Rmu_co8196312.1_g000001

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8196312.1
OG0004456
Physical Location & Seq
Forward (+)
177 .. 671
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8196312.1_g000001.1.cds

Sequence Viewer

Length: 495 bp
atgaagcacattttcaagaagcttcacatagggagcaaccacgacccggcggctcgatcgaacgagccaccaacagcgttgacgtcaccttcaccgtcatgcgactccgatcaccgtcagagcgccgggaaccatcccccggcgagtgctttttcttcgtcttcttcgtcgtcgtcgccggcggggacggtaccggcgaacggaggtgtaggtgccagttcggagtcgtctgcgacggcgacgaccgggagtcggtcggactatatgttgtcggaggaggagtttcaggtgcagcttgcgctggcgatcagtgcttcgaattcggatgatccggagaaggatcagatccgtgcggcgacgatgctgagcttgggcggcggccgtcgtggtggtgatcagacgggggatgaggtggatgcggcggccgcggagaccttgtccaggcactattgggtgagtttgcttgaaattttgttaggttttagagttcagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000165 GO:0000186 GO:0001101 GO:0001932 GO:0001934 GO:0002229 GO:0002239 GO:0002831 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005769 GO:0005783 GO:0005794 GO:0005798 GO:0005802 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009787 GO:0009788 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0010648 GO:0012505 GO:0012506 GO:0012510 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0030665 GO:0031090 GO:0031323 GO:0031325 GO:0031347 GO:0031399 GO:0031401 GO:0031410 GO:0031982 GO:0031984 GO:0032101 GO:0032147 GO:0032268 GO:0032270 GO:0033674 GO:0035556 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0043900 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0080134 GO:0097708 GO:0098542 GO:0098588 GO:0098791 GO:0098805 GO:0140096 GO:1900150 GO:1900424 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902531 GO:1902533 GO:1905957 GO:1905958 GO:2000031 GO:2001023 GO:2001038
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EDR1 Pkinase_Tyr

Protein Analysis

164

Amino Acids

17.0

Weight (kDa)

5.23

Isoelectric Point (pI)

76.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 86
Acc65I GGTACC 1 cut(s) 190
AccB1I GGYRCC 2 cut(s) 190, 212
AccII CGCG 1 cut(s) 428
AccIII TCCGGA 1 cut(s) 331
AciI CCGC 9 cut(s) 50, 182, 353, 375, 378, 419, 422, 426, 428
AclWI GGATC 3 cut(s) 323, 340, 348
AcoI YGGCCR 2 cut(s) 379, 423
AcsI RAATTY 2 cut(s) 319, 468
AcyI GRCGYC 1 cut(s) 83
AfaI GTAC 1 cut(s) 192
AfiI CCNNNNNNNGG 5 cut(s) 46, 139, 200, 252, 441
AgsI TTSAA 2 cut(s) 16, 467
AhdI GACNNNNNGTC 1 cut(s) 249
AjnI CCWGG 1 cut(s) 440
AluBI AGCT 3 cut(s) 22, 295, 369
AluI AGCT 3 cut(s) 22, 295, 369
Alw26I GTCTC 1 cut(s) 425
AlwI GGATC 3 cut(s) 323, 340, 348
Aor13HI TCCGGA 1 cut(s) 331
AoxI GGCC 2 cut(s) 379, 423
ApeKI GCWGC 1 cut(s) 292
ApoI RAATTY 2 cut(s) 319, 468
Asp718I GGTACC 1 cut(s) 190
AspLEI GCGC 2 cut(s) 125, 301
AsuC2I CCSGG 4 cut(s) 47, 127, 140, 247
AsuHPI GGTGA 5 cut(s) 78, 84, 104, 404, 466
AsuII TTCGAA 1 cut(s) 317
BanI GGYRCC 2 cut(s) 190, 212
BbsI GAAGAC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 304
BccI CCATC 1 cut(s) 141
BceAI ACGGC 2 cut(s) 252, 366
BciT130I CCWGG 1 cut(s) 442
BclI TGATCA 1 cut(s) 394
BcnI CCSGG 4 cut(s) 47, 127, 140, 247
BcoDI GTCTC 1 cut(s) 425
BfoI RGCGCY 1 cut(s) 126
BisI GCNGC 8 cut(s) 51, 293, 354, 376, 379, 420, 423, 426
BlpI GCTNAGC 1 cut(s) 365
BlsI GCNGC 8 cut(s) 52, 294, 355, 377, 380, 421, 424, 427
Bme1390I CCNGG 5 cut(s) 47, 127, 140, 247, 442
BmeRI GACNNNNNGTC 1 cut(s) 249
BmiI GGNNCC 3 cut(s) 131, 192, 214
BmrFI CCNGG 5 cut(s) 47, 127, 140, 247, 442
BmsI GCATC 2 cut(s) 351, 406
BpiI GAAGAC 1 cut(s) 153
Bpu1102I GCTNAGC 1 cut(s) 365
Bpu14I TTCGAA 1 cut(s) 317
BpuMI CCSGG 4 cut(s) 47, 127, 140, 247
BsaHI GRCGYC 1 cut(s) 83
BsaI GGTCTC 1 cut(s) 425
BsaJI CCNNGG 2 cut(s) 138, 426
BsaWI WCCGGW 1 cut(s) 331
BsaXI ACNNNNNCTCC 4 cut(s) 266, 296, 422, 452
Bsc4I CCNNNNNNNGG 5 cut(s) 46, 139, 200, 252, 441
Bse118I RCCGGY 2 cut(s) 178, 193
Bse1I ACTGG 1 cut(s) 216
BseAI TCCGGA 1 cut(s) 331
BseBI CCWGG 1 cut(s) 442
BseDI CCNNGG 2 cut(s) 138, 426
BseGI GGATG 4 cut(s) 133, 331, 412, 421
BseLI CCNNNNNNNGG 5 cut(s) 46, 139, 200, 252, 441
BseMII CTCAG 1 cut(s) 356
BseNI ACTGG 1 cut(s) 216
BseRI GAGGAG 2 cut(s) 290, 293
BseX3I CGGCCG 2 cut(s) 379, 423
BseXI GCAGC 1 cut(s) 304
BsgI GTGCAG 1 cut(s) 311
Bsh1236I CGCG 1 cut(s) 428
Bsh1285I CGRYCG 5 cut(s) 59, 246, 257, 382, 426
BshFI GGCC 2 cut(s) 381, 425
BshNI GGYRCC 2 cut(s) 190, 212
BsiEI CGRYCG 5 cut(s) 59, 246, 257, 382, 426
BsiSI CCGG 7 cut(s) 47, 126, 140, 179, 194, 246, 332
BslFI GGGAC 1 cut(s) 199
BslI CCNNNNNNNGG 5 cut(s) 46, 139, 200, 252, 441
BsmAI GTCTC 1 cut(s) 425
BsmFI GGGAC 1 cut(s) 199
BsnI GGCC 2 cut(s) 381, 425
Bso31I GGTCTC 1 cut(s) 425
Bsp119I TTCGAA 1 cut(s) 317
Bsp13I TCCGGA 1 cut(s) 331
Bsp143I GATC 7 cut(s) 56, 109, 306, 328, 340, 345, 394
Bsp1720I GCTNAGC 1 cut(s) 365
BspACI CCGC 9 cut(s) 50, 182, 353, 375, 378, 419, 422, 426, 428
BspANI GGCC 2 cut(s) 381, 425
BspCNI CTCAG 1 cut(s) 357
BspEI TCCGGA 1 cut(s) 331
BspFNI CGCG 1 cut(s) 428
BspLI GGNNCC 3 cut(s) 131, 192, 214
BspPI GGATC 3 cut(s) 323, 340, 348
BspT104I TTCGAA 1 cut(s) 317
BspT107I GGYRCC 2 cut(s) 190, 212
BspTNI GGTCTC 1 cut(s) 425
BsrFI RCCGGY 2 cut(s) 178, 193
BsrI ACTGG 1 cut(s) 216
BssAI RCCGGY 2 cut(s) 178, 193
BssECI CCNNGG 2 cut(s) 138, 426
BssMI GATC 7 cut(s) 56, 109, 306, 328, 340, 345, 394
BssNI GRCGYC 1 cut(s) 83
Bst2UI CCWGG 1 cut(s) 442
Bst4CI ACNGT 3 cut(s) 96, 116, 190
BstACI GRCGYC 1 cut(s) 83
BstBI TTCGAA 1 cut(s) 317
BstC8I GCNNGC 3 cut(s) 180, 297, 303
BstDEI CTNAG 1 cut(s) 365
BstDSI CCRYGG 1 cut(s) 426
BstENI CCTNNNNNAGG 1 cut(s) 439
BstF5I GGATG 4 cut(s) 133, 331, 412, 421
BstFNI CGCG 1 cut(s) 428
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 2 cut(s) 125, 301
BstKTI GATC 7 cut(s) 59, 112, 309, 331, 343, 348, 397
BstMAI GTCTC 1 cut(s) 425
BstMBI GATC 7 cut(s) 56, 109, 306, 328, 340, 345, 394
BstMCI CGRYCG 5 cut(s) 59, 246, 257, 382, 426
BstMWI GCNNNNNNNGC 4 cut(s) 298, 311, 375, 425
BstNI CCWGG 1 cut(s) 442
BstSCI CCNGG 5 cut(s) 45, 125, 138, 245, 440
BstUI CGCG 1 cut(s) 428
BstV1I GCAGC 1 cut(s) 304
BstV2I GAAGAC 1 cut(s) 153
BstX2I RGATCY 1 cut(s) 345
BstYI RGATCY 1 cut(s) 345
BstZI CGGCCG 2 cut(s) 379, 423
BsuRI GGCC 2 cut(s) 381, 425
BtgI CCRYGG 1 cut(s) 426
BtsCI GGATG 4 cut(s) 133, 331, 412, 421
BtsIMutI CAGTG 1 cut(s) 316
Cac8I GCNNGC 3 cut(s) 180, 297, 303
CciNI GCGGCCGC 1 cut(s) 423
CfoI GCGC 2 cut(s) 125, 301
Cfr10I RCCGGY 2 cut(s) 178, 193
Cfr42I CCGCGG 1 cut(s) 429
Csp6I GTAC 1 cut(s) 191
CviAII CATG 1 cut(s) 99
CviJI RGCY 7 cut(s) 22, 53, 67, 295, 369, 381, 425
CviKI_1 RGCY 7 cut(s) 22, 53, 67, 295, 369, 381, 425
CviQI GTAC 1 cut(s) 191
DdeI CTNAG 1 cut(s) 365
DpnI GATC 7 cut(s) 58, 111, 308, 330, 342, 347, 396
DpnII GATC 7 cut(s) 56, 109, 306, 328, 340, 345, 394
DriI GACNNNNNGTC 1 cut(s) 249
EaeI YGGCCR 2 cut(s) 379, 423
EagI CGGCCG 2 cut(s) 379, 423
Eam1105I GACNNNNNGTC 1 cut(s) 249
EclXI CGGCCG 2 cut(s) 379, 423
Eco31I GGTCTC 1 cut(s) 425
Eco52I CGGCCG 2 cut(s) 379, 423
EcoNI CCTNNNNNAGG 1 cut(s) 439
EcoRI GAATTC 1 cut(s) 319
EcoRII CCWGG 1 cut(s) 440
FaeI CATG 1 cut(s) 102
FaiI YATR 4 cut(s) 29, 100, 264, 266
FaqI GGGAC 1 cut(s) 199
FatI CATG 1 cut(s) 98
FauI CCCGC 1 cut(s) 175
FbaI TGATCA 1 cut(s) 394
Fnu4HI GCNGC 8 cut(s) 51, 293, 354, 376, 379, 420, 423, 426
FokI GGATG 4 cut(s) 120, 338, 419, 428
Fsp4HI GCNGC 8 cut(s) 51, 293, 354, 376, 379, 420, 423, 426
GlaI GCGC 2 cut(s) 124, 300
GluI GCNGC 8 cut(s) 51, 293, 354, 376, 379, 420, 423, 426
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 2 cut(s) 381, 425
HapII CCGG 7 cut(s) 47, 126, 140, 179, 194, 246, 332
HhaI GCGC 2 cut(s) 125, 301
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 1 cut(s) 102
Hin6I GCGC 2 cut(s) 123, 299
HinP1I GCGC 2 cut(s) 123, 299
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 3 cut(s) 104, 224, 250
HpaII CCGG 7 cut(s) 47, 126, 140, 179, 194, 246, 332
HphI GGTGA 5 cut(s) 78, 84, 104, 404, 466
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 8 cut(s) 109, 120, 223, 259, 274, 325, 345, 399
Hpy188III TCNNGA 2 cut(s) 16, 332
Hpy8I GTNNAC 1 cut(s) 81
Hpy99I CGWCG 7 cut(s) 172, 175, 178, 238, 244, 361, 387
HpyAV CCTTC 2 cut(s) 99, 331
HpyCH4III ACNGT 3 cut(s) 96, 116, 190
HpyCH4IV ACGT 1 cut(s) 83
HpyCH4V TGCA 1 cut(s) 292
HpyF10VI GCNNNNNNNGC 4 cut(s) 298, 311, 375, 425
HpyF3I CTNAG 1 cut(s) 365
HpySE526I ACGT 1 cut(s) 83
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 1 cut(s) 102
HspAI GCGC 2 cut(s) 123, 299
Kpn2I TCCGGA 1 cut(s) 331
KpnI GGTACC 1 cut(s) 194
KroI GCCGGC 1 cut(s) 178
KroNI GCCGGC 1 cut(s) 180
Ksp22I TGATCA 1 cut(s) 394
KspI CCGCGG 1 cut(s) 429
Kzo9I GATC 7 cut(s) 56, 109, 306, 328, 340, 345, 394
LmnI GCTCC 1 cut(s) 33
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 2 cut(s) 351, 406
MaeII ACGT 1 cut(s) 83
MaeIII GTNAC 1 cut(s) 84
MalI GATC 7 cut(s) 58, 111, 308, 330, 342, 347, 396
MboI GATC 7 cut(s) 56, 109, 306, 328, 340, 345, 394
MboII GAAGA 3 cut(s) 147, 153, 156
MflI RGATCY 1 cut(s) 345
MluCI AATT 2 cut(s) 319, 468
MlyI GAGTC 3 cut(s) 98, 233, 259
MmeI TCCRAC 2 cut(s) 237, 252
MnlI CCTC 4 cut(s) 197, 268, 271, 403
MreI CGCCGGCG 1 cut(s) 178
MroI TCCGGA 1 cut(s) 331
MroNI GCCGGC 1 cut(s) 178
MslI CAYNNNNRTG 1 cut(s) 97
MspA1I CMGCKG 1 cut(s) 428
MspI CCGG 7 cut(s) 47, 126, 140, 179, 194, 246, 332
MspR9I CCNGG 5 cut(s) 47, 127, 140, 247, 442
MvaI CCWGG 1 cut(s) 442
MvnI CGCG 1 cut(s) 428
MwoI GCNNNNNNNGC 4 cut(s) 298, 311, 375, 425
NaeI GCCGGC 1 cut(s) 180
NciI CCSGG 4 cut(s) 47, 127, 140, 247
NdeII GATC 7 cut(s) 56, 109, 306, 328, 340, 345, 394
NgoMIV GCCGGC 1 cut(s) 178
NlaIII CATG 1 cut(s) 102
NlaIV GGNNCC 3 cut(s) 131, 192, 214
NmuCI GTSAC 1 cut(s) 84
NotI GCGGCCGC 1 cut(s) 423
NspV TTCGAA 1 cut(s) 317
PcsI WCGNNNNNNNCGW 2 cut(s) 164, 194
PdiI GCCGGC 1 cut(s) 180
PflFI GACNNNGTC 1 cut(s) 436
PkrI GCNGC 8 cut(s) 52, 294, 355, 377, 380, 421, 424, 427
Ple19I CGATCG 1 cut(s) 59
PleI GAGTC 3 cut(s) 98, 232, 258
PpsI GAGTC 3 cut(s) 98, 232, 258
Psp6I CCWGG 1 cut(s) 440
PspGI CCWGG 1 cut(s) 440
PspN4I GGNNCC 3 cut(s) 131, 192, 214
PsuI RGATCY 1 cut(s) 345
PsyI GACNNNGTC 1 cut(s) 436
PvuI CGATCG 1 cut(s) 59
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
RseI CAYNNNNRTG 1 cut(s) 97
SacII CCGCGG 1 cut(s) 429
SatI GCNGC 8 cut(s) 51, 293, 354, 376, 379, 420, 423, 426
Sau3AI GATC 7 cut(s) 56, 109, 306, 328, 340, 345, 394
SchI GAGTC 3 cut(s) 98, 233, 259
ScrFI CCNGG 5 cut(s) 47, 127, 140, 247, 442
SfaNI GCATC 2 cut(s) 351, 406
Sfr303I CCGCGG 1 cut(s) 429
SfuI TTCGAA 1 cut(s) 317
SgrAI CRCCGGYG 1 cut(s) 178
SgrBI CCGCGG 1 cut(s) 429
SmiMI CAYNNNNRTG 1 cut(s) 97
Sse9I AATT 2 cut(s) 319, 468
SsiI CCGC 9 cut(s) 50, 182, 353, 375, 378, 419, 422, 426, 428
StyD4I CCNGG 5 cut(s) 45, 125, 138, 245, 440
TaaI ACNGT 3 cut(s) 96, 116, 190
TaiI ACGT 1 cut(s) 86
TaqI TCGA 3 cut(s) 55, 59, 317
TaqII GACCGA 1 cut(s) 243
TasI AATT 2 cut(s) 319, 468
TauI GCSGC 7 cut(s) 53, 356, 378, 381, 422, 425, 428
TscAI CASTG 1 cut(s) 316
TseFI GTSAC 1 cut(s) 84
TseI GCWGC 1 cut(s) 292
Tsp45I GTSAC 1 cut(s) 84
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 216, 338
TspRI CASTG 1 cut(s) 316
Tth111I GACNNNGTC 1 cut(s) 436
XagI CCTNNNNNAGG 1 cut(s) 439
XapI RAATTY 2 cut(s) 319, 468
ZraI GACGTC 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.