RLG00000008185

Pre-mRNA-splicing factor cwc25

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
26704857 .. 26707184
2328 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008185

Sequence Viewer

Length: 1650 bp
ATGGCGTTGAAGTTTCTGAACAAGAAGGGATGGCACACCGGGAGCCTCCGGAACATAGAGAACGTGTGGAAGGCGGAGCAGAAGCACGCCGCCGAAGAGAAGAAACTCGACGAGCTCCGCAAACAGATCGTCGAAGAAAGAGAACGCTCGGAGTTCCGTGAGCTCCAGGAGCAAGCCGGCCTCGTCCCCAAGCAAGAGCGATTGGAGTTCCTCTACGATTCCGGATTGGCCGTAGGGCGCCCCGGCGGCTCTGATAATTTCAAGGAAGCCTTCACCAAAGCCGAAGAACCGTCTTCTTCCGCCGCCGCGGCGGCCGCCGCTGCCACCGCGAAGGAGGCATCATCGTCTGCGCCGGGGGCTCTGTTCGCGGCAGACAAGCCTCAGTCTGCCAATGATGCGTGGAGGAAGCTTCACTCGGATCCTTTGCTTATGATTAAGCAGCGAGAGCAGGAAGCACTCTCTCGGATCAAGAACAATCCTGTCCAGATGGCTATGATTCGCAAACAAGTTGAAGCAAAGAAGCCTAAAGAAAAAGAGCGTGACAAGAAGGAACATCGGAAGAAACACCGTAAAGATTCTTCAAAGCACCGGAAGCAAATGTCTGATTCAGAAGGTGACACAGCTGATATGGAAAGGAGGAAGAATAGTTATCGTAGGGCATCAAAATATGTTAAGCATTCAGAATCAGAGGATGAACTACATGAAAAAGCACATCGAAGTGAGAAGAACCATGTTAAGCAGTCACGTGTTGAAGATGAATCACGTTATAGAGCACGCCAAAGTGGGAAAACCCATGCTAAGTATTCAGATTCTGAAGATGAATTGCGTAGCAAAGCACGTAGTAATGATAAAAACCATGTTAGGCATTCAGATTTGGAGGATACATCACGTAACAGAGCACGTCGAAGTGAGAAGAACCGTGTTAAACATTCAGATTCAGAAGATGAGCTACATAATAGAAGAAGTCGAAGTGAGAAGAACCGTGTTAAACATTCAGATTCAGAAGATGAGCTACATAACAGAAGAAGTCGAAGTGAGAAGAACCGTGGCAAGCATTCAGATTCAGAAGATGAGCTGCATAACAGAAGAAGTCGAAGTGCGAGAAACCGTGGTAAGCATTCAGATTCAGAAGATGAATTACATAACAGAACAAGTCGAAGTGAGAAGAACCGTGTCAAGCATTCAGATTCAGAAGACGGGCTACATAACAGAGCACGTCGAAGTGAGACAGATCATGCTATAACAAGGGAAAAGGAGGACAGTCAAGGTATTGTCAAGGGAAGACATGAAAAGTCAGAACAAGAAAACTATTCCATGAGAGGTCGAAATGAATCCCACAACAAGCGTCGGTTTGTTCCACCTAAACTTTCAGAAGAAGAAAGAGCTGCTCGGCTAAAGGAGATGCAGATGGATGCTGAGTTGCATGAAGAACAAAGATGGAAACGTTTGAAGAAGGCTGATGAGAAAGATGCACGAGAAGCTACCCAGGCTATCAGATCTGGCGGTAAGAATTTCTTGGATGCTGTTAAAACTAGTGTTTATGGTTCTGGGAAGGGAGGAAGCTCAACAATAGAGGAGAGTGTCCGTCGCCGAACACATTATTTGCAGGGCAGGTCTGAAGCAGGTGAAAGCAATGCATTTCGACGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

550

Amino Acids

63.74

Weight (kDa)

9.78

Isoelectric Point (pI)

76.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cir_N PF10197 11 - 46 5.1e-14 N-terminal domain of CBF1 interacting co-repressor CIR
CWC25 PF12542 64 - 160 3.6e-15 Pre-mRNA splicing factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1613
Acc36I ACCTGC 2 cut(s) 1602, 1613
AccB1I GGYRCC 1 cut(s) 237
AccII CGCG 3 cut(s) 308, 329, 368
AccIII TCCGGA 2 cut(s) 48, 221
AclI AACGTT 1 cut(s) 1444
AclWI GGATC 3 cut(s) 413, 426, 473
AcoI YGGCCR 2 cut(s) 228, 312
AcsI RAATTY 1 cut(s) 1510
AcuI CTGAAG 2 cut(s) 834, 1638
AcvI CACGTG 1 cut(s) 746
AcyI GRCGYC 1 cut(s) 238
AflIII ACRYGT 2 cut(s) 63, 745
AgsI TTSAA 6 cut(s) 10, 262, 512, 582, 752, 1450
AhlI ACTAGT 1 cut(s) 1532
AjiI CACGTC 2 cut(s) 902, 1217
AjnI CCWGG 2 cut(s) 165, 1485
Alw21I GWGCWC 5 cut(s) 117, 165, 775, 901, 1216
Alw26I GTCTC 1 cut(s) 1220
AlwI GGATC 3 cut(s) 413, 426, 473
AlwNI CAGNNNCTG 1 cut(s) 812
Aor13HI TCCGGA 2 cut(s) 48, 221
AoxI GGCC 3 cut(s) 178, 228, 312
ApeKI GCWGC 4 cut(s) 320, 439, 1075, 1385
ApoI RAATTY 1 cut(s) 1510
ArsI GACNNNNNNTTYG 2 cut(s) 114, 146
AspLEI GCGC 2 cut(s) 240, 352
AsuC2I CCSGG 3 cut(s) 40, 243, 354
AsuHPI GGTGA 3 cut(s) 265, 626, 1637
BamHI GGATCC 1 cut(s) 418
BanI GGYRCC 1 cut(s) 237
BanII GRGCYC 3 cut(s) 117, 165, 361
BauI CACGAG 1 cut(s) 1473
BbrPI CACGTG 1 cut(s) 746
BbsI GAAGAC 3 cut(s) 285, 1200, 1288
Bbv12I GWGCWC 5 cut(s) 117, 165, 775, 901, 1216
BbvI GCAGC 4 cut(s) 307, 451, 1062, 1372
BccI CCATC 4 cut(s) 24, 481, 1402, 1431
BceAI ACGGC 1 cut(s) 215
BcgI CGANNNNNNTGC 2 cut(s) 109, 143
BciT130I CCWGG 2 cut(s) 167, 1487
BciVI GTATCC 1 cut(s) 874
BcnI CCSGG 3 cut(s) 40, 243, 354
BcoDI GTCTC 1 cut(s) 1220
BcuI ACTAGT 1 cut(s) 1532
BfaI CTAG 1 cut(s) 1533
BfoI RGCGCY 1 cut(s) 241
BfuAI ACCTGC 2 cut(s) 1602, 1613
BfuI GTATCC 1 cut(s) 874
BglI GCCNNNNNGGC 3 cut(s) 246, 308, 311
BglII AGATCT 1 cut(s) 1496
Bme1390I CCNGG 5 cut(s) 40, 167, 243, 354, 1487
BmgBI CACGTC 2 cut(s) 902, 1217
BmiI GGNNCC 3 cut(s) 44, 239, 420
BmrFI CCNGG 5 cut(s) 40, 167, 243, 354, 1487
BmsI GCATC 7 cut(s) 347, 385, 668, 1392, 1402, 1459, 1510
BpiI GAAGAC 3 cut(s) 285, 1200, 1288
BpmI CTGGAG 1 cut(s) 149
BpuMI CCSGG 3 cut(s) 40, 243, 354
BsaAI YACGTR 3 cut(s) 746, 839, 890
BsaHI GRCGYC 1 cut(s) 238
BsaJI CCNNGG 6 cut(s) 241, 306, 353, 1045, 1108, 1485
BsaWI WCCGGW 3 cut(s) 48, 221, 588
Bse118I RCCGGY 1 cut(s) 176
Bse3DI GCAATG 1 cut(s) 1639
BseAI TCCGGA 2 cut(s) 48, 221
BseBI CCWGG 2 cut(s) 167, 1487
BseDI CCNNGG 6 cut(s) 241, 306, 353, 1045, 1108, 1485
BseGI GGATG 4 cut(s) 35, 697, 1417, 1525
BseMI GCAATG 1 cut(s) 1639
BseMII CTCAG 2 cut(s) 395, 1407
BseRI GAGGAG 1 cut(s) 1589
BseX3I CGGCCG 1 cut(s) 312
BseXI GCAGC 4 cut(s) 307, 451, 1062, 1372
Bsh1236I CGCG 3 cut(s) 308, 329, 368
Bsh1285I CGRYCG 1 cut(s) 315
BshFI GGCC 3 cut(s) 180, 230, 314
BshNI GGYRCC 1 cut(s) 237
BsiEI CGRYCG 1 cut(s) 315
BsiHKAI GWGCWC 5 cut(s) 117, 165, 775, 901, 1216
BsiSI CCGG 7 cut(s) 39, 49, 177, 222, 243, 353, 589
BslFI GGGAC 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 1220
BsmFI GGGAC 1 cut(s) 170
BsmI GAATGC 5 cut(s) 676, 865, 1054, 1117, 1180
BsnI GGCC 3 cut(s) 180, 230, 314
Bsp1286I GDGCHC 6 cut(s) 117, 165, 361, 775, 901, 1216
Bsp13I TCCGGA 2 cut(s) 48, 221
Bsp143I GATC 5 cut(s) 126, 418, 465, 1231, 1496
BspANI GGCC 3 cut(s) 180, 230, 314
BspCNI CTCAG 2 cut(s) 394, 1408
BspEI TCCGGA 2 cut(s) 48, 221
BspFNI CGCG 3 cut(s) 308, 329, 368
BspLI GGNNCC 3 cut(s) 44, 239, 420
BspMI ACCTGC 2 cut(s) 1602, 1613
BspPI GGATC 3 cut(s) 413, 426, 473
BspT107I GGYRCC 1 cut(s) 237
BsrDI GCAATG 1 cut(s) 1639
BsrFI RCCGGY 1 cut(s) 176
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 6 cut(s) 241, 306, 353, 1045, 1108, 1485
BssMI GATC 5 cut(s) 126, 418, 465, 1231, 1496
BssNI GRCGYC 1 cut(s) 238
BssSI CACGAG 1 cut(s) 1473
Bst2BI CACGAG 1 cut(s) 1473
Bst2UI CCWGG 2 cut(s) 167, 1487
Bst4CI ACNGT 9 cut(s) 291, 569, 920, 983, 1046, 1109, 1172, 1262, 1647
Bst6I CTCTTC 1 cut(s) 90
BstACI GRCGYC 1 cut(s) 238
BstBAI YACGTR 3 cut(s) 746, 839, 890
BstC8I GCNNGC 5 cut(s) 87, 174, 178, 775, 1052
BstDEI CTNAG 3 cut(s) 381, 798, 1416
BstDSI CCRYGG 3 cut(s) 306, 1045, 1108
BstF5I GGATG 4 cut(s) 35, 697, 1417, 1525
BstFNI CGCG 3 cut(s) 308, 329, 368
BstH2I RGCGCY 1 cut(s) 241
BstHHI GCGC 2 cut(s) 240, 352
BstKTI GATC 5 cut(s) 129, 421, 468, 1234, 1499
BstMAI GTCTC 1 cut(s) 1220
BstMBI GATC 5 cut(s) 126, 418, 465, 1231, 1496
BstMCI CGRYCG 1 cut(s) 315
BstNI CCWGG 2 cut(s) 167, 1487
BstSCI CCNGG 5 cut(s) 38, 165, 241, 352, 1485
BstUI CGCG 3 cut(s) 308, 329, 368
BstV1I GCAGC 4 cut(s) 307, 451, 1062, 1372
BstV2I GAAGAC 3 cut(s) 285, 1200, 1288
BstX2I RGATCY 2 cut(s) 418, 1496
BstYI RGATCY 2 cut(s) 418, 1496
BstZI CGGCCG 1 cut(s) 312
BsuI GTATCC 1 cut(s) 874
BsuRI GGCC 3 cut(s) 180, 230, 314
BtgI CCRYGG 3 cut(s) 306, 1045, 1108
BtrI CACGTC 2 cut(s) 902, 1217
BtsCI GGATG 4 cut(s) 35, 697, 1417, 1525
BveI ACCTGC 2 cut(s) 1602, 1613
Cac8I GCNNGC 5 cut(s) 87, 174, 178, 775, 1052
CaiI CAGNNNCTG 1 cut(s) 812
CciNI GCGGCCGC 1 cut(s) 312
CfoI GCGC 2 cut(s) 240, 352
Cfr10I RCCGGY 1 cut(s) 176
Cfr42I CCGCGG 1 cut(s) 309
CseI GACGC 1 cut(s) 1334
CviAII CATG 8 cut(s) 701, 731, 794, 857, 1235, 1286, 1315, 1424
DdeI CTNAG 3 cut(s) 381, 798, 1416
DinI GGCGCC 1 cut(s) 239
DpnI GATC 5 cut(s) 128, 420, 467, 1233, 1498
DpnII GATC 5 cut(s) 126, 418, 465, 1231, 1496
EaeI YGGCCR 2 cut(s) 228, 312
EagI CGGCCG 1 cut(s) 312
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
EciI GGCGGA 2 cut(s) 89, 289
Ecl136II GAGCTC 2 cut(s) 115, 163
EclXI CGGCCG 1 cut(s) 312
Eco24I GRGCYC 3 cut(s) 117, 165, 361
Eco52I CGGCCG 1 cut(s) 312
Eco53kI GAGCTC 2 cut(s) 115, 163
Eco57I CTGAAG 2 cut(s) 834, 1638
Eco72I CACGTG 1 cut(s) 746
EcoICRI GAGCTC 2 cut(s) 115, 163
EcoRII CCWGG 2 cut(s) 165, 1485
EcoT22I ATGCAT 1 cut(s) 1639
EcoT38I GRGCYC 3 cut(s) 117, 165, 361
EgeI GGCGCC 1 cut(s) 239
EheI GGCGCC 1 cut(s) 239
FaeI CATG 8 cut(s) 704, 734, 797, 860, 1238, 1289, 1318, 1427
FalI AAGNNNNNCTT 4 cut(s) 254, 286, 1499, 1531
FaqI GGGAC 1 cut(s) 170
FatI CATG 8 cut(s) 700, 730, 793, 856, 1234, 1285, 1314, 1423
FokI GGATG 4 cut(s) 42, 704, 1424, 1532
FriOI GRGCYC 3 cut(s) 117, 165, 361
FspBI CTAG 1 cut(s) 1533
GlaI GCGC 2 cut(s) 239, 351
GsuI CTGGAG 1 cut(s) 149
HaeII RGCGCY 1 cut(s) 241
HaeIII GGCC 3 cut(s) 180, 230, 314
HapII CCGG 7 cut(s) 39, 49, 177, 222, 243, 353, 589
HgaI GACGC 1 cut(s) 1334
HhaI GCGC 2 cut(s) 240, 352
Hin1I GRCGYC 1 cut(s) 238
Hin1II CATG 8 cut(s) 704, 734, 797, 860, 1238, 1289, 1318, 1427
Hin6I GCGC 2 cut(s) 238, 350
HinP1I GCGC 2 cut(s) 238, 350
HindIII AAGCTT 1 cut(s) 407
HpaII CCGG 7 cut(s) 39, 49, 177, 222, 243, 353, 589
HphI GGTGA 3 cut(s) 265, 626, 1637
Hpy188III TCNNGA 4 cut(s) 49, 222, 469, 484
Hpy99I CGWCG 7 cut(s) 113, 134, 906, 1221, 1350, 1590, 1647
HpyAV CCTTC 8 cut(s) 19, 64, 280, 325, 541, 605, 1447, 1546
HpyCH4III ACNGT 9 cut(s) 291, 569, 920, 983, 1046, 1109, 1172, 1262, 1647
HpyCH4IV ACGT 8 cut(s) 63, 745, 763, 838, 889, 901, 1216, 1444
HpyCH4V TGCA 6 cut(s) 1078, 1405, 1423, 1472, 1606, 1637
HpyF3I CTNAG 3 cut(s) 381, 798, 1416
HpySE526I ACGT 8 cut(s) 63, 745, 763, 838, 889, 901, 1216, 1444
Hsp92I GRCGYC 1 cut(s) 238
Hsp92II CATG 8 cut(s) 704, 734, 797, 860, 1238, 1289, 1318, 1427
HspAI GCGC 2 cut(s) 238, 350
KasI GGCGCC 1 cut(s) 237
Kpn2I TCCGGA 2 cut(s) 48, 221
KroI GCCGGC 1 cut(s) 176
KroNI GCCGGC 1 cut(s) 178
KspI CCGCGG 1 cut(s) 309
Kzo9I GATC 5 cut(s) 126, 418, 465, 1231, 1496
LmnI GCTCC 5 cut(s) 42, 76, 120, 168, 169
Lsp1109I GCAGC 4 cut(s) 307, 451, 1062, 1372
LweI GCATC 7 cut(s) 347, 385, 668, 1392, 1402, 1459, 1510
MaeI CTAG 1 cut(s) 1533
MaeII ACGT 8 cut(s) 63, 745, 763, 838, 889, 901, 1216, 1444
MaeIII GTNAC 4 cut(s) 539, 614, 741, 890
MalI GATC 5 cut(s) 128, 420, 467, 1233, 1498
MboI GATC 5 cut(s) 126, 418, 465, 1231, 1496
MflI RGATCY 2 cut(s) 418, 1496
MhlI GDGCHC 6 cut(s) 117, 165, 361, 775, 901, 1216
MluCI AATT 4 cut(s) 256, 821, 1136, 1510
Mly113I GGCGCC 1 cut(s) 238
Mph1103I ATGCAT 1 cut(s) 1639
MroI TCCGGA 2 cut(s) 48, 221
MroNI GCCGGC 1 cut(s) 176
MseI TTAA 6 cut(s) 435, 672, 735, 924, 987, 1527
MslI CAYNNNNRTG 1 cut(s) 717
MspA1I CMGCKG 3 cut(s) 308, 320, 623
MspI CCGG 7 cut(s) 39, 49, 177, 222, 243, 353, 589
MspR9I CCNGG 5 cut(s) 40, 167, 243, 354, 1487
Mva1269I GAATGC 5 cut(s) 676, 865, 1054, 1117, 1180
MvaI CCWGG 2 cut(s) 167, 1487
MvnI CGCG 3 cut(s) 308, 329, 368
NaeI GCCGGC 1 cut(s) 178
NarI GGCGCC 1 cut(s) 238
NciI CCSGG 3 cut(s) 40, 243, 354
NdeII GATC 5 cut(s) 126, 418, 465, 1231, 1496
NgoMIV GCCGGC 1 cut(s) 176
NlaIII CATG 8 cut(s) 704, 734, 797, 860, 1238, 1289, 1318, 1427
NlaIV GGNNCC 3 cut(s) 44, 239, 420
NmeAIII GCCGAG 1 cut(s) 1369
NmuCI GTSAC 3 cut(s) 539, 614, 741
NotI GCGGCCGC 1 cut(s) 312
NsiI ATGCAT 1 cut(s) 1639
PaqCI CACCTGC 1 cut(s) 1613
PctI GAATGC 5 cut(s) 676, 865, 1054, 1117, 1180
PdiI GCCGGC 1 cut(s) 178
PfoI TCCNGGA 1 cut(s) 165
PluTI GGCGCC 1 cut(s) 241
PmaCI CACGTG 1 cut(s) 746
PmlI CACGTG 1 cut(s) 746
Ppu21I YACGTR 3 cut(s) 746, 839, 890
Psp124BI GAGCTC 2 cut(s) 117, 165
Psp1406I AACGTT 1 cut(s) 1444
Psp6I CCWGG 2 cut(s) 165, 1485
PspCI CACGTG 1 cut(s) 746
PspGI CCWGG 2 cut(s) 165, 1485
PspN4I GGNNCC 3 cut(s) 44, 239, 420
PstNI CAGNNNCTG 1 cut(s) 812
PsuI RGATCY 2 cut(s) 418, 1496
PvuII CAGCTG 1 cut(s) 623
RseI CAYNNNNRTG 1 cut(s) 717
SacI GAGCTC 2 cut(s) 117, 165
SacII CCGCGG 1 cut(s) 309
SaqAI TTAA 6 cut(s) 435, 672, 735, 924, 987, 1527
Sau3AI GATC 5 cut(s) 126, 418, 465, 1231, 1496
ScrFI CCNGG 5 cut(s) 40, 167, 243, 354, 1487
SduI GDGCHC 6 cut(s) 117, 165, 361, 775, 901, 1216
SfaNI GCATC 7 cut(s) 347, 385, 668, 1392, 1402, 1459, 1510
SfoI GGCGCC 1 cut(s) 239
Sfr303I CCGCGG 1 cut(s) 309
SgrBI CCGCGG 1 cut(s) 309
SmiMI CAYNNNNRTG 1 cut(s) 717
SpeI ACTAGT 1 cut(s) 1532
Sse9I AATT 4 cut(s) 256, 821, 1136, 1510
SspDI GGCGCC 1 cut(s) 237
SspMI CTAG 1 cut(s) 1533
SstI GAGCTC 2 cut(s) 117, 165
StyD4I CCNGG 5 cut(s) 38, 165, 241, 352, 1485
TaaI ACNGT 9 cut(s) 291, 569, 920, 983, 1046, 1109, 1172, 1262, 1647
TaiI ACGT 8 cut(s) 66, 748, 766, 841, 892, 904, 1219, 1447
TasI AATT 4 cut(s) 256, 821, 1136, 1510
TauI GCSGC 9 cut(s) 92, 249, 305, 308, 311, 314, 317, 320, 371
Tru1I TTAA 6 cut(s) 435, 672, 735, 924, 987, 1527
Tru9I TTAA 6 cut(s) 435, 672, 735, 924, 987, 1527
TseFI GTSAC 3 cut(s) 539, 614, 741
TseI GCWGC 4 cut(s) 320, 439, 1075, 1385
Tsp45I GTSAC 3 cut(s) 539, 614, 741
TspDTI ATGAA 8 cut(s) 708, 717, 771, 834, 1149, 1302, 1344, 1440
TspGWI ACGGA 2 cut(s) 146, 1574
XapI RAATTY 1 cut(s) 1510
XspI CTAG 1 cut(s) 1533
Zsp2I ATGCAT 1 cut(s) 1639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.