Rorug02G0641000

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004456
Physical Location & Seq
Reverse (-)
75322529 .. 75325289
2761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0641000.1

Sequence Viewer

Length: 678 bp
ATGGGTGTGGCGGCGAAAATAGCACCGTCGATGCTGTCGTCGGACTTTGCCAATTTGGCGTCGGAGGCCCATCGAATGCTCAAAGACGGCGCCGATTGGCTCCACATGGACATCATGGATGGGCATTTTGTTCCGAATCTGACACTTGGTGCTCCGGTTATTCAGAGTTTGAGAAAGCATACAGAGGCATATCTGGATTGTCACCTTATGGTCACAAATCCTCTTGATTATGTTGAGCCATTGGCAAAAGCTGGTGCTTCGGGTTTCACATTTCATGTTGAGGTATCCAAAGATAATTGGCAAGAGCTTGTTCAAAGGATCAAGTCCAAGGGCATGACACCAGGTGTGGCACTCAAGCCTGGAACTCCGATTGAAGAAGTTTTTCCTCTGGTGGAAGGTGAAATTCATGTGGACATGGTCCTCGTTATGACTGTGGAACCTGGATTTGGTGGACAGAAGTTCATGCCAGAAACAATGGATAAGGTTCGCACACTGAGAAAGAAGTATCCTTCACTAGATATAGAGGTAGATGGTGGCTTAGGGCCTTCAACCATTGACATTGCAGCTTCAGCCGGAGCAAACTGCATAGTTGCTGGAAGTTCAGTGTTTGGTGCCCCCGAACCTGCCAAAGTAATATCCGTCTTGAGAACTAGTGTTGAGGAATCTCAGAAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000165 GO:0000186 GO:0001101 GO:0001932 GO:0001934 GO:0002229 GO:0002239 GO:0002831 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005769 GO:0005783 GO:0005794 GO:0005798 GO:0005802 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009787 GO:0009788 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0010648 GO:0012505 GO:0012506 GO:0012510 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0030665 GO:0031090 GO:0031323 GO:0031325 GO:0031347 GO:0031399 GO:0031401 GO:0031410 GO:0031982 GO:0031984 GO:0032101 GO:0032147 GO:0032268 GO:0032270 GO:0033674 GO:0035556 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0043900 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0080134 GO:0097708 GO:0098542 GO:0098588 GO:0098791 GO:0098805 GO:0140096 GO:1900150 GO:1900424 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902531 GO:1902533 GO:1905957 GO:1905958 GO:2000031 GO:2001023 GO:2001038
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EDR1 Pkinase_Tyr

Protein Analysis

225

Amino Acids

24.21

Weight (kDa)

5.49

Isoelectric Point (pI)

35.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribul_P_3_epim PF00834 6 - 203 2.2e-71 Ribulose-phosphate 3 epimerase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 631
AccB1I GGYRCC 2 cut(s) 89, 611
AciI CCGC 1 cut(s) 11
AclWI GGATC 1 cut(s) 326
AcsI RAATTY 1 cut(s) 402
AcuI CTGAAG 1 cut(s) 552
AcyI GRCGYC 2 cut(s) 59, 90
AdeI CACNNNGTG 2 cut(s) 149, 344
AfiI CCNNNNNNNGG 1 cut(s) 446
AgsI TTSAA 3 cut(s) 314, 374, 549
AhlI ACTAGT 1 cut(s) 650
AjnI CCWGG 3 cut(s) 340, 358, 439
AjuI GAANNNNNNNTTGG 2 cut(s) 429, 461
AluBI AGCT 3 cut(s) 251, 307, 566
AluI AGCT 3 cut(s) 251, 307, 566
Alw21I GWGCWC 1 cut(s) 154
AlwI GGATC 1 cut(s) 326
AoxI GGCC 2 cut(s) 66, 542
ApeKI GCWGC 1 cut(s) 563
ApoI RAATTY 1 cut(s) 402
Asp700I GAANNNNTTC 1 cut(s) 381
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 3 cut(s) 67, 418, 542
AsuHPI GGTGA 2 cut(s) 194, 410
AvaII GGWCC 1 cut(s) 418
BaeGI GKGCMC 1 cut(s) 616
BanI GGYRCC 2 cut(s) 89, 611
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 575
BccI CCATC 3 cut(s) 78, 113, 524
BceAI ACGGC 1 cut(s) 103
BciT130I CCWGG 3 cut(s) 342, 360, 441
BciVI GTATCC 2 cut(s) 295, 516
BcuI ACTAGT 1 cut(s) 650
BfaI CTAG 2 cut(s) 515, 651
BfoI RGCGCY 1 cut(s) 93
BfuAI ACCTGC 1 cut(s) 631
BfuI GTATCC 2 cut(s) 295, 516
BglI GCCNNNNNGGC 1 cut(s) 56
BisI GCNGC 2 cut(s) 12, 564
BlsI GCNGC 2 cut(s) 13, 565
Bme1390I CCNGG 3 cut(s) 342, 360, 441
Bme18I GGWCC 1 cut(s) 418
BmgT120I GGNCC 3 cut(s) 67, 418, 542
BmiI GGNNCC 4 cut(s) 91, 101, 438, 613
BmrFI CCNGG 3 cut(s) 342, 360, 441
BmsI GCATC 1 cut(s) 21
Bpu10I CCTNAGC 1 cut(s) 538
BpuEI CTTGAG 2 cut(s) 338, 664
BsaHI GRCGYC 2 cut(s) 59, 90
BsaJI CCNNGG 1 cut(s) 327
BsaWI WCCGGW 1 cut(s) 154
Bsc4I CCNNNNNNNGG 1 cut(s) 446
Bse3DI GCAATG 1 cut(s) 558
BseBI CCWGG 3 cut(s) 342, 360, 441
BseDI CCNNGG 1 cut(s) 327
BseGI GGATG 1 cut(s) 124
BseLI CCNNNNNNNGG 1 cut(s) 446
BseMI GCAATG 1 cut(s) 558
BseMII CTCAG 1 cut(s) 485
BseSI GKGCMC 1 cut(s) 616
BseXI GCAGC 1 cut(s) 575
BshFI GGCC 2 cut(s) 68, 544
BshNI GGYRCC 2 cut(s) 89, 611
BsiHKAI GWGCWC 1 cut(s) 154
BsiSI CCGG 2 cut(s) 155, 573
BslI CCNNNNNNNGG 1 cut(s) 446
BsmI GAATGC 1 cut(s) 81
BsnI GGCC 2 cut(s) 68, 544
Bsp1286I GDGCHC 2 cut(s) 154, 616
Bsp143I GATC 1 cut(s) 318
BspACI CCGC 1 cut(s) 11
BspANI GGCC 2 cut(s) 68, 544
BspCNI CTCAG 1 cut(s) 486
BspLI GGNNCC 4 cut(s) 91, 101, 438, 613
BspMI ACCTGC 1 cut(s) 631
BspPI GGATC 1 cut(s) 326
BspT107I GGYRCC 2 cut(s) 89, 611
BsrDI GCAATG 1 cut(s) 558
BssECI CCNNGG 1 cut(s) 327
BssMI GATC 1 cut(s) 318
BssNI GRCGYC 2 cut(s) 59, 90
BssT1I CCWWGG 1 cut(s) 327
Bst2UI CCWGG 3 cut(s) 342, 360, 441
Bst4CI ACNGT 2 cut(s) 27, 433
BstACI GRCGYC 2 cut(s) 59, 90
BstDEI CTNAG 3 cut(s) 494, 538, 666
BstF5I GGATG 1 cut(s) 124
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 1 cut(s) 321
BstMBI GATC 1 cut(s) 318
BstMWI GCNNNNNNNGC 4 cut(s) 20, 56, 65, 569
BstNI CCWGG 3 cut(s) 342, 360, 441
BstSCI CCNGG 3 cut(s) 340, 358, 439
BstSLI GKGCMC 1 cut(s) 616
BstV1I GCAGC 1 cut(s) 575
BsuI GTATCC 2 cut(s) 295, 516
BsuRI GGCC 2 cut(s) 68, 544
BtsCI GGATG 1 cut(s) 124
BtsIMutI CAGTG 2 cut(s) 491, 609
BveI ACCTGC 1 cut(s) 631
CfoI GCGC 1 cut(s) 92
Cfr13I GGNCC 3 cut(s) 67, 418, 542
CseI GACGC 1 cut(s) 48
CsiI ACCWGGT 1 cut(s) 340
CviAII CATG 7 cut(s) 106, 115, 275, 334, 407, 415, 463
DdeI CTNAG 3 cut(s) 494, 538, 666
DinI GGCGCC 1 cut(s) 91
DpnI GATC 1 cut(s) 320
DpnII GATC 1 cut(s) 318
DraIII CACNNNGTG 2 cut(s) 149, 344
Eco130I CCWWGG 1 cut(s) 327
Eco47I GGWCC 1 cut(s) 418
Eco57I CTGAAG 1 cut(s) 552
EcoO109I RGGNCCY 1 cut(s) 542
EcoRII CCWGG 3 cut(s) 340, 358, 439
EcoT14I CCWWGG 1 cut(s) 327
EgeI GGCGCC 1 cut(s) 91
EheI GGCGCC 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 327
FaeI CATG 7 cut(s) 109, 118, 278, 337, 410, 418, 466
FatI CATG 7 cut(s) 105, 114, 274, 333, 406, 414, 462
Fnu4HI GCNGC 2 cut(s) 12, 564
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 2 cut(s) 12, 564
FspBI CTAG 2 cut(s) 515, 651
GlaI GCGC 1 cut(s) 91
GluI GCNGC 2 cut(s) 12, 564
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 2 cut(s) 68, 544
HapII CCGG 2 cut(s) 155, 573
HgaI GACGC 1 cut(s) 48
HhaI GCGC 1 cut(s) 92
Hin1I GRCGYC 2 cut(s) 59, 90
Hin1II CATG 7 cut(s) 109, 118, 278, 337, 410, 418, 466
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HinfI GANTC 2 cut(s) 136, 662
HpaII CCGG 2 cut(s) 155, 573
HphI GGTGA 2 cut(s) 194, 410
Hpy166II GTNNAC 2 cut(s) 412, 452
Hpy188I TCNGA 7 cut(s) 43, 64, 135, 141, 165, 369, 669
Hpy188III TCNNGA 3 cut(s) 194, 224, 643
Hpy8I GTNNAC 2 cut(s) 412, 452
Hpy99I CGWCG 3 cut(s) 31, 43, 64
HpyAV CCTTC 3 cut(s) 389, 519, 555
HpyCH4III ACNGT 2 cut(s) 27, 433
HpyCH4V TGCA 2 cut(s) 563, 585
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 56, 65, 569
HpyF3I CTNAG 3 cut(s) 494, 538, 666
Hsp92I GRCGYC 2 cut(s) 59, 90
Hsp92II CATG 7 cut(s) 109, 118, 278, 337, 410, 418, 466
HspAI GCGC 1 cut(s) 90
KasI GGCGCC 1 cut(s) 89
Kzo9I GATC 1 cut(s) 318
LmnI GCTCC 3 cut(s) 105, 157, 575
Lsp1109I GCAGC 1 cut(s) 575
LweI GCATC 1 cut(s) 21
MabI ACCWGGT 1 cut(s) 340
MaeI CTAG 2 cut(s) 515, 651
MaeIII GTNAC 2 cut(s) 200, 211
MalI GATC 1 cut(s) 320
MboI GATC 1 cut(s) 318
MboII GAAGA 1 cut(s) 386
MhlI GDGCHC 2 cut(s) 154, 616
MluCI AATT 3 cut(s) 52, 295, 402
Mly113I GGCGCC 1 cut(s) 90
MmeI TCCRAC 2 cut(s) 21, 42
MnlI CCTC 8 cut(s) 58, 178, 231, 274, 396, 431, 517, 652
MroXI GAANNNNTTC 1 cut(s) 381
MspI CCGG 2 cut(s) 155, 573
MspR9I CCNGG 3 cut(s) 342, 360, 441
Mva1269I GAATGC 1 cut(s) 81
MvaI CCWGG 3 cut(s) 342, 360, 441
MwoI GCNNNNNNNGC 4 cut(s) 20, 56, 65, 569
NarI GGCGCC 1 cut(s) 90
NdeII GATC 1 cut(s) 318
NlaIII CATG 7 cut(s) 109, 118, 278, 337, 410, 418, 466
NlaIV GGNNCC 4 cut(s) 91, 101, 438, 613
NmuCI GTSAC 2 cut(s) 200, 211
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PctI GAATGC 1 cut(s) 81
PdmI GAANNNNTTC 1 cut(s) 381
PfeI GAWTC 2 cut(s) 136, 662
PflFI GACNNNGTC 1 cut(s) 416
PkrI GCNGC 2 cut(s) 13, 565
PluTI GGCGCC 1 cut(s) 93
Psp6I CCWGG 3 cut(s) 340, 358, 439
PspGI CCWGG 3 cut(s) 340, 358, 439
PspN4I GGNNCC 4 cut(s) 91, 101, 438, 613
PspPI GGNCC 3 cut(s) 67, 418, 542
PsyI GACNNNGTC 1 cut(s) 416
SatI GCNGC 2 cut(s) 12, 564
Sau3AI GATC 1 cut(s) 318
Sau96I GGNCC 3 cut(s) 67, 418, 542
ScrFI CCNGG 3 cut(s) 342, 360, 441
SduI GDGCHC 2 cut(s) 154, 616
SexAI ACCWGGT 1 cut(s) 340
SfaNI GCATC 1 cut(s) 21
SfoI GGCGCC 1 cut(s) 91
SinI GGWCC 1 cut(s) 418
SmlI CTYRAG 2 cut(s) 353, 643
SmoI CTYRAG 2 cut(s) 353, 643
SpeI ACTAGT 1 cut(s) 650
Sse9I AATT 3 cut(s) 52, 295, 402
SsiI CCGC 1 cut(s) 11
SspDI GGCGCC 1 cut(s) 89
SspMI CTAG 2 cut(s) 515, 651
StyD4I CCNGG 3 cut(s) 340, 358, 439
StyI CCWWGG 1 cut(s) 327
TaaI ACNGT 2 cut(s) 27, 433
TaqI TCGA 2 cut(s) 29, 73
TasI AATT 3 cut(s) 52, 295, 402
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 2 cut(s) 136, 662
TscAI CASTG 2 cut(s) 498, 609
TseFI GTSAC 2 cut(s) 200, 211
TseI GCWGC 1 cut(s) 563
Tsp45I GTSAC 2 cut(s) 200, 211
TspDTI ATGAA 3 cut(s) 263, 395, 451
TspGWI ACGGA 1 cut(s) 628
TspRI CASTG 2 cut(s) 498, 609
Tth111I GACNNNGTC 1 cut(s) 416
VpaK11BI GGWCC 1 cut(s) 418
XapI RAATTY 1 cut(s) 402
XmnI GAANNNNTTC 1 cut(s) 381
XspI CTAG 2 cut(s) 515, 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.