAGATATCAAAGTATGTTAAGCATTCAGATTCGGAAGATGAATCACGTAAAAGCGCACGTCGACGTGAGAATACTTTCAAGCATTCAGATTCAGAAGATGAATCACGTATCAGAGCACATCGAAGTGGGAAGAACCCTGTTAAGCGTTTAGATTCCGAAGATGAATTCCGTTACAGAACACGGAGAAGTGAGAAGAACCATGTTAAACATTCAGATTCCAAAGATGAATCACGTAAAAGAAGCACGCTGAGGAGAGAAGAATCAGCCCATAAAAATTGGAAGAGATATGGTCAAGTTGATGCCAAGGGAAAACATGACAATTTAGAACTAGAAAAATACCCCATGAAAGGTCGGAATGAATCACAGTACAGGAGAAGAAAGAGCTGCTGGGCTAAAGGAGAAGAAAGAGCTCCTAAACTTTCAGAAGAAGAAACAGCTGCTGGGCTAAGGGAGATAATCCAGTGTTTATGGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CWC25 Cir_N

Protein Analysis

303

Amino Acids

35.03

Weight (kDa)

9.9

Isoelectric Point (pI)

71.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44195 AT2G44200
fragaria_vesca	FvH4_4g13451
malus_domestica	MD04G1014200.v1.1
prunus_persica	Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161500_v2.0.a1 Prupe.1G161500_v2.0.a1 Prupe.1G161500_v2.0.a1 Prupe.1G162300_v2.0.a1
pyrus_communis	pycom04g01100
rosa_chinensis	RchiOBHm_Chr4g0414011
rosa_laevigata	RLG00000008185
rosa_multiflora	Rmu_sc0003264.1_g000022 Rmu_sc0006428.1_g000008
rosa_roxburghii	Rroxscaffold_5G00357930
rosa_rugosa	Rorug04G0125000
rosa_samantha	Rh4AG183500 Rh4BG183000 Rh4CG195500 Rh4DG178800
rosa_wichuraiana	Rw4G015600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	493
AccII	CGCG	1 cut(s)	221
AciI	CCGC	2 cut(s)	118, 237
AclWI	GGATC	2 cut(s)	326, 339
AcoI	YGGCCR	2 cut(s)	153, 402
AcsI	RAATTY	2 cut(s)	11, 596
AfaI	GTAC	1 cut(s)	800
AfiI	CCNNNNNNNGG	1 cut(s)	779
AflIII	ACRYGT	1 cut(s)	63
AgsI	TTSAA	5 cut(s)	10, 134, 187, 197, 511
AjiI	CACGTC	2 cut(s)	491, 497
AjuI	GAANNNNNNNTTGG	2 cut(s)	311, 343
AluBI	AGCT	6 cut(s)	115, 275, 322, 816, 842, 869
AluI	AGCT	6 cut(s)	115, 275, 322, 816, 842, 869
Alw21I	GWGCWC	4 cut(s)	117, 277, 550, 844
AlwI	GGATC	2 cut(s)	326, 339
AlwNI	CAGNNNCTG	2 cut(s)	263, 872
AoxI	GGCC	4 cut(s)	43, 90, 153, 402
ApeKI	GCWGC	4 cut(s)	247, 352, 816, 869
ApoI	RAATTY	2 cut(s)	11, 596
Asp700I	GAANNNNTTC	1 cut(s)	506
AspLEI	GCGC	3 cut(s)	141, 223, 488
AspS9I	GGNCC	1 cut(s)	43
AsuII	TTCGAA	1 cut(s)	282
BalI	TGGCCA	2 cut(s)	155, 404
BamHI	GGATCC	1 cut(s)	331
BanII	GRGCYC	4 cut(s)	117, 167, 277, 844
Bbv12I	GWGCWC	4 cut(s)	117, 277, 550, 844
BbvCI	CCTCAGC	1 cut(s)	680
BbvI	GCAGC	4 cut(s)	259, 364, 803, 856
BccI	CCATC	3 cut(s)	24, 64, 394
BcgI	CGANNNNNNTGC	4 cut(s)	109, 143, 249, 283
BfaI	CTAG	2 cut(s)	420, 761
BisI	GCNGC	5 cut(s)	237, 248, 353, 817, 870
BlsI	GCNGC	5 cut(s)	238, 249, 354, 818, 871
BmgBI	CACGTC	2 cut(s)	491, 497
BmgT120I	GGNCC	1 cut(s)	43
BmiI	GGNNCC	4 cut(s)	44, 164, 175, 333
BmsI	GCATC	4 cut(s)	263, 269, 298, 721
Bpu10I	CCTNAGC	2 cut(s)	680, 878
Bpu14I	TTCGAA	1 cut(s)	282
BsaAI	YACGTR	3 cut(s)	479, 539, 665
BsaJI	CCNNGG	1 cut(s)	735
Bsc4I	CCNNNNNNNGG	1 cut(s)	779
Bse1I	ACTGG	1 cut(s)	892
BseDI	CCNNGG	1 cut(s)	735
BseGI	GGATG	2 cut(s)	35, 75
BseLI	CCNNNNNNNGG	1 cut(s)	779
BseMII	CTCAG	1 cut(s)	671
BseNI	ACTGG	1 cut(s)	892
BseRI	GAGGAG	2 cut(s)	220, 697
BseXI	GCAGC	4 cut(s)	259, 364, 803, 856
BseYI	CCCAGC	2 cut(s)	819, 872
Bsh1236I	CGCG	1 cut(s)	221
BshFI	GGCC	4 cut(s)	45, 92, 155, 404
BsiHKAI	GWGCWC	4 cut(s)	117, 277, 550, 844
BslI	CCNNNNNNNGG	1 cut(s)	779
BsmI	GAATGC	2 cut(s)	454, 514
BsnI	GGCC	4 cut(s)	45, 92, 155, 404
Bsp119I	TTCGAA	1 cut(s)	282
Bsp1286I	GDGCHC	5 cut(s)	117, 167, 277, 550, 844
Bsp143I	GATC	2 cut(s)	126, 331
BspACI	CCGC	2 cut(s)	118, 237
BspANI	GGCC	4 cut(s)	45, 92, 155, 404
BspCNI	CTCAG	1 cut(s)	672
BspFNI	CGCG	1 cut(s)	221
BspLI	GGNNCC	4 cut(s)	44, 164, 175, 333
BspPI	GGATC	2 cut(s)	326, 339
BspQI	GCTCTTC	1 cut(s)	129
BspT104I	TTCGAA	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	892
BssECI	CCNNGG	1 cut(s)	735
BssMI	GATC	2 cut(s)	126, 331
BssT1I	CCWWGG	1 cut(s)	735
Bst4CI	ACNGT	1 cut(s)	798
Bst6I	CTCTTC	2 cut(s)	129, 707
BstBAI	YACGTR	3 cut(s)	479, 539, 665
BstBI	TTCGAA	1 cut(s)	282
BstC8I	GCNNGC	2 cut(s)	252, 677
BstDEI	CTNAG	2 cut(s)	680, 878
BstF5I	GGATG	2 cut(s)	35, 75
BstFNI	CGCG	1 cut(s)	221
BstHHI	GCGC	3 cut(s)	141, 223, 488
BstKTI	GATC	2 cut(s)	129, 334
BstMBI	GATC	2 cut(s)	126, 331
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 358
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	4 cut(s)	259, 364, 803, 856
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	4 cut(s)	45, 92, 155, 404
BtrI	CACGTC	2 cut(s)	491, 497
BtsCI	GGATG	2 cut(s)	35, 75
BtsIMutI	CAGTG	1 cut(s)	899
Cac8I	GCNNGC	2 cut(s)	252, 677
CaiI	CAGNNNCTG	2 cut(s)	263, 872
CfoI	GCGC	3 cut(s)	141, 223, 488
Cfr13I	GGNCC	1 cut(s)	43
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	799
CspCI	CAANNNNNGTGG	2 cut(s)	403, 438
CviAII	CATG	4 cut(s)	406, 632, 746, 775
CviQI	GTAC	1 cut(s)	799
DdeI	CTNAG	2 cut(s)	680, 878
DpnI	GATC	2 cut(s)	128, 333
DpnII	GATC	2 cut(s)	126, 331
EaeI	YGGCCR	2 cut(s)	153, 402
Eam1104I	CTCTTC	2 cut(s)	129, 707
EarI	CTCTTC	2 cut(s)	129, 707
Ecl136II	GAGCTC	3 cut(s)	115, 275, 842
Eco130I	CCWWGG	1 cut(s)	735
Eco24I	GRGCYC	4 cut(s)	117, 167, 277, 844
Eco32I	GATATC	1 cut(s)	438
Eco53kI	GAGCTC	3 cut(s)	115, 275, 842
EcoICRI	GAGCTC	3 cut(s)	115, 275, 842
EcoO109I	RGGNCCY	1 cut(s)	43
EcoRI	GAATTC	1 cut(s)	596
EcoRV	GATATC	1 cut(s)	438
EcoT14I	CCWWGG	1 cut(s)	735
EcoT38I	GRGCYC	4 cut(s)	117, 167, 277, 844
ErhI	CCWWGG	1 cut(s)	735
FaeI	CATG	4 cut(s)	409, 635, 749, 778
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FatI	CATG	4 cut(s)	405, 631, 745, 774
FblI	GTMKAC	1 cut(s)	493
Fnu4HI	GCNGC	5 cut(s)	237, 248, 353, 817, 870
FokI	GGATG	2 cut(s)	42, 82
FriOI	GRGCYC	4 cut(s)	117, 167, 277, 844
Fsp4HI	GCNGC	5 cut(s)	237, 248, 353, 817, 870
FspBI	CTAG	2 cut(s)	420, 761
GlaI	GCGC	3 cut(s)	140, 222, 487
GluI	GCNGC	5 cut(s)	237, 248, 353, 817, 870
GsaI	CCCAGC	2 cut(s)	823, 876
HaeIII	GGCC	4 cut(s)	45, 92, 155, 404
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	3 cut(s)	141, 223, 488
Hin1II	CATG	4 cut(s)	409, 635, 749, 778
Hin6I	GCGC	3 cut(s)	139, 221, 486
HinP1I	GCGC	3 cut(s)	139, 221, 486
HincII	GTYRAC	1 cut(s)	494
HindII	GTYRAC	1 cut(s)	494
Hpy166II	GTNNAC	1 cut(s)	494
Hpy188III	TCNNGA	2 cut(s)	270, 397
Hpy8I	GTNNAC	1 cut(s)	494
Hpy99I	CGWCG	2 cut(s)	495, 498
HpyAV	CCTTC	3 cut(s)	19, 56, 234
HpyCH4III	ACNGT	1 cut(s)	798
HpyCH4IV	ACGT	6 cut(s)	63, 478, 490, 496, 538, 664
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 358
HpyF3I	CTNAG	2 cut(s)	680, 878
HpySE526I	ACGT	6 cut(s)	63, 478, 490, 496, 538, 664
Hsp92II	CATG	4 cut(s)	409, 635, 749, 778
HspAI	GCGC	3 cut(s)	139, 221, 486
Kzo9I	GATC	2 cut(s)	126, 331
LguI	GCTCTTC	1 cut(s)	129
LmnI	GCTCC	5 cut(s)	120, 162, 272, 327, 847
Lsp1109I	GCAGC	4 cut(s)	259, 364, 803, 856
LweI	GCATC	4 cut(s)	263, 269, 298, 721
MaeI	CTAG	2 cut(s)	420, 761
MaeII	ACGT	6 cut(s)	63, 478, 490, 496, 538, 664
MaeIII	GTNAC	1 cut(s)	602
MalI	GATC	2 cut(s)	128, 333
MboI	GATC	2 cut(s)	126, 331
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	5 cut(s)	117, 167, 277, 550, 844
MlsI	TGGCCA	2 cut(s)	155, 404
MluCI	AATT	5 cut(s)	11, 415, 596, 706, 751
MluNI	TGGCCA	2 cut(s)	155, 404
MmeI	TCCRAC	2 cut(s)	87, 764
MnlI	CCTC	6 cut(s)	238, 241, 250, 303, 309, 675
Mox20I	TGGCCA	2 cut(s)	155, 404
MroXI	GAANNNNTTC	1 cut(s)	506
MscI	TGGCCA	2 cut(s)	155, 404
MseI	TTAA	4 cut(s)	381, 450, 573, 636
MslI	CAYNNNNRTG	1 cut(s)	555
Msp20I	TGGCCA	2 cut(s)	155, 404
MspA1I	CMGCKG	1 cut(s)	869
Mva1269I	GAATGC	2 cut(s)	454, 514
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	2 cut(s)	308, 358
NdeII	GATC	2 cut(s)	126, 331
NlaIII	CATG	4 cut(s)	409, 635, 749, 778
NlaIV	GGNNCC	4 cut(s)	44, 164, 175, 333
NmeAIII	GCCGAG	1 cut(s)	118
NspV	TTCGAA	1 cut(s)	282
PciSI	GCTCTTC	1 cut(s)	129
PctI	GAATGC	2 cut(s)	454, 514
PdmI	GAANNNNTTC	1 cut(s)	506
PkrI	GCNGC	5 cut(s)	238, 249, 354, 818, 871
Ppu21I	YACGTR	3 cut(s)	479, 539, 665
Psp124BI	GAGCTC	3 cut(s)	117, 277, 844
PspFI	CCCAGC	2 cut(s)	819, 872
PspN4I	GGNNCC	4 cut(s)	44, 164, 175, 333
PspPI	GGNCC	1 cut(s)	43
PstNI	CAGNNNCTG	2 cut(s)	263, 872
PsuI	RGATCY	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	869
RsaI	GTAC	1 cut(s)	800
RsaNI	GTAC	1 cut(s)	799
RseI	CAYNNNNRTG	1 cut(s)	555
SacI	GAGCTC	3 cut(s)	117, 277, 844
SalI	GTCGAC	1 cut(s)	492
SapI	GCTCTTC	1 cut(s)	129
SaqAI	TTAA	4 cut(s)	381, 450, 573, 636
SatI	GCNGC	5 cut(s)	237, 248, 353, 817, 870
Sau3AI	GATC	2 cut(s)	126, 331
Sau96I	GGNCC	1 cut(s)	43
SduI	GDGCHC	5 cut(s)	117, 167, 277, 550, 844
SfaNI	GCATC	4 cut(s)	263, 269, 298, 721
SfuI	TTCGAA	1 cut(s)	282
SgrDI	CGTCGACG	1 cut(s)	492
SmiMI	CAYNNNNRTG	1 cut(s)	555
Sse9I	AATT	5 cut(s)	11, 415, 596, 706, 751
SsiI	CCGC	2 cut(s)	118, 237
SspMI	CTAG	2 cut(s)	420, 761
SstI	GAGCTC	3 cut(s)	117, 277, 844
StyI	CCWWGG	1 cut(s)	735
TaaI	ACNGT	1 cut(s)	798
TaiI	ACGT	6 cut(s)	66, 481, 493, 499, 541, 667
TaqI	TCGA	3 cut(s)	282, 493, 553
TasI	AATT	5 cut(s)	11, 415, 596, 706, 751
TatI	WGTACW	1 cut(s)	798
TauI	GCSGC	1 cut(s)	239
Tru1I	TTAA	4 cut(s)	381, 450, 573, 636
Tru9I	TTAA	4 cut(s)	381, 450, 573, 636
TscAI	CASTG	1 cut(s)	899
TseI	GCWGC	4 cut(s)	247, 352, 816, 869
TspDTI	ATGAA	6 cut(s)	486, 546, 609, 672, 791, 804
TspGWI	ACGGA	2 cut(s)	590, 628
TspRI	CASTG	1 cut(s)	899
XapI	RAATTY	2 cut(s)	11, 596
XmiI	GTMKAC	1 cut(s)	493
XmnI	GAANNNNTTC	1 cut(s)	506
XspI	CTAG	2 cut(s)	420, 761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.