Pre-mRNA-splicing factor cwc25
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G44195 AT2G44200 |
| fragaria_vesca | FvH4_4g13451 |
| malus_domestica | MD04G1014200.v1.1 |
| prunus_persica | Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161200_v2.0.a1 Prupe.1G161500_v2.0.a1 Prupe.1G161500_v2.0.a1 Prupe.1G161500_v2.0.a1 Prupe.1G162300_v2.0.a1 |
| pyrus_communis | pycom04g01100 |
| rosa_chinensis | RchiOBHm_Chr4g0414011 |
| rosa_laevigata | RLG00000008185 |
| rosa_multiflora | Rmu_sc0003264.1_g000022 Rmu_sc0006428.1_g000008 |
| rosa_roxburghii | Rroxscaffold_5G00357930 |
| rosa_rugosa | Rorug04G0125000 |
| rosa_samantha | Rh4AG183500 Rh4BG183000 Rh4CG195500 Rh4DG178800 |
| rosa_wichuraiana | Rw4G015600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1613 |
| Acc36I | ACCTGC | 2 cut(s) | 1602, 1613 |
| AccB1I | GGYRCC | 1 cut(s) | 237 |
| AccII | CGCG | 3 cut(s) | 308, 329, 368 |
| AccIII | TCCGGA | 2 cut(s) | 48, 221 |
| AclI | AACGTT | 1 cut(s) | 1444 |
| AclWI | GGATC | 3 cut(s) | 413, 426, 473 |
| AcoI | YGGCCR | 2 cut(s) | 228, 312 |
| AcsI | RAATTY | 1 cut(s) | 1510 |
| AcuI | CTGAAG | 2 cut(s) | 834, 1638 |
| AcvI | CACGTG | 1 cut(s) | 746 |
| AcyI | GRCGYC | 1 cut(s) | 238 |
| AflIII | ACRYGT | 2 cut(s) | 63, 745 |
| AgsI | TTSAA | 6 cut(s) | 10, 262, 512, 582, 752, 1450 |
| AhlI | ACTAGT | 1 cut(s) | 1532 |
| AjiI | CACGTC | 2 cut(s) | 902, 1217 |
| AjnI | CCWGG | 2 cut(s) | 165, 1485 |
| Alw21I | GWGCWC | 5 cut(s) | 117, 165, 775, 901, 1216 |
| Alw26I | GTCTC | 1 cut(s) | 1220 |
| AlwI | GGATC | 3 cut(s) | 413, 426, 473 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 812 |
| Aor13HI | TCCGGA | 2 cut(s) | 48, 221 |
| AoxI | GGCC | 3 cut(s) | 178, 228, 312 |
| ApeKI | GCWGC | 4 cut(s) | 320, 439, 1075, 1385 |
| ApoI | RAATTY | 1 cut(s) | 1510 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 114, 146 |
| AspLEI | GCGC | 2 cut(s) | 240, 352 |
| AsuC2I | CCSGG | 3 cut(s) | 40, 243, 354 |
| AsuHPI | GGTGA | 3 cut(s) | 265, 626, 1637 |
| BamHI | GGATCC | 1 cut(s) | 418 |
| BanI | GGYRCC | 1 cut(s) | 237 |
| BanII | GRGCYC | 3 cut(s) | 117, 165, 361 |
| BauI | CACGAG | 1 cut(s) | 1473 |
| BbrPI | CACGTG | 1 cut(s) | 746 |
| BbsI | GAAGAC | 3 cut(s) | 285, 1200, 1288 |
| Bbv12I | GWGCWC | 5 cut(s) | 117, 165, 775, 901, 1216 |
| BbvI | GCAGC | 4 cut(s) | 307, 451, 1062, 1372 |
| BccI | CCATC | 4 cut(s) | 24, 481, 1402, 1431 |
| BceAI | ACGGC | 1 cut(s) | 215 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 109, 143 |
| BciT130I | CCWGG | 2 cut(s) | 167, 1487 |
| BciVI | GTATCC | 1 cut(s) | 874 |
| BcnI | CCSGG | 3 cut(s) | 40, 243, 354 |
| BcoDI | GTCTC | 1 cut(s) | 1220 |
| BcuI | ACTAGT | 1 cut(s) | 1532 |
| BfaI | CTAG | 1 cut(s) | 1533 |
| BfoI | RGCGCY | 1 cut(s) | 241 |
| BfuAI | ACCTGC | 2 cut(s) | 1602, 1613 |
| BfuI | GTATCC | 1 cut(s) | 874 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 246, 308, 311 |
| BglII | AGATCT | 1 cut(s) | 1496 |
| Bme1390I | CCNGG | 5 cut(s) | 40, 167, 243, 354, 1487 |
| BmgBI | CACGTC | 2 cut(s) | 902, 1217 |
| BmiI | GGNNCC | 3 cut(s) | 44, 239, 420 |
| BmrFI | CCNGG | 5 cut(s) | 40, 167, 243, 354, 1487 |
| BmsI | GCATC | 7 cut(s) | 347, 385, 668, 1392, 1402, 1459, 1510 |
| BpiI | GAAGAC | 3 cut(s) | 285, 1200, 1288 |
| BpmI | CTGGAG | 1 cut(s) | 149 |
| BpuMI | CCSGG | 3 cut(s) | 40, 243, 354 |
| BsaAI | YACGTR | 3 cut(s) | 746, 839, 890 |
| BsaHI | GRCGYC | 1 cut(s) | 238 |
| BsaJI | CCNNGG | 6 cut(s) | 241, 306, 353, 1045, 1108, 1485 |
| BsaWI | WCCGGW | 3 cut(s) | 48, 221, 588 |
| Bse118I | RCCGGY | 1 cut(s) | 176 |
| Bse3DI | GCAATG | 1 cut(s) | 1639 |
| BseAI | TCCGGA | 2 cut(s) | 48, 221 |
| BseBI | CCWGG | 2 cut(s) | 167, 1487 |
| BseDI | CCNNGG | 6 cut(s) | 241, 306, 353, 1045, 1108, 1485 |
| BseGI | GGATG | 4 cut(s) | 35, 697, 1417, 1525 |
| BseMI | GCAATG | 1 cut(s) | 1639 |
| BseMII | CTCAG | 2 cut(s) | 395, 1407 |
| BseRI | GAGGAG | 1 cut(s) | 1589 |
| BseX3I | CGGCCG | 1 cut(s) | 312 |
| BseXI | GCAGC | 4 cut(s) | 307, 451, 1062, 1372 |
| Bsh1236I | CGCG | 3 cut(s) | 308, 329, 368 |
| Bsh1285I | CGRYCG | 1 cut(s) | 315 |
| BshFI | GGCC | 3 cut(s) | 180, 230, 314 |
| BshNI | GGYRCC | 1 cut(s) | 237 |
| BsiEI | CGRYCG | 1 cut(s) | 315 |
| BsiHKAI | GWGCWC | 5 cut(s) | 117, 165, 775, 901, 1216 |
| BsiSI | CCGG | 7 cut(s) | 39, 49, 177, 222, 243, 353, 589 |
| BslFI | GGGAC | 1 cut(s) | 170 |
| BsmAI | GTCTC | 1 cut(s) | 1220 |
| BsmFI | GGGAC | 1 cut(s) | 170 |
| BsmI | GAATGC | 5 cut(s) | 676, 865, 1054, 1117, 1180 |
| BsnI | GGCC | 3 cut(s) | 180, 230, 314 |
| Bsp1286I | GDGCHC | 6 cut(s) | 117, 165, 361, 775, 901, 1216 |
| Bsp13I | TCCGGA | 2 cut(s) | 48, 221 |
| Bsp143I | GATC | 5 cut(s) | 126, 418, 465, 1231, 1496 |
| BspANI | GGCC | 3 cut(s) | 180, 230, 314 |
| BspCNI | CTCAG | 2 cut(s) | 394, 1408 |
| BspEI | TCCGGA | 2 cut(s) | 48, 221 |
| BspFNI | CGCG | 3 cut(s) | 308, 329, 368 |
| BspLI | GGNNCC | 3 cut(s) | 44, 239, 420 |
| BspMI | ACCTGC | 2 cut(s) | 1602, 1613 |
| BspPI | GGATC | 3 cut(s) | 413, 426, 473 |
| BspT107I | GGYRCC | 1 cut(s) | 237 |
| BsrDI | GCAATG | 1 cut(s) | 1639 |
| BsrFI | RCCGGY | 1 cut(s) | 176 |
| BssAI | RCCGGY | 1 cut(s) | 176 |
| BssECI | CCNNGG | 6 cut(s) | 241, 306, 353, 1045, 1108, 1485 |
| BssMI | GATC | 5 cut(s) | 126, 418, 465, 1231, 1496 |
| BssNI | GRCGYC | 1 cut(s) | 238 |
| BssSI | CACGAG | 1 cut(s) | 1473 |
| Bst2BI | CACGAG | 1 cut(s) | 1473 |
| Bst2UI | CCWGG | 2 cut(s) | 167, 1487 |
| Bst4CI | ACNGT | 9 cut(s) | 291, 569, 920, 983, 1046, 1109, 1172, 1262, 1647 |
| Bst6I | CTCTTC | 1 cut(s) | 90 |
| BstACI | GRCGYC | 1 cut(s) | 238 |
| BstBAI | YACGTR | 3 cut(s) | 746, 839, 890 |
| BstC8I | GCNNGC | 5 cut(s) | 87, 174, 178, 775, 1052 |
| BstDEI | CTNAG | 3 cut(s) | 381, 798, 1416 |
| BstDSI | CCRYGG | 3 cut(s) | 306, 1045, 1108 |
| BstF5I | GGATG | 4 cut(s) | 35, 697, 1417, 1525 |
| BstFNI | CGCG | 3 cut(s) | 308, 329, 368 |
| BstH2I | RGCGCY | 1 cut(s) | 241 |
| BstHHI | GCGC | 2 cut(s) | 240, 352 |
| BstKTI | GATC | 5 cut(s) | 129, 421, 468, 1234, 1499 |
| BstMAI | GTCTC | 1 cut(s) | 1220 |
| BstMBI | GATC | 5 cut(s) | 126, 418, 465, 1231, 1496 |
| BstMCI | CGRYCG | 1 cut(s) | 315 |
| BstNI | CCWGG | 2 cut(s) | 167, 1487 |
| BstSCI | CCNGG | 5 cut(s) | 38, 165, 241, 352, 1485 |
| BstUI | CGCG | 3 cut(s) | 308, 329, 368 |
| BstV1I | GCAGC | 4 cut(s) | 307, 451, 1062, 1372 |
| BstV2I | GAAGAC | 3 cut(s) | 285, 1200, 1288 |
| BstX2I | RGATCY | 2 cut(s) | 418, 1496 |
| BstYI | RGATCY | 2 cut(s) | 418, 1496 |
| BstZI | CGGCCG | 1 cut(s) | 312 |
| BsuI | GTATCC | 1 cut(s) | 874 |
| BsuRI | GGCC | 3 cut(s) | 180, 230, 314 |
| BtgI | CCRYGG | 3 cut(s) | 306, 1045, 1108 |
| BtrI | CACGTC | 2 cut(s) | 902, 1217 |
| BtsCI | GGATG | 4 cut(s) | 35, 697, 1417, 1525 |
| BveI | ACCTGC | 2 cut(s) | 1602, 1613 |
| Cac8I | GCNNGC | 5 cut(s) | 87, 174, 178, 775, 1052 |
| CaiI | CAGNNNCTG | 1 cut(s) | 812 |
| CciNI | GCGGCCGC | 1 cut(s) | 312 |
| CfoI | GCGC | 2 cut(s) | 240, 352 |
| Cfr10I | RCCGGY | 1 cut(s) | 176 |
| Cfr42I | CCGCGG | 1 cut(s) | 309 |
| CseI | GACGC | 1 cut(s) | 1334 |
| CviAII | CATG | 8 cut(s) | 701, 731, 794, 857, 1235, 1286, 1315, 1424 |
| DdeI | CTNAG | 3 cut(s) | 381, 798, 1416 |
| DinI | GGCGCC | 1 cut(s) | 239 |
| DpnI | GATC | 5 cut(s) | 128, 420, 467, 1233, 1498 |
| DpnII | GATC | 5 cut(s) | 126, 418, 465, 1231, 1496 |
| EaeI | YGGCCR | 2 cut(s) | 228, 312 |
| EagI | CGGCCG | 1 cut(s) | 312 |
| Eam1104I | CTCTTC | 1 cut(s) | 90 |
| EarI | CTCTTC | 1 cut(s) | 90 |
| EciI | GGCGGA | 2 cut(s) | 89, 289 |
| Ecl136II | GAGCTC | 2 cut(s) | 115, 163 |
| EclXI | CGGCCG | 1 cut(s) | 312 |
| Eco24I | GRGCYC | 3 cut(s) | 117, 165, 361 |
| Eco52I | CGGCCG | 1 cut(s) | 312 |
| Eco53kI | GAGCTC | 2 cut(s) | 115, 163 |
| Eco57I | CTGAAG | 2 cut(s) | 834, 1638 |
| Eco72I | CACGTG | 1 cut(s) | 746 |
| EcoICRI | GAGCTC | 2 cut(s) | 115, 163 |
| EcoRII | CCWGG | 2 cut(s) | 165, 1485 |
| EcoT22I | ATGCAT | 1 cut(s) | 1639 |
| EcoT38I | GRGCYC | 3 cut(s) | 117, 165, 361 |
| EgeI | GGCGCC | 1 cut(s) | 239 |
| EheI | GGCGCC | 1 cut(s) | 239 |
| FaeI | CATG | 8 cut(s) | 704, 734, 797, 860, 1238, 1289, 1318, 1427 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 254, 286, 1499, 1531 |
| FaqI | GGGAC | 1 cut(s) | 170 |
| FatI | CATG | 8 cut(s) | 700, 730, 793, 856, 1234, 1285, 1314, 1423 |
| FokI | GGATG | 4 cut(s) | 42, 704, 1424, 1532 |
| FriOI | GRGCYC | 3 cut(s) | 117, 165, 361 |
| FspBI | CTAG | 1 cut(s) | 1533 |
| GlaI | GCGC | 2 cut(s) | 239, 351 |
| GsuI | CTGGAG | 1 cut(s) | 149 |
| HaeII | RGCGCY | 1 cut(s) | 241 |
| HaeIII | GGCC | 3 cut(s) | 180, 230, 314 |
| HapII | CCGG | 7 cut(s) | 39, 49, 177, 222, 243, 353, 589 |
| HgaI | GACGC | 1 cut(s) | 1334 |
| HhaI | GCGC | 2 cut(s) | 240, 352 |
| Hin1I | GRCGYC | 1 cut(s) | 238 |
| Hin1II | CATG | 8 cut(s) | 704, 734, 797, 860, 1238, 1289, 1318, 1427 |
| Hin6I | GCGC | 2 cut(s) | 238, 350 |
| HinP1I | GCGC | 2 cut(s) | 238, 350 |
| HindIII | AAGCTT | 1 cut(s) | 407 |
| HpaII | CCGG | 7 cut(s) | 39, 49, 177, 222, 243, 353, 589 |
| HphI | GGTGA | 3 cut(s) | 265, 626, 1637 |
| Hpy188III | TCNNGA | 4 cut(s) | 49, 222, 469, 484 |
| Hpy99I | CGWCG | 7 cut(s) | 113, 134, 906, 1221, 1350, 1590, 1647 |
| HpyAV | CCTTC | 8 cut(s) | 19, 64, 280, 325, 541, 605, 1447, 1546 |
| HpyCH4III | ACNGT | 9 cut(s) | 291, 569, 920, 983, 1046, 1109, 1172, 1262, 1647 |
| HpyCH4IV | ACGT | 8 cut(s) | 63, 745, 763, 838, 889, 901, 1216, 1444 |
| HpyCH4V | TGCA | 6 cut(s) | 1078, 1405, 1423, 1472, 1606, 1637 |
| HpyF3I | CTNAG | 3 cut(s) | 381, 798, 1416 |
| HpySE526I | ACGT | 8 cut(s) | 63, 745, 763, 838, 889, 901, 1216, 1444 |
| Hsp92I | GRCGYC | 1 cut(s) | 238 |
| Hsp92II | CATG | 8 cut(s) | 704, 734, 797, 860, 1238, 1289, 1318, 1427 |
| HspAI | GCGC | 2 cut(s) | 238, 350 |
| KasI | GGCGCC | 1 cut(s) | 237 |
| Kpn2I | TCCGGA | 2 cut(s) | 48, 221 |
| KroI | GCCGGC | 1 cut(s) | 176 |
| KroNI | GCCGGC | 1 cut(s) | 178 |
| KspI | CCGCGG | 1 cut(s) | 309 |
| Kzo9I | GATC | 5 cut(s) | 126, 418, 465, 1231, 1496 |
| LmnI | GCTCC | 5 cut(s) | 42, 76, 120, 168, 169 |
| Lsp1109I | GCAGC | 4 cut(s) | 307, 451, 1062, 1372 |
| LweI | GCATC | 7 cut(s) | 347, 385, 668, 1392, 1402, 1459, 1510 |
| MaeI | CTAG | 1 cut(s) | 1533 |
| MaeII | ACGT | 8 cut(s) | 63, 745, 763, 838, 889, 901, 1216, 1444 |
| MaeIII | GTNAC | 4 cut(s) | 539, 614, 741, 890 |
| MalI | GATC | 5 cut(s) | 128, 420, 467, 1233, 1498 |
| MboI | GATC | 5 cut(s) | 126, 418, 465, 1231, 1496 |
| MflI | RGATCY | 2 cut(s) | 418, 1496 |
| MhlI | GDGCHC | 6 cut(s) | 117, 165, 361, 775, 901, 1216 |
| MluCI | AATT | 4 cut(s) | 256, 821, 1136, 1510 |
| Mly113I | GGCGCC | 1 cut(s) | 238 |
| Mph1103I | ATGCAT | 1 cut(s) | 1639 |
| MroI | TCCGGA | 2 cut(s) | 48, 221 |
| MroNI | GCCGGC | 1 cut(s) | 176 |
| MseI | TTAA | 6 cut(s) | 435, 672, 735, 924, 987, 1527 |
| MslI | CAYNNNNRTG | 1 cut(s) | 717 |
| MspA1I | CMGCKG | 3 cut(s) | 308, 320, 623 |
| MspI | CCGG | 7 cut(s) | 39, 49, 177, 222, 243, 353, 589 |
| MspR9I | CCNGG | 5 cut(s) | 40, 167, 243, 354, 1487 |
| Mva1269I | GAATGC | 5 cut(s) | 676, 865, 1054, 1117, 1180 |
| MvaI | CCWGG | 2 cut(s) | 167, 1487 |
| MvnI | CGCG | 3 cut(s) | 308, 329, 368 |
| NaeI | GCCGGC | 1 cut(s) | 178 |
| NarI | GGCGCC | 1 cut(s) | 238 |
| NciI | CCSGG | 3 cut(s) | 40, 243, 354 |
| NdeII | GATC | 5 cut(s) | 126, 418, 465, 1231, 1496 |
| NgoMIV | GCCGGC | 1 cut(s) | 176 |
| NlaIII | CATG | 8 cut(s) | 704, 734, 797, 860, 1238, 1289, 1318, 1427 |
| NlaIV | GGNNCC | 3 cut(s) | 44, 239, 420 |
| NmeAIII | GCCGAG | 1 cut(s) | 1369 |
| NmuCI | GTSAC | 3 cut(s) | 539, 614, 741 |
| NotI | GCGGCCGC | 1 cut(s) | 312 |
| NsiI | ATGCAT | 1 cut(s) | 1639 |
| PaqCI | CACCTGC | 1 cut(s) | 1613 |
| PctI | GAATGC | 5 cut(s) | 676, 865, 1054, 1117, 1180 |
| PdiI | GCCGGC | 1 cut(s) | 178 |
| PfoI | TCCNGGA | 1 cut(s) | 165 |
| PluTI | GGCGCC | 1 cut(s) | 241 |
| PmaCI | CACGTG | 1 cut(s) | 746 |
| PmlI | CACGTG | 1 cut(s) | 746 |
| Ppu21I | YACGTR | 3 cut(s) | 746, 839, 890 |
| Psp124BI | GAGCTC | 2 cut(s) | 117, 165 |
| Psp1406I | AACGTT | 1 cut(s) | 1444 |
| Psp6I | CCWGG | 2 cut(s) | 165, 1485 |
| PspCI | CACGTG | 1 cut(s) | 746 |
| PspGI | CCWGG | 2 cut(s) | 165, 1485 |
| PspN4I | GGNNCC | 3 cut(s) | 44, 239, 420 |
| PstNI | CAGNNNCTG | 1 cut(s) | 812 |
| PsuI | RGATCY | 2 cut(s) | 418, 1496 |
| PvuII | CAGCTG | 1 cut(s) | 623 |
| RseI | CAYNNNNRTG | 1 cut(s) | 717 |
| SacI | GAGCTC | 2 cut(s) | 117, 165 |
| SacII | CCGCGG | 1 cut(s) | 309 |
| SaqAI | TTAA | 6 cut(s) | 435, 672, 735, 924, 987, 1527 |
| Sau3AI | GATC | 5 cut(s) | 126, 418, 465, 1231, 1496 |
| ScrFI | CCNGG | 5 cut(s) | 40, 167, 243, 354, 1487 |
| SduI | GDGCHC | 6 cut(s) | 117, 165, 361, 775, 901, 1216 |
| SfaNI | GCATC | 7 cut(s) | 347, 385, 668, 1392, 1402, 1459, 1510 |
| SfoI | GGCGCC | 1 cut(s) | 239 |
| Sfr303I | CCGCGG | 1 cut(s) | 309 |
| SgrBI | CCGCGG | 1 cut(s) | 309 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 717 |
| SpeI | ACTAGT | 1 cut(s) | 1532 |
| Sse9I | AATT | 4 cut(s) | 256, 821, 1136, 1510 |
| SspDI | GGCGCC | 1 cut(s) | 237 |
| SspMI | CTAG | 1 cut(s) | 1533 |
| SstI | GAGCTC | 2 cut(s) | 117, 165 |
| StyD4I | CCNGG | 5 cut(s) | 38, 165, 241, 352, 1485 |
| TaaI | ACNGT | 9 cut(s) | 291, 569, 920, 983, 1046, 1109, 1172, 1262, 1647 |
| TaiI | ACGT | 8 cut(s) | 66, 748, 766, 841, 892, 904, 1219, 1447 |
| TasI | AATT | 4 cut(s) | 256, 821, 1136, 1510 |
| TauI | GCSGC | 9 cut(s) | 92, 249, 305, 308, 311, 314, 317, 320, 371 |
| Tru1I | TTAA | 6 cut(s) | 435, 672, 735, 924, 987, 1527 |
| Tru9I | TTAA | 6 cut(s) | 435, 672, 735, 924, 987, 1527 |
| TseFI | GTSAC | 3 cut(s) | 539, 614, 741 |
| TseI | GCWGC | 4 cut(s) | 320, 439, 1075, 1385 |
| Tsp45I | GTSAC | 3 cut(s) | 539, 614, 741 |
| TspDTI | ATGAA | 8 cut(s) | 708, 717, 771, 834, 1149, 1302, 1344, 1440 |
| TspGWI | ACGGA | 2 cut(s) | 146, 1574 |
| XapI | RAATTY | 1 cut(s) | 1510 |
| XspI | CTAG | 1 cut(s) | 1533 |
| Zsp2I | ATGCAT | 1 cut(s) | 1639 |