RLG00000025601

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0004456
Physical Location & Seq
Reverse (-)
47021089 .. 47029275
8187 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025601

Sequence Viewer

Length: 2937 bp
ATGAAGCACATTTTCAAGAAGCTTCATATAGGGAGCAACCACGACCCGGCAGCTCGATCGAACGAGCCACCAACAGCGTTGACGTCACCTTCACTGTCATGCGACTCCGATCACCGTCAGAGCGCCGGGAACCATCCCCAGGCGAGTGCTTTTTCTTCGTCTTCGTCGTCGTCGCCGGCGGGGGCGGTACCGGCGAACGGAGGTGTAGGTACCAATTCTGAGTCGTCTGCGACGGCCACGACCGGGAATCGGCCGGACTATATGTTGTCGGAGGAGGAGTTTCAGGTGCAGCTTGCGCTGGCGATCAGTGCTTCGAATTCGGATGATCCGGAGAAGGATCAGATCCGCGCGGCGACCATGCTGAGCTTGGGCGGCGGCCGTCGTGGTGGTGATCAGACGGGGGATGAGGTGGATGCGGCCGCCGCGGAGACCTTGTCCAGGCACTATTGGGAATACAGTGTGCTAGACTACGACGAAAAAGTGGTTGATGGGTTTTATGATGTATATGGACTTTCCACGGACTCTGCAGTACAAGGAAAAATGCCTTCTCTCGCAAATCTTGAAACAAACCTTGGGAGATCTGGATTTGAAGTTTCATTAGTAAATCGAACTCTTGATCCTACCTTGGAAGAGTTGGTGCAAATTGCACAGTGTATTGCGGTAGACTGCCCCATCACCAATGTTGGAATTTTGGTACAGAGGCTTGCTGAACTCGTTAGCGGACATATGGGCGGGCCTGTAAAGGATGCTAATATCATCTTGGCGAGGTGGATGGAAAGAAGTTCAGAGTTGAGGGCATCTTCACAAACAATTGTACTACCTATTGGGTCCATAACCATTGGCCTCTCCCGACATCGTGCTTTACTTTTCAAGGTATTAGCTGACAGCATCAAGATGCCTTGCAGGCTGCTTAAGGGTGTGCACTACACAGGTGTCGAGGATGGTGCTATTAATGTAGTAAAGTTGGAGGATGACAGGGAGTTTATGGTGGATCTTATGGCTGATCCTGGAACACTCATACCAGCTGACAATCCAAGTGCAAAGGACACTACTTTCAAGCCAATCAATCCGAAATCGAACACAATCCCAACTTTCCCTTCTTTGATTGATTCTGAAATTGTGTACTCACGACCAAAGCCATTACATGGAGAGGGAAGCAGCCAAAACTTGCAAACTTCTGAGAAAGCAGAATCATTCTGGGGTGAAATTGGCGGCAGAGGAGTTGGTTCTTCTGGAGTCCCCAAGAGAGGAACTCAATTAGATCATCTTCCCTCGTCAGCTTTCGAAAGTTCACGGTACAGAGGGAACCGTGGCGCCCCTGCAGTTGATGGTGTGAGGATGAATCAAAATATAGTTCCATATGCTCAAAATAACTCGGAAGACTCTAACAGTCTTTTTGCAGATCTTAACCCATTCCAAGTAAAAGGAACTGGGAAAGCTCCTATGTATAACAAACCTATGGAGAATAAGGCCGATGAGCTTCAGAGACCAAGAAATAATCTTGCCTCATACACAAAAAATGTTCGTGCACACAATGAAGTCCCGAAAAAGAAGGAGTATGATTATTTGGATGGAATTATCCCAAGAGTTAACCGAGAACCCAATGGTTATAATCCGTCATCTTCAGCTTCTACCAGCTCCACTAAATCTGAACAGATCAATGCTGGTGGTTTCAAATCTACTGCACATCCAAATGTGTCTGAGTATTTACAAAGTGGCTCTGTAGAACGTGAGAATAATATAAATGGCTTCCATGATCGAAGAAAGTTCACTCATGAAAGATTCATGGAGACCAATTCCAAACTGAAGGATCCAGAAAGTTGCAACTCATCCTTTGATTCCATAACAAGTAGGGTTGAGCATGTATTTGAGGATGTTGAGGTAGGTGAAAGTGAAATTCCGTGGGAAGACCTGGTTATTGGAGAAAGAATTGGACTTGGTTCATATGGAGAGGTGTACCATGCTGACTGGAATGGCACAGAAGTTGCTGTGAAGAAGTTCCTAGACCAGGATTTCTCGGGTGCTGCTTTGGCTGAGTTCAAAAGAGAAGTACGGATAATGCGTAGGCTGCGCCATCCAAATGTTGTGCTTTTTATGGGTGCTATTACGCGTCCTCCTAACCTCTCTATCATTACAGAGTTCCTTCCAAGGGGAAGTCTGTATCGGATTATCCATCGTCCTCATTGTCAAATTGAAGAGAGACGAAGATTAAAGATGGCTCTTGATGTGGCAAGGGGTATGAATTGCTTGCATTCGAGCAACCCCACTATTGTTCACCGGGATTTGAAATCTCCAAATCTATTGGTTGATAAGAACTGGAATGTGAAGGTAGGTGATTTTGGACTGTCGCGCTTGAAACATAACACTTTCTTGTCCTCCAAATCAACTGCTGGAACGCCTGAGTGGATGGCACCAGAAGTTCTGCGCAACGAAAACTCAAATGAAAAGTGTGATGTATATAGCTTTGGAGTAATTTTGTGGGAACTTGCTACTCTAAAATTGCCTTGGAGTGGGATGAACCCGATGCAAGTTGTGGGTGCGGTGGGTTTCCAGAATCGCCGCCTTGACATCCCTAAAGAAGTTGATCCCCCTGTTGCAAGGATAATTTGGCAATGCTGGCAGACTGAGCCAAACTCGCGCCCCTCGTTTTCAGAGCTCACGGTAGCTCTCAAGCCCCTGCAACGGCTTGTCACGCCACCAAATATGGACCAGCCCAGCTCACCTCTACGACAAGGGATCTCAAAGCTCTGGCTATTGGAGAAGCTAGCCAACACATTCCCATTGCAGGACATTTTCATTTCTTCCGACTCCCAAGATATTATCAACTCTCTTAGACGAAATGACCCTGCTTTGGATTGGACAGCGACATATCACCCTCCTCCTCCCTTAGCTGAAGTTCTTGTGTTTGATGGTTTACCCGGTCCTCCTCACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000165 GO:0000186 GO:0001101 GO:0001932 GO:0001934 GO:0002229 GO:0002239 GO:0002831 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005769 GO:0005783 GO:0005794 GO:0005798 GO:0005802 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009787 GO:0009788 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0010648 GO:0012505 GO:0012506 GO:0012510 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0030665 GO:0031090 GO:0031323 GO:0031325 GO:0031347 GO:0031399 GO:0031401 GO:0031410 GO:0031982 GO:0031984 GO:0032101 GO:0032147 GO:0032268 GO:0032270 GO:0033674 GO:0035556 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0043900 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0080134 GO:0097708 GO:0098542 GO:0098588 GO:0098791 GO:0098805 GO:0140096 GO:1900150 GO:1900424 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902531 GO:1902533 GO:1905957 GO:1905958 GO:2000031 GO:2001023 GO:2001038
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EDR1 Pkinase_Tyr

Protein Analysis

979

Amino Acids

107.82

Weight (kDa)

5.97

Isoelectric Point (pI)

48.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR1_CTR1_ARMC3_pept PF14381 142 - 340 7.8e-74 EDR1/CTR1/ARMC3, peptidase-like
PK_Tyr_Ser-Thr PF07714 639 - 888 6e-64 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 640 - 886 3.2e-51 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1611
AatII GACGTC 1 cut(s) 86
Acc16I TGCGCA 1 cut(s) 2426
Acc65I GGTACC 2 cut(s) 187, 209
AccB1I GGYRCC 4 cut(s) 187, 209, 1313, 2410
AccB7I CCANNNNNTGG 1 cut(s) 1145
AccI GTMKAC 1 cut(s) 663
AccII CGCG 6 cut(s) 348, 350, 425, 2110, 2350, 2638
AccIII TCCGGA 1 cut(s) 328
AcoI YGGCCR 4 cut(s) 234, 251, 376, 417
AcsI RAATTY 3 cut(s) 316, 687, 1896
AcuI CTGAAG 4 cut(s) 1466, 1608, 1826, 2913
AcyI GRCGYC 2 cut(s) 83, 1314
AfaI GTAC 9 cut(s) 189, 211, 531, 696, 816, 1124, 1298, 1958, 2052
AflII CTTAAG 1 cut(s) 911
AflIII ACRYGT 1 cut(s) 2108
AjnI CCWGG 5 cut(s) 138, 437, 1006, 1911, 2007
AjuI GAANNNNNNNTTGG 4 cut(s) 555, 587, 1081, 1113
AloI GAACNNNNNNTCC 2 cut(s) 601, 633
Alw21I GWGCWC 3 cut(s) 924, 1531, 2658
Alw26I GTCTC 4 cut(s) 422, 1480, 1784, 2194
Alw44I GTGCAC 2 cut(s) 920, 1527
Ama87I CYCGRG 1 cut(s) 2017
Aor13HI TCCGGA 1 cut(s) 328
AoxI GGCC 7 cut(s) 234, 251, 376, 417, 734, 841, 1470
ApaLI GTGCAC 2 cut(s) 920, 1527
ApeKI GCWGC 6 cut(s) 50, 289, 907, 1158, 2024, 2068
ApoI RAATTY 3 cut(s) 316, 687, 1896
AseI ATTAAT 1 cut(s) 951
Asp700I GAANNNNTTC 1 cut(s) 1997
Asp718I GGTACC 2 cut(s) 187, 209
AspLEI GCGC 8 cut(s) 125, 298, 350, 1316, 2073, 2352, 2427, 2640
AspS9I GGNCC 4 cut(s) 734, 828, 2707, 2921
AsuC2I CCSGG 5 cut(s) 47, 127, 244, 2279, 2919
AsuII TTCGAA 2 cut(s) 314, 1284
AsuNHI GCTAGC 1 cut(s) 2764
AvaI CYCGRG 1 cut(s) 2017
AvaII GGWCC 3 cut(s) 828, 2707, 2921
BaeGI GKGCMC 2 cut(s) 924, 1531
BamHI GGATCC 1 cut(s) 1810
BanI GGYRCC 4 cut(s) 187, 209, 1313, 2410
BanII GRGCYC 1 cut(s) 2658
BbsI GAAGAC 3 cut(s) 153, 1386, 1914
Bbv12I GWGCWC 3 cut(s) 924, 1531, 2658
BbvI GCAGC 6 cut(s) 62, 301, 894, 1170, 2011, 2055
BceAI ACGGC 3 cut(s) 249, 363, 2699
BcgI CGANNNNNNTGC 4 cut(s) 39, 73, 926, 960
BciT130I CCWGG 5 cut(s) 140, 439, 1008, 1913, 2009
BclI TGATCA 1 cut(s) 391
BcnI CCSGG 5 cut(s) 47, 127, 244, 2279, 2919
BcoDI GTCTC 4 cut(s) 422, 1480, 1784, 2194
BfaI CTAG 3 cut(s) 464, 2003, 2765
BfmI CTRYAG 3 cut(s) 525, 1320, 1722
BfoI RGCGCY 2 cut(s) 126, 1317
BfrI CTTAAG 1 cut(s) 911
BglI GCCNNNNNGGC 1 cut(s) 904
BglII AGATCT 2 cut(s) 578, 1402
BlpI GCTNAGC 1 cut(s) 362
Bme18I GGWCC 3 cut(s) 828, 2707, 2921
BmeT110I CYCGRG 1 cut(s) 2017
BmgT120I GGNCC 4 cut(s) 734, 828, 2707, 2921
BmiI GGNNCC 8 cut(s) 131, 189, 211, 829, 1307, 1315, 1812, 2412
BmrI ACTGGG 1 cut(s) 1440
BmsI GCATC 6 cut(s) 403, 736, 806, 885, 897, 2514
BmtI GCTAGC 1 cut(s) 2768
BmuI ACTGGG 1 cut(s) 1440
BpiI GAAGAC 3 cut(s) 153, 1386, 1914
BplI GAGNNNNNCTC 4 cut(s) 1237, 1269, 2618, 2650
BpmI CTGGAG 1 cut(s) 1254
Bpu10I CCTNAGC 1 cut(s) 2887
Bpu1102I GCTNAGC 1 cut(s) 362
Bpu14I TTCGAA 2 cut(s) 314, 1284
BpuEI CTTGAG 1 cut(s) 2654
BpuMI CCSGG 5 cut(s) 47, 127, 244, 2279, 2919
BsaHI GRCGYC 2 cut(s) 83, 1314
BsaI GGTCTC 3 cut(s) 422, 1480, 1784
BsaJI CCNNGG 9 cut(s) 138, 423, 516, 571, 624, 1309, 1901, 2147, 2504
BsaWI WCCGGW 1 cut(s) 328
BsaXI ACNNNNNCTCC 6 cut(s) 263, 293, 419, 449, 2098, 2128
Bse118I RCCGGY 2 cut(s) 175, 190
Bse1I ACTGG 3 cut(s) 1435, 1973, 2321
Bse3DI GCAATG 2 cut(s) 2618, 2780
BseAI TCCGGA 1 cut(s) 328
BseBI CCWGG 5 cut(s) 140, 439, 1008, 1913, 2009
BseDI CCNNGG 9 cut(s) 138, 423, 516, 571, 624, 1309, 1901, 2147, 2504
BseMI GCAATG 2 cut(s) 2618, 2780
BseMII CTCAG 7 cut(s) 210, 353, 1170, 1692, 2025, 2391, 2616
BseNI ACTGG 3 cut(s) 1435, 1973, 2321
BseRI GAGGAG 6 cut(s) 287, 290, 1233, 2868, 2871, 2916
BseSI GKGCMC 2 cut(s) 924, 1531
BseX3I CGGCCG 3 cut(s) 251, 376, 417
BseXI GCAGC 6 cut(s) 62, 301, 894, 1170, 2011, 2055
BseYI CCCAGC 1 cut(s) 2714
BsgI GTGCAG 2 cut(s) 308, 1668
Bsh1236I CGCG 6 cut(s) 348, 350, 425, 2110, 2350, 2638
Bsh1285I CGRYCG 5 cut(s) 59, 243, 254, 379, 420
BshFI GGCC 7 cut(s) 236, 253, 378, 419, 736, 843, 1472
BshNI GGYRCC 4 cut(s) 187, 209, 1313, 2410
BsiEI CGRYCG 5 cut(s) 59, 243, 254, 379, 420
BsiHKAI GWGCWC 3 cut(s) 924, 1531, 2658
BsiHKCI CYCGRG 1 cut(s) 2017
BsiSI CCGG 9 cut(s) 47, 126, 176, 191, 243, 254, 329, 2278, 2919
BslFI GGGAC 2 cut(s) 1223, 1526
BsmAI GTCTC 4 cut(s) 422, 1480, 1784, 2194
BsmBI CGTCTC 1 cut(s) 2194
BsmFI GGGAC 2 cut(s) 1223, 1526
BsmI GAATGC 1 cut(s) 2251
BsnI GGCC 7 cut(s) 236, 253, 378, 419, 736, 843, 1472
Bso31I GGTCTC 3 cut(s) 422, 1480, 1784
BsoBI CYCGRG 1 cut(s) 2017
Bsp119I TTCGAA 2 cut(s) 314, 1284
Bsp1286I GDGCHC 3 cut(s) 924, 1531, 2658
Bsp13I TCCGGA 1 cut(s) 328
Bsp1720I GCTNAGC 1 cut(s) 362
BspANI GGCC 7 cut(s) 236, 253, 378, 419, 736, 843, 1472
BspCNI CTCAG 7 cut(s) 211, 354, 1171, 1693, 2026, 2392, 2617
BspEI TCCGGA 1 cut(s) 328
BspFNI CGCG 6 cut(s) 348, 350, 425, 2110, 2350, 2638
BspHI TCATGA 1 cut(s) 1774
BspLI GGNNCC 8 cut(s) 131, 189, 211, 829, 1307, 1315, 1812, 2412
BspMAI CTGCAG 2 cut(s) 529, 1324
BspOI GCTAGC 1 cut(s) 2768
BspT104I TTCGAA 2 cut(s) 314, 1284
BspT107I GGYRCC 4 cut(s) 187, 209, 1313, 2410
BspTI CTTAAG 1 cut(s) 911
BspTNI GGTCTC 3 cut(s) 422, 1480, 1784
BsrDI GCAATG 2 cut(s) 2618, 2780
BsrFI RCCGGY 2 cut(s) 175, 190
BsrI ACTGG 3 cut(s) 1435, 1973, 2321
BssAI RCCGGY 2 cut(s) 175, 190
BssECI CCNNGG 9 cut(s) 138, 423, 516, 571, 624, 1309, 1901, 2147, 2504
BssNI GRCGYC 2 cut(s) 83, 1314
BssT1I CCWWGG 4 cut(s) 571, 624, 2147, 2504
Bst2UI CCWGG 5 cut(s) 140, 439, 1008, 1913, 2009
Bst4CI ACNGT 9 cut(s) 96, 116, 458, 651, 1296, 1310, 1391, 2346, 2662
Bst6I CTCTTC 2 cut(s) 624, 2190
BstACI GRCGYC 2 cut(s) 83, 1314
BstAFI CTTAAG 1 cut(s) 911
BstBI TTCGAA 2 cut(s) 314, 1284
BstC8I GCNNGC 9 cut(s) 177, 294, 300, 705, 734, 905, 2249, 2618, 2766
BstDEI CTNAG 9 cut(s) 219, 362, 1179, 1701, 2034, 2400, 2625, 2831, 2887
BstDSI CCRYGG 4 cut(s) 423, 516, 1309, 1901
BstENI CCTNNNNNAGG 2 cut(s) 436, 2006
BstFNI CGCG 6 cut(s) 348, 350, 425, 2110, 2350, 2638
BstH2I RGCGCY 2 cut(s) 126, 1317
BstHHI GCGC 8 cut(s) 125, 298, 350, 1316, 2073, 2352, 2427, 2640
BstMAI GTCTC 4 cut(s) 422, 1480, 1784, 2194
BstMCI CGRYCG 5 cut(s) 59, 243, 254, 379, 420
BstNI CCWGG 5 cut(s) 140, 439, 1008, 1913, 2009
BstNSI RCATGY 1 cut(s) 1865
BstSFI CTRYAG 3 cut(s) 525, 1320, 1722
BstSLI GKGCMC 2 cut(s) 924, 1531
BstUI CGCG 6 cut(s) 348, 350, 425, 2110, 2350, 2638
BstV1I GCAGC 6 cut(s) 62, 301, 894, 1170, 2011, 2055
BstV2I GAAGAC 3 cut(s) 153, 1386, 1914
BstX2I RGATCY 6 cut(s) 342, 578, 991, 1402, 1810, 2736
BstYI RGATCY 6 cut(s) 342, 578, 991, 1402, 1810, 2736
BstZI CGGCCG 3 cut(s) 251, 376, 417
BsuRI GGCC 7 cut(s) 236, 253, 378, 419, 736, 843, 1472
BtgI CCRYGG 4 cut(s) 423, 516, 1309, 1901
BtsIMutI CAGTG 4 cut(s) 92, 313, 463, 656
Cac8I GCNNGC 9 cut(s) 177, 294, 300, 705, 734, 905, 2249, 2618, 2766
CciI TCATGA 1 cut(s) 1774
CciNI GCGGCCGC 1 cut(s) 417
CfoI GCGC 8 cut(s) 125, 298, 350, 1316, 2073, 2352, 2427, 2640
Cfr10I RCCGGY 2 cut(s) 175, 190
Cfr13I GGNCC 4 cut(s) 734, 828, 2707, 2921
Cfr42I CCGCGG 1 cut(s) 426
CseI GACGC 1 cut(s) 2099
CsiI ACCWGGT 1 cut(s) 1911
Csp6I GTAC 9 cut(s) 188, 210, 530, 695, 815, 1123, 1297, 1957, 2051
CspCI CAANNNNNGTGG 2 cut(s) 1648, 1683
CviAII CATG 8 cut(s) 99, 358, 1145, 1754, 1775, 1786, 1862, 1961
CviQI GTAC 9 cut(s) 188, 210, 530, 695, 815, 1123, 1297, 1957, 2051
DdeI CTNAG 9 cut(s) 219, 362, 1179, 1701, 2034, 2400, 2625, 2831, 2887
DinI GGCGCC 1 cut(s) 1315
EaeI YGGCCR 4 cut(s) 234, 251, 376, 417
EagI CGGCCG 3 cut(s) 251, 376, 417
Eam1104I CTCTTC 2 cut(s) 624, 2190
EarI CTCTTC 2 cut(s) 624, 2190
Ecl136II GAGCTC 1 cut(s) 2656
EclXI CGGCCG 3 cut(s) 251, 376, 417
Eco130I CCWWGG 4 cut(s) 571, 624, 2147, 2504
Eco24I GRGCYC 1 cut(s) 2658
Eco31I GGTCTC 3 cut(s) 422, 1480, 1784
Eco47I GGWCC 3 cut(s) 828, 2707, 2921
Eco52I CGGCCG 3 cut(s) 251, 376, 417
Eco53kI GAGCTC 1 cut(s) 2656
Eco57I CTGAAG 4 cut(s) 1466, 1608, 1826, 2913
Eco88I CYCGRG 1 cut(s) 2017
EcoICRI GAGCTC 1 cut(s) 2656
EcoNI CCTNNNNNAGG 2 cut(s) 436, 2006
EcoRI GAATTC 1 cut(s) 316
EcoRII CCWGG 5 cut(s) 138, 437, 1006, 1911, 2007
EcoT14I CCWWGG 4 cut(s) 571, 624, 2147, 2504
EcoT38I GRGCYC 1 cut(s) 2658
EgeI GGCGCC 1 cut(s) 1315
EheI GGCGCC 1 cut(s) 1315
ErhI CCWWGG 4 cut(s) 571, 624, 2147, 2504
Esp3I CGTCTC 1 cut(s) 2194
FaeI CATG 8 cut(s) 102, 361, 1148, 1757, 1778, 1789, 1865, 1964
FaqI GGGAC 2 cut(s) 1223, 1526
FatI CATG 8 cut(s) 98, 357, 1144, 1753, 1774, 1785, 1861, 1960
FauI CCCGC 2 cut(s) 172, 725
FauNDI CATATG 3 cut(s) 726, 1360, 1945
FbaI TGATCA 1 cut(s) 391
FblI GTMKAC 1 cut(s) 663
FriOI GRGCYC 1 cut(s) 2658
FspBI CTAG 3 cut(s) 464, 2003, 2765
FspI TGCGCA 1 cut(s) 2426
GlaI GCGC 8 cut(s) 124, 297, 349, 1315, 2072, 2351, 2426, 2639
GsaI CCCAGC 1 cut(s) 2718
GsuI CTGGAG 1 cut(s) 1254
HaeII RGCGCY 2 cut(s) 126, 1317
HaeIII GGCC 7 cut(s) 236, 253, 378, 419, 736, 843, 1472
HapII CCGG 9 cut(s) 47, 126, 176, 191, 243, 254, 329, 2278, 2919
HgaI GACGC 1 cut(s) 2099
HhaI GCGC 8 cut(s) 125, 298, 350, 1316, 2073, 2352, 2427, 2640
Hin1I GRCGYC 2 cut(s) 83, 1314
Hin1II CATG 8 cut(s) 102, 361, 1148, 1757, 1778, 1789, 1865, 1964
Hin6I GCGC 8 cut(s) 123, 296, 348, 1314, 2071, 2350, 2425, 2638
HinP1I GCGC 8 cut(s) 123, 296, 348, 1314, 2071, 2350, 2425, 2638
HincII GTYRAC 2 cut(s) 81, 1591
HindII GTYRAC 2 cut(s) 81, 1591
HindIII AAGCTT 1 cut(s) 20
HpaI GTTAAC 1 cut(s) 1591
HpaII CCGG 9 cut(s) 47, 126, 176, 191, 243, 254, 329, 2278, 2919
Hpy99I CGWCG 6 cut(s) 169, 172, 175, 235, 384, 476
HpyAV CCTTC 8 cut(s) 99, 328, 555, 1107, 1546, 1801, 2153, 2320
HpyCH4III ACNGT 9 cut(s) 96, 116, 458, 651, 1296, 1310, 1391, 2346, 2662
HpyCH4IV ACGT 2 cut(s) 83, 1729
HpyF3I CTNAG 9 cut(s) 219, 362, 1179, 1701, 2034, 2400, 2625, 2831, 2887
HpySE526I ACGT 2 cut(s) 83, 1729
Hsp92I GRCGYC 2 cut(s) 83, 1314
Hsp92II CATG 8 cut(s) 102, 361, 1148, 1757, 1778, 1789, 1865, 1964
HspAI GCGC 8 cut(s) 123, 296, 348, 1314, 2071, 2350, 2425, 2638
KasI GGCGCC 1 cut(s) 1313
Kpn2I TCCGGA 1 cut(s) 328
KpnI GGTACC 2 cut(s) 191, 213
KroI GCCGGC 1 cut(s) 175
KroNI GCCGGC 1 cut(s) 177
Ksp22I TGATCA 1 cut(s) 391
KspAI GTTAAC 1 cut(s) 1591
KspI CCGCGG 1 cut(s) 426
LmnI GCTCC 3 cut(s) 33, 1444, 1643
Lsp1109I GCAGC 6 cut(s) 62, 301, 894, 1170, 2011, 2055
LweI GCATC 6 cut(s) 403, 736, 806, 885, 897, 2514
MabI ACCWGGT 1 cut(s) 1911
MaeI CTAG 3 cut(s) 464, 2003, 2765
MaeII ACGT 2 cut(s) 83, 1729
MaeIII GTNAC 2 cut(s) 84, 2689
MfeI CAATTG 1 cut(s) 810
MflI RGATCY 6 cut(s) 342, 578, 991, 1402, 1810, 2736
MhlI GDGCHC 3 cut(s) 924, 1531, 2658
MluI ACGCGT 1 cut(s) 2108
Mly113I GGCGCC 1 cut(s) 1314
MlyI GAGTC 6 cut(s) 98, 230, 515, 1245, 1376, 2801
MmeI TCCRAC 4 cut(s) 249, 664, 945, 2829
MreI CGCCGGCG 1 cut(s) 175
MroI TCCGGA 1 cut(s) 328
MroNI GCCGGC 1 cut(s) 175
MroXI GAANNNNTTC 1 cut(s) 1997
MseI TTAA 5 cut(s) 912, 951, 1407, 1590, 2210
MslI CAYNNNNRTG 4 cut(s) 97, 893, 1692, 2079
MspA1I CMGCKG 2 cut(s) 425, 1025
MspCI CTTAAG 1 cut(s) 911
MspI CCGG 9 cut(s) 47, 126, 176, 191, 243, 254, 329, 2278, 2919
MunI CAATTG 1 cut(s) 810
Mva1269I GAATGC 1 cut(s) 2251
MvaI CCWGG 5 cut(s) 140, 439, 1008, 1913, 2009
MvnI CGCG 6 cut(s) 348, 350, 425, 2110, 2350, 2638
NaeI GCCGGC 1 cut(s) 177
NarI GGCGCC 1 cut(s) 1314
NciI CCSGG 5 cut(s) 47, 127, 244, 2279, 2919
NdeI CATATG 3 cut(s) 726, 1360, 1945
NgoMIV GCCGGC 1 cut(s) 175
NheI GCTAGC 1 cut(s) 2764
NlaIII CATG 8 cut(s) 102, 361, 1148, 1757, 1778, 1789, 1865, 1964
NlaIV GGNNCC 8 cut(s) 131, 189, 211, 829, 1307, 1315, 1812, 2412
NmuCI GTSAC 2 cut(s) 84, 2689
NotI GCGGCCGC 1 cut(s) 417
NsbI TGCGCA 1 cut(s) 2426
NspI RCATGY 1 cut(s) 1865
NspV TTCGAA 2 cut(s) 314, 1284
PagI TCATGA 1 cut(s) 1774
PcsI WCGNNNNNNNCGW 3 cut(s) 164, 2059, 2642
PctI GAATGC 1 cut(s) 2251
PdiI GCCGGC 1 cut(s) 177
PdmI GAANNNNTTC 1 cut(s) 1997
PfeI GAWTC 7 cut(s) 247, 1109, 1190, 1342, 1782, 1838, 2554
PflFI GACNNNGTC 1 cut(s) 433
PflMI CCANNNNNTGG 1 cut(s) 1145
PfoI TCCNGGA 1 cut(s) 1006
Ple19I CGATCG 1 cut(s) 59
PleI GAGTC 6 cut(s) 98, 229, 515, 1244, 1376, 2801
PluTI GGCGCC 1 cut(s) 1317
PpsI GAGTC 6 cut(s) 98, 229, 515, 1244, 1376, 2801
PshBI ATTAAT 1 cut(s) 951
PsiI TTATAA 1 cut(s) 1611
Psp124BI GAGCTC 1 cut(s) 2658
Psp6I CCWGG 5 cut(s) 138, 437, 1006, 1911, 2007
PspFI CCCAGC 1 cut(s) 2714
PspGI CCWGG 5 cut(s) 138, 437, 1006, 1911, 2007
PspN4I GGNNCC 8 cut(s) 131, 189, 211, 829, 1307, 1315, 1812, 2412
PspPI GGNCC 4 cut(s) 734, 828, 2707, 2921
PstI CTGCAG 2 cut(s) 529, 1324
PsuI RGATCY 6 cut(s) 342, 578, 991, 1402, 1810, 2736
PsyI GACNNNGTC 1 cut(s) 433
PvuI CGATCG 1 cut(s) 59
PvuII CAGCTG 1 cut(s) 1025
RsaI GTAC 9 cut(s) 189, 211, 531, 696, 816, 1124, 1298, 1958, 2052
RsaNI GTAC 9 cut(s) 188, 210, 530, 695, 815, 1123, 1297, 1957, 2051
RseI CAYNNNNRTG 4 cut(s) 97, 893, 1692, 2079
SacI GAGCTC 1 cut(s) 2658
SacII CCGCGG 1 cut(s) 426
SaqAI TTAA 5 cut(s) 912, 951, 1407, 1590, 2210
Sau96I GGNCC 4 cut(s) 734, 828, 2707, 2921
SchI GAGTC 6 cut(s) 98, 230, 515, 1245, 1376, 2801
SduI GDGCHC 3 cut(s) 924, 1531, 2658
SexAI ACCWGGT 1 cut(s) 1911
SfaNI GCATC 6 cut(s) 403, 736, 806, 885, 897, 2514
SfcI CTRYAG 3 cut(s) 525, 1320, 1722
SfoI GGCGCC 1 cut(s) 1315
Sfr303I CCGCGG 1 cut(s) 426
SfuI TTCGAA 2 cut(s) 314, 1284
SgrAI CRCCGGYG 1 cut(s) 175
SgrBI CCGCGG 1 cut(s) 426
SinI GGWCC 3 cut(s) 828, 2707, 2921
SmiMI CAYNNNNRTG 4 cut(s) 97, 893, 1692, 2079
SmlI CTYRAG 2 cut(s) 911, 2669
SmoI CTYRAG 2 cut(s) 911, 2669
SspDI GGCGCC 1 cut(s) 1313
SspMI CTAG 3 cut(s) 464, 2003, 2765
SstI GAGCTC 1 cut(s) 2658
StyI CCWWGG 4 cut(s) 571, 624, 2147, 2504
TaaI ACNGT 9 cut(s) 96, 116, 458, 651, 1296, 1310, 1391, 2346, 2662
TaiI ACGT 2 cut(s) 86, 1732
TaqI TCGA 9 cut(s) 55, 59, 314, 607, 936, 1076, 1284, 1759, 2255
TatI WGTACW 3 cut(s) 529, 814, 1122
TauI GCSGC 8 cut(s) 353, 375, 378, 419, 422, 425, 1215, 2562
TfiI GAWTC 7 cut(s) 247, 1109, 1190, 1342, 1782, 1838, 2554
Tru1I TTAA 5 cut(s) 912, 951, 1407, 1590, 2210
Tru9I TTAA 5 cut(s) 912, 951, 1407, 1590, 2210
TscAI CASTG 4 cut(s) 99, 313, 463, 656
TseFI GTSAC 2 cut(s) 84, 2689
TseI GCWGC 6 cut(s) 50, 289, 907, 1158, 2024, 2068
Tsp45I GTSAC 2 cut(s) 84, 2689
TspGWI ACGGA 5 cut(s) 213, 533, 1605, 1890, 2068
TspRI CASTG 4 cut(s) 99, 313, 463, 656
Tth111I GACNNNGTC 1 cut(s) 433
Van91I CCANNNNNTGG 1 cut(s) 1145
Vha464I CTTAAG 1 cut(s) 911
VneI GTGCAC 2 cut(s) 920, 1527
VpaK11BI GGWCC 3 cut(s) 828, 2707, 2921
VspI ATTAAT 1 cut(s) 951
XagI CCTNNNNNAGG 2 cut(s) 436, 2006
XapI RAATTY 3 cut(s) 316, 687, 1896
XceI RCATGY 1 cut(s) 1865
XcmI CCANNNNNNNNNTGG 1 cut(s) 364
XmiI GTMKAC 1 cut(s) 663
XmnI GAANNNNTTC 1 cut(s) 1997
XspI CTAG 3 cut(s) 464, 2003, 2765
ZraI GACGTC 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.