Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004456

Physical Location & Seq

Genomic Coordinates Reverse (-)

19762254 .. 19763460

Gene Structure 1207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g15830.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAGCGCCGGAAACGCGCCCCCGGCGAGTCCTTTTGCTTCGTCGTCGGCGTTGCCGGCAGGTGCGGGAGCGGCGAACGGAGGCGCGGCGGGTTCGGAGCCTGCAACGACGGCGGGGAAGCGGCCGGATTATATGTTGTCGGAGGAGGAGTTTCAGGTTCAGCTGGCGCTGGCGATCTGTGCTTCGAATTCCGACGCTCGCGATGATCCGGAGAATGATCAGATCCACGCGGTGACGATGCTTAGCTTGGGCGGCGGCGGGGGTGATCAGACGGGGGATGAGGCGGAGGTGGCGGCGGCGGAGACGTTGTCGAGGCACTATTGGGTGAGTTTGGTTGAAATTTTTGGTATTTGGTTGAAATTTGAGTTCATTGAGTTTTGGCGAGCAAATTGTAGTGTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_7 Helitron_like_N Pkinase Pkinase_Tyr REPA_OB_2 WW

Protein Analysis

135

Amino Acids

13.89

Weight (kDa)

4.21

Isoelectric Point (pI)

54.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08720 AT1G08720
fragaria_vesca	FvH4_4g15830 FvH4_6g03880 FvH4_6g03880 FvH4_6g03880 FvH4_6g03880 FvH4_6g03880 FvH4_6g03880 FvH4_6g03880
malus_domestica	MD04G1217700.v1.1 MD12G1234900.v1.1
prunus_persica	Prupe.6G337600_v2.0.a1 Prupe.6G337600_v2.0.a1 Prupe.6G337600_v2.0.a1
pyrus_communis	pycom04g19360 pycom12g21670
rosa_chinensis	RchiOBHm_Chr3g0452451
rosa_laevigata	RLG00000025601
rosa_multiflora	Rmu_co8196312.1_g000001 Rmu_co8510969.1_g000002 Rmu_sc0011680.1_g000007 Rmu_sc0017115.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429460
rosa_rugosa	Rorug02G0640900 Rorug02G0641000 Rorug02G0641000
rosa_samantha	Rh3AG042700 Rh3BG044400 Rh3CG043000 Rh3DG043800
rosa_wichuraiana	Rw3G003300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	50
Acc36I	ACCTGC	1 cut(s)	50
AccBSI	CCGCTC	1 cut(s)	71
AccII	CGCG	4 cut(s)	17, 86, 201, 230
AccIII	TCCGGA	1 cut(s)	208
AclWI	GGATC	2 cut(s)	200, 217
AcoI	YGGCCR	1 cut(s)	122
AcsI	RAATTY	3 cut(s)	187, 339, 359
AdeI	CACNNNGTG	1 cut(s)	232
AgsI	TTSAA	2 cut(s)	338, 358
AluBI	AGCT	2 cut(s)	163, 246
AluI	AGCT	2 cut(s)	163, 246
Alw26I	GTCTC	1 cut(s)	296
AlwI	GGATC	2 cut(s)	200, 217
Aor13HI	TCCGGA	1 cut(s)	208
AoxI	GGCC	1 cut(s)	122
ApoI	RAATTY	3 cut(s)	187, 339, 359
AspLEI	GCGC	4 cut(s)	8, 19, 86, 169
AsuC2I	CCSGG	1 cut(s)	23
AsuHPI	GGTGA	3 cut(s)	244, 275, 337
AsuII	TTCGAA	1 cut(s)	185
BceAI	ACGGC	1 cut(s)	126
BclI	TGATCA	2 cut(s)	217, 265
BcnI	CCSGG	1 cut(s)	23
BcoDI	GTCTC	1 cut(s)	296
BfoI	RGCGCY	2 cut(s)	9, 170
BfuAI	ACCTGC	1 cut(s)	50
BisI	GCNGC	7 cut(s)	72, 87, 122, 253, 256, 294, 297
BlpI	GCTNAGC	1 cut(s)	242
BlsI	GCNGC	7 cut(s)	73, 88, 123, 254, 257, 295, 298
Bme1390I	CCNGG	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	99
BmrFI	CCNGG	1 cut(s)	23
BmsI	GCATC	1 cut(s)	228
Bpu1102I	GCTNAGC	1 cut(s)	242
Bpu14I	TTCGAA	1 cut(s)	185
BpuMI	CCSGG	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	21
BsaWI	WCCGGW	1 cut(s)	208
BsaXI	ACNNNNNCTCC	4 cut(s)	134, 164, 293, 323
Bse118I	RCCGGY	1 cut(s)	55
BseAI	TCCGGA	1 cut(s)	208
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	1 cut(s)	283
BseRI	GAGGAG	2 cut(s)	158, 161
BseX3I	CGGCCG	1 cut(s)	122
Bsh1236I	CGCG	4 cut(s)	17, 86, 201, 230
Bsh1285I	CGRYCG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	124
BsiEI	CGRYCG	1 cut(s)	125
BsiSI	CCGG	5 cut(s)	9, 23, 56, 125, 209
BsmAI	GTCTC	1 cut(s)	296
BsmBI	CGTCTC	1 cut(s)	296
BsnI	GGCC	1 cut(s)	124
Bsp119I	TTCGAA	1 cut(s)	185
Bsp13I	TCCGGA	1 cut(s)	208
Bsp143I	GATC	5 cut(s)	174, 205, 217, 222, 265
Bsp1720I	GCTNAGC	1 cut(s)	242
Bsp68I	TCGCGA	1 cut(s)	201
BspANI	GGCC	1 cut(s)	124
BspEI	TCCGGA	1 cut(s)	208
BspFNI	CGCG	4 cut(s)	17, 86, 201, 230
BspLI	GGNNCC	1 cut(s)	99
BspMI	ACCTGC	1 cut(s)	50
BspPI	GGATC	2 cut(s)	200, 217
BspT104I	TTCGAA	1 cut(s)	185
BsrBI	CCGCTC	1 cut(s)	71
BsrFI	RCCGGY	1 cut(s)	55
BssAI	RCCGGY	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	5 cut(s)	174, 205, 217, 222, 265
BstBI	TTCGAA	1 cut(s)	185
BstC8I	GCNNGC	6 cut(s)	57, 102, 165, 171, 199, 384
BstDEI	CTNAG	1 cut(s)	242
BstF5I	GGATG	1 cut(s)	283
BstFNI	CGCG	4 cut(s)	17, 86, 201, 230
BstH2I	RGCGCY	2 cut(s)	9, 170
BstHHI	GCGC	4 cut(s)	8, 19, 86, 169
BstKTI	GATC	5 cut(s)	177, 208, 220, 225, 268
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	5 cut(s)	174, 205, 217, 222, 265
BstMCI	CGRYCG	1 cut(s)	125
BstMWI	GCNNNNNNNGC	8 cut(s)	14, 23, 56, 71, 110, 179, 252, 290
BstSCI	CCNGG	1 cut(s)	21
BstUI	CGCG	4 cut(s)	17, 86, 201, 230
BstX2I	RGATCY	1 cut(s)	222
BstYI	RGATCY	1 cut(s)	222
BstZI	CGGCCG	1 cut(s)	122
BsuRI	GGCC	1 cut(s)	124
BtgZI	GCGATG	1 cut(s)	216
BtsCI	GGATG	1 cut(s)	283
BtuMI	TCGCGA	1 cut(s)	201
BveI	ACCTGC	1 cut(s)	50
Cac8I	GCNNGC	6 cut(s)	57, 102, 165, 171, 199, 384
CfoI	GCGC	4 cut(s)	8, 19, 86, 169
Cfr10I	RCCGGY	1 cut(s)	55
CseI	GACGC	1 cut(s)	203
CviJI	RGCY	4 cut(s)	100, 124, 163, 246
CviKI_1	RGCY	4 cut(s)	100, 124, 163, 246
DdeI	CTNAG	1 cut(s)	242
DpnI	GATC	5 cut(s)	176, 207, 219, 224, 267
DpnII	GATC	5 cut(s)	174, 205, 217, 222, 265
DraIII	CACNNNGTG	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	122
EagI	CGGCCG	1 cut(s)	122
EciI	GGCGGA	2 cut(s)	299, 314
EclXI	CGGCCG	1 cut(s)	122
Eco52I	CGGCCG	1 cut(s)	122
EcoRI	GAATTC	1 cut(s)	187
Esp3I	CGTCTC	1 cut(s)	296
FaiI	YATR	2 cut(s)	132, 134
FauI	CCCGC	4 cut(s)	58, 82, 106, 251
FbaI	TGATCA	2 cut(s)	217, 265
Fnu4HI	GCNGC	7 cut(s)	72, 87, 122, 253, 256, 294, 297
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	7 cut(s)	72, 87, 122, 253, 256, 294, 297
GlaI	GCGC	4 cut(s)	7, 18, 85, 168
GluI	GCNGC	7 cut(s)	72, 87, 122, 253, 256, 294, 297
HaeII	RGCGCY	2 cut(s)	9, 170
HaeIII	GGCC	1 cut(s)	124
HapII	CCGG	5 cut(s)	9, 23, 56, 125, 209
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	4 cut(s)	8, 19, 86, 169
Hin6I	GCGC	4 cut(s)	6, 17, 84, 167
HinP1I	GCGC	4 cut(s)	6, 17, 84, 167
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	5 cut(s)	9, 23, 56, 125, 209
HphI	GGTGA	3 cut(s)	244, 275, 337
Hpy188I	TCNGA	5 cut(s)	97, 142, 193, 222, 270
Hpy188III	TCNNGA	2 cut(s)	200, 209
Hpy99I	CGWCG	4 cut(s)	46, 49, 112, 197
HpyCH4IV	ACGT	1 cut(s)	305
HpyCH4V	TGCA	1 cut(s)	104
HpyF10VI	GCNNNNNNNGC	8 cut(s)	14, 23, 56, 71, 110, 179, 252, 290
HpyF3I	CTNAG	1 cut(s)	242
HpySE526I	ACGT	1 cut(s)	305
HspAI	GCGC	4 cut(s)	6, 17, 84, 167
Kpn2I	TCCGGA	1 cut(s)	208
KroI	GCCGGC	1 cut(s)	55
KroNI	GCCGGC	1 cut(s)	57
Ksp22I	TGATCA	2 cut(s)	217, 265
Kzo9I	GATC	5 cut(s)	174, 205, 217, 222, 265
LmnI	GCTCC	2 cut(s)	68, 97
LweI	GCATC	1 cut(s)	228
MaeII	ACGT	1 cut(s)	305
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	5 cut(s)	176, 207, 219, 224, 267
MbiI	CCGCTC	1 cut(s)	71
MboI	GATC	5 cut(s)	174, 205, 217, 222, 265
MflI	RGATCY	1 cut(s)	222
MluCI	AATT	5 cut(s)	187, 339, 359, 388, 400
MlyI	GAGTC	1 cut(s)	37
MmeI	TCCRAC	2 cut(s)	120, 216
MnlI	CCTC	6 cut(s)	74, 136, 139, 274, 280, 306
MroI	TCCGGA	1 cut(s)	208
MroNI	GCCGGC	1 cut(s)	55
MseI	TTAA	1 cut(s)	399
MspA1I	CMGCKG	1 cut(s)	163
MspI	CCGG	5 cut(s)	9, 23, 56, 125, 209
MspR9I	CCNGG	1 cut(s)	23
MvnI	CGCG	4 cut(s)	17, 86, 201, 230
MwoI	GCNNNNNNNGC	8 cut(s)	14, 23, 56, 71, 110, 179, 252, 290
NaeI	GCCGGC	1 cut(s)	57
NciI	CCSGG	1 cut(s)	23
NdeII	GATC	5 cut(s)	174, 205, 217, 222, 265
NgoMIV	GCCGGC	1 cut(s)	55
NlaIV	GGNNCC	1 cut(s)	99
NmuCI	GTSAC	1 cut(s)	232
NruI	TCGCGA	1 cut(s)	201
NspV	TTCGAA	1 cut(s)	185
PaqCI	CACCTGC	1 cut(s)	50
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PdiI	GCCGGC	1 cut(s)	57
PflFI	GACNNNGTC	1 cut(s)	307
PkrI	GCNGC	7 cut(s)	73, 88, 123, 254, 257, 295, 298
PleI	GAGTC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	99
PsuI	RGATCY	1 cut(s)	222
PsyI	GACNNNGTC	1 cut(s)	307
PvuII	CAGCTG	1 cut(s)	163
RruI	TCGCGA	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	7 cut(s)	72, 87, 122, 253, 256, 294, 297
Sau3AI	GATC	5 cut(s)	174, 205, 217, 222, 265
SchI	GAGTC	1 cut(s)	37
ScrFI	CCNGG	1 cut(s)	23
SetI	ASST	6 cut(s)	64, 159, 165, 248, 291, 308
SfaNI	GCATC	1 cut(s)	228
SfuI	TTCGAA	1 cut(s)	185
Sse9I	AATT	5 cut(s)	187, 339, 359, 388, 400
StyD4I	CCNGG	1 cut(s)	21
TaiI	ACGT	1 cut(s)	308
TaqI	TCGA	2 cut(s)	185, 311
TasI	AATT	5 cut(s)	187, 339, 359, 388, 400
TauI	GCSGC	7 cut(s)	74, 89, 124, 255, 258, 296, 299
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TseFI	GTSAC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	1 cut(s)	358
TspGWI	ACGGA	1 cut(s)	93
Tth111I	GACNNNGTC	1 cut(s)	307
XapI	RAATTY	3 cut(s)	187, 339, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.