Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8510969.1

Orthogroup ID

OG0004456

Physical Location & Seq

Genomic Coordinates Reverse (-)

1185 .. 3185

Gene Structure 2001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8510969.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atgaaaagactcagacatcccaatgttgttctcttcatgggagcaataactcgtgctccaaatctatccattgttacggaatttcttccaagaggtagtttatataggttgttacaccggcctaacaatcaattagatgagcgaaggcgcttgaggatggctcttgatgctgctcggggaatgaattacttgcataactgcactccagtaatagtacaccgtgatttaaagtctccaaaccttctcgttgataagaattgggtcgtaaaggtctgtgattttggattatcaagaatgaagaacagcacatttctctcctcgaggtccactgcagggacggctgaatggatggctccagaagtgctaagaaacgaaccttcagatgaaaagtgcgatgtttatagctatggggtcatattgtgggagctctctacaatgcaacagccatggggaggaatgaacccaatgcaagtcgttggtgcagttggatttcaacatcgccgtcttgatattccaaatgatattgatcctgcaattgcagatcttattgaaaaatgctggcagacagatccaaaattgagaccctcatttgctgagatcatggctatcctgaagccgttgcagaagcctgtaagtagttctgcagtgcctagatctactgcacaaaggccatcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009651 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0035556 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EDR1 Pkinase_Tyr

Protein Analysis

225

Amino Acids

25.55

Weight (kDa)

9.69

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08720 AT1G08720
fragaria_vesca	FvH4_4g15830 FvH4_6g03880 FvH4_6g03880 FvH4_6g03880 FvH4_6g03880 FvH4_6g03880 FvH4_6g03880 FvH4_6g03880
malus_domestica	MD04G1217700.v1.1 MD12G1234900.v1.1
prunus_persica	Prupe.6G337600_v2.0.a1 Prupe.6G337600_v2.0.a1 Prupe.6G337600_v2.0.a1
pyrus_communis	pycom04g19360 pycom12g21670
rosa_chinensis	RchiOBHm_Chr3g0452451
rosa_laevigata	RLG00000025601
rosa_multiflora	Rmu_co8196312.1_g000001 Rmu_co8510969.1_g000002 Rmu_sc0011680.1_g000007 Rmu_sc0017115.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429460
rosa_rugosa	Rorug02G0640900 Rorug02G0641000 Rorug02G0641000
rosa_samantha	Rh3AG042700 Rh3BG044400 Rh3CG043000 Rh3DG043800
rosa_wichuraiana	Rw3G003300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	319
AclWI	GGATC	2 cut(s)	521, 563
AcsI	RAATTY	1 cut(s)	80
AcuI	CTGAAG	2 cut(s)	363, 632
AfaI	GTAC	1 cut(s)	216
AfiI	CCNNNNNNNGG	2 cut(s)	333, 452
AgsI	TTSAA	2 cut(s)	494, 551
AluBI	AGCT	2 cut(s)	405, 427
AluI	AGCT	2 cut(s)	405, 427
Alw21I	GWGCWC	2 cut(s)	58, 429
Alw26I	GTCTC	2 cut(s)	237, 574
AlwI	GGATC	2 cut(s)	521, 563
Ama87I	CYCGRG	2 cut(s)	174, 319
AoxI	GGCC	2 cut(s)	119, 668
ApeKI	GCWGC	1 cut(s)	170
ApoI	RAATTY	1 cut(s)	80
Asp700I	GAANNNNTTC	1 cut(s)	84
AspLEI	GCGC	1 cut(s)	150
AspS9I	GGNCC	1 cut(s)	324
AvaI	CYCGRG	2 cut(s)	174, 319
AvaII	GGWCC	1 cut(s)	324
BanII	GRGCYC	1 cut(s)	429
BauI	CACGAG	1 cut(s)	51
Bbv12I	GWGCWC	2 cut(s)	58, 429
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	2 cut(s)	151, 343
BceAI	ACGGC	3 cut(s)	354, 486, 601
BcoDI	GTCTC	2 cut(s)	237, 574
BfaI	CTAG	1 cut(s)	651
BfmI	CTRYAG	2 cut(s)	330, 642
BfoI	RGCGCY	1 cut(s)	151
BglII	AGATCT	2 cut(s)	541, 653
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
Bme18I	GGWCC	1 cut(s)	324
BmeT110I	CYCGRG	2 cut(s)	174, 319
BmgT120I	GGNCC	1 cut(s)	324
BmiI	GGNNCC	1 cut(s)	354
BmsI	GCATC	1 cut(s)	157
BplI	GAGNNNNNCTC	2 cut(s)	145, 177
BpmI	CTGGAG	2 cut(s)	189, 339
BpuEI	CTTGAG	1 cut(s)	172
BsaBI	GATNNNNATC	1 cut(s)	525
BsaI	GGTCTC	1 cut(s)	574
BsaJI	CCNNGG	1 cut(s)	446
BsaXI	ACNNNNNCTCC	2 cut(s)	40, 70
Bsc4I	CCNNNNNNNGG	2 cut(s)	333, 452
Bse118I	RCCGGY	1 cut(s)	117
Bse1I	ACTGG	1 cut(s)	206
Bse8I	GATNNNNATC	1 cut(s)	525
BseDI	CCNNGG	1 cut(s)	446
BseGI	GGATG	4 cut(s)	16, 162, 354, 671
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	2 cut(s)	333, 452
BseMII	CTCAG	2 cut(s)	25, 585
BseNI	ACTGG	1 cut(s)	206
BseRI	GAGGAG	1 cut(s)	307
BseXI	GCAGC	1 cut(s)	157
BsgI	GTGCAG	3 cut(s)	184, 501, 645
BshFI	GGCC	2 cut(s)	121, 670
BsiHKAI	GWGCWC	2 cut(s)	58, 429
BsiHKCI	CYCGRG	2 cut(s)	174, 319
BsiSI	CCGG	1 cut(s)	118
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	2 cut(s)	333, 452
BsmAI	GTCTC	2 cut(s)	237, 574
BsmFI	GGGAC	1 cut(s)	349
BsnI	GGCC	2 cut(s)	121, 670
Bso31I	GGTCTC	1 cut(s)	574
BsoBI	CYCGRG	2 cut(s)	174, 319
Bsp1286I	GDGCHC	2 cut(s)	58, 429
Bsp143I	GATC	5 cut(s)	526, 541, 568, 597, 653
Bsp19I	CCATGG	1 cut(s)	446
BspANI	GGCC	2 cut(s)	121, 670
BspCNI	CTCAG	2 cut(s)	24, 586
BspLI	GGNNCC	1 cut(s)	354
BspMAI	CTGCAG	2 cut(s)	334, 646
BspPI	GGATC	2 cut(s)	521, 563
BspTNI	GGTCTC	1 cut(s)	574
BsrFI	RCCGGY	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	206
BssAI	RCCGGY	1 cut(s)	117
BssECI	CCNNGG	1 cut(s)	446
BssMI	GATC	5 cut(s)	526, 541, 568, 597, 653
BssSI	CACGAG	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	446
Bst2BI	CACGAG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	560
BstDEI	CTNAG	3 cut(s)	11, 365, 594
BstDSI	CCRYGG	1 cut(s)	446
BstF5I	GGATG	4 cut(s)	16, 162, 354, 671
BstH2I	RGCGCY	1 cut(s)	151
BstHHI	GCGC	1 cut(s)	150
BstKTI	GATC	5 cut(s)	529, 544, 571, 600, 656
BstMAI	GTCTC	2 cut(s)	237, 574
BstMBI	GATC	5 cut(s)	526, 541, 568, 597, 653
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 338
BstSFI	CTRYAG	2 cut(s)	330, 642
BstV1I	GCAGC	1 cut(s)	157
BstX2I	RGATCY	3 cut(s)	541, 568, 653
BstYI	RGATCY	3 cut(s)	541, 568, 653
BsuRI	GGCC	2 cut(s)	121, 670
BtgI	CCRYGG	1 cut(s)	446
BtgZI	GCGATG	2 cut(s)	408, 482
BtsCI	GGATG	4 cut(s)	16, 162, 354, 671
BtsI	GCAGTG	2 cut(s)	327, 651
BtsIMutI	CAGTG	2 cut(s)	327, 651
Cac8I	GCNNGC	1 cut(s)	560
CfoI	GCGC	1 cut(s)	150
Cfr10I	RCCGGY	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	324
Csp6I	GTAC	1 cut(s)	215
CviAII	CATG	3 cut(s)	37, 447, 601
CviQI	GTAC	1 cut(s)	215
DdeI	CTNAG	3 cut(s)	11, 365, 594
DpnI	GATC	5 cut(s)	528, 543, 570, 599, 655
DpnII	GATC	5 cut(s)	526, 541, 568, 597, 653
DraI	TTTAAA	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Ecl136II	GAGCTC	1 cut(s)	427
Eco130I	CCWWGG	1 cut(s)	446
Eco24I	GRGCYC	1 cut(s)	429
Eco31I	GGTCTC	1 cut(s)	574
Eco47I	GGWCC	1 cut(s)	324
Eco53kI	GAGCTC	1 cut(s)	427
Eco57I	CTGAAG	2 cut(s)	363, 632
Eco88I	CYCGRG	2 cut(s)	174, 319
EcoICRI	GAGCTC	1 cut(s)	427
EcoT14I	CCWWGG	1 cut(s)	446
EcoT38I	GRGCYC	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	446
FaeI	CATG	3 cut(s)	40, 450, 604
FaiI	YATR	9 cut(s)	38, 103, 105, 195, 402, 408, 416, 448, 602
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	3 cut(s)	36, 446, 600
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	4 cut(s)	3, 169, 361, 658
FriOI	GRGCYC	1 cut(s)	429
Fsp4HI	GCNGC	1 cut(s)	171
FspBI	CTAG	1 cut(s)	651
GlaI	GCGC	1 cut(s)	149
GluI	GCNGC	1 cut(s)	171
GsuI	CTGGAG	2 cut(s)	189, 339
HaeII	RGCGCY	1 cut(s)	151
HaeIII	GGCC	2 cut(s)	121, 670
HapII	CCGG	1 cut(s)	118
HhaI	GCGC	1 cut(s)	150
Hin1II	CATG	3 cut(s)	40, 450, 604
Hin6I	GCGC	1 cut(s)	148
HinP1I	GCGC	1 cut(s)	148
HinfI	GANTC	1 cut(s)	9
HpaII	CCGG	1 cut(s)	118
Hpy166II	GTNNAC	2 cut(s)	217, 327
Hpy188I	TCNGA	2 cut(s)	14, 382
Hpy188III	TCNNGA	6 cut(s)	164, 291, 356, 506, 610, 675
Hpy8I	GTNNAC	2 cut(s)	217, 327
HpyAV	CCTTC	3 cut(s)	138, 251, 387
HpyCH4III	ACNGT	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 338
HpyF3I	CTNAG	3 cut(s)	11, 365, 594
Hsp92II	CATG	3 cut(s)	40, 450, 604
HspAI	GCGC	1 cut(s)	148
Kzo9I	GATC	5 cut(s)	526, 541, 568, 597, 653
LmnI	GCTCC	4 cut(s)	41, 61, 358, 424
LpnPI	CCDG	8 cut(s)	131, 219, 318, 369, 543, 544, 623, 642
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	157
MaeI	CTAG	1 cut(s)	651
MaeIII	GTNAC	2 cut(s)	73, 111
MalI	GATC	5 cut(s)	528, 543, 570, 599, 655
MboI	GATC	5 cut(s)	526, 541, 568, 597, 653
MboII	GAAGA	3 cut(s)	25, 77, 310
MfeI	CAATTG	1 cut(s)	534
MflI	RGATCY	3 cut(s)	541, 568, 653
MhlI	GDGCHC	2 cut(s)	58, 429
MluCI	AATT	6 cut(s)	80, 131, 184, 256, 534, 575
MlyI	GAGTC	1 cut(s)	3
MmeI	TCCRAC	1 cut(s)	466
MnlI	CCTC	6 cut(s)	86, 147, 315, 328, 446, 595
MroXI	GAANNNNTTC	1 cut(s)	84
MseI	TTAA	1 cut(s)	227
MslI	CAYNNNNRTG	1 cut(s)	21
MspI	CCGG	1 cut(s)	118
MunI	CAATTG	1 cut(s)	534
MwoI	GCNNNNNNNGC	2 cut(s)	167, 338
NcoI	CCATGG	1 cut(s)	446
NdeII	GATC	5 cut(s)	526, 541, 568, 597, 653
NlaIII	CATG	3 cut(s)	40, 450, 604
NlaIV	GGNNCC	1 cut(s)	354
PaeR7I	CTCGAG	1 cut(s)	319
PdmI	GAANNNNTTC	1 cut(s)	84
PkrI	GCNGC	1 cut(s)	172
PleI	GAGTC	1 cut(s)	3
PpsI	GAGTC	1 cut(s)	3
Psp124BI	GAGCTC	1 cut(s)	429
PspN4I	GGNNCC	1 cut(s)	354
PspPI	GGNCC	1 cut(s)	324
PspXI	VCTCGAGB	1 cut(s)	319
PstI	CTGCAG	2 cut(s)	334, 646
PsuI	RGATCY	3 cut(s)	541, 568, 653
RsaI	GTAC	1 cut(s)	216
RsaNI	GTAC	1 cut(s)	215
RseI	CAYNNNNRTG	1 cut(s)	21
SacI	GAGCTC	1 cut(s)	429
SaqAI	TTAA	1 cut(s)	227
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	5 cut(s)	526, 541, 568, 597, 653
Sau96I	GGNCC	1 cut(s)	324
SchI	GAGTC	1 cut(s)	3
SduI	GDGCHC	2 cut(s)	58, 429
SetI	ASST	8 cut(s)	97, 110, 243, 273, 326, 379, 407, 429
SfaNI	GCATC	1 cut(s)	157
SfcI	CTRYAG	2 cut(s)	330, 642
Sfr274I	CTCGAG	1 cut(s)	319
SinI	GGWCC	1 cut(s)	324
SlaI	CTCGAG	1 cut(s)	319
SmiMI	CAYNNNNRTG	1 cut(s)	21
SmlI	CTYRAG	2 cut(s)	151, 319
SmoI	CTYRAG	2 cut(s)	151, 319
Sse9I	AATT	6 cut(s)	80, 131, 184, 256, 534, 575
SspMI	CTAG	1 cut(s)	651
SstI	GAGCTC	1 cut(s)	429
StyI	CCWWGG	1 cut(s)	446
TaaI	ACNGT	1 cut(s)	221
TaqI	TCGA	1 cut(s)	320
TasI	AATT	6 cut(s)	80, 131, 184, 256, 534, 575
TatI	WGTACW	1 cut(s)	214
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TscAI	CASTG	2 cut(s)	334, 651
TseI	GCWGC	1 cut(s)	170
TspDTI	ATGAA	6 cut(s)	17, 25, 197, 311, 399, 473
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	2 cut(s)	334, 651
VpaK11BI	GGWCC	1 cut(s)	324
XapI	RAATTY	1 cut(s)	80
XhoI	CTCGAG	1 cut(s)	319
XmnI	GAANNNNTTC	1 cut(s)	84
XspI	CTAG	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.