Rroxscaffold_6G00429460

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0004456
Physical Location & Seq
Forward (+)
49733689 .. 49741339
7651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00429460.1

Sequence Viewer

Length: 2859 bp
ATGAAGCACATTTTCAAGAAGCTTCATATAGGAAGCAACCACGACCCGGCAGCTCGATCGAACGAGCCACCAACAGCGTTGACGTCACCTTCACCGTCATACGACTCCGATCACCGGCAGAGCGCCGGGAACCATCCCCCGGCGAGTGCTTTTTCTTCGTCTTCGTCGTCGTCGTCGTCGCCGGCGGGGGCGGTACCGGCTAACGGAGGTGTCGGTACCAATTCGGAGTCGTCTGCGACGGCAACGACCGGGAATCGGCCGGACTATATGTTGTCGGAGGAGGAGTTTCAGGTGCAGCTTGCGCTGGCGATCAGTGCTTCGAATTCGGATGATCCGGAGAAGGATCAGATCCGTACGGCGACGATGCTGAGCTTGGGCGGCGGCCGTCGTGGTGGTGATCAGACGGGGGATGAGGTGGATGCGGCCGCCGCGGAGACCTTGTCCAGGCACTATTGGGAATACAATGTGCTAGACTACGACGAAAAAGTGGTTGATGGGTTTTATGATGTATATGGACTTTCCACGGATTCTGCAGTACAAGGAAAAATGCCTTCTCTCGCAAATCTTGAAACAAACCTTGGGAGATCTGGATTTGAAGTTTCATTAGTAAATCGAACACTTGATCCTACCTTGGAAGAGTTGGTGCAAATTGCACAGTGTATTGCGGTAGACTGCCCCATCACCAATGTTGGAATTTTGGTACAGAGGCTTGCTGAACTCGTTAGTGGACATATGGGCGGGCCTGTAAAGGATGCTAATATCATCTTGGCAAGGTGGATGGAAAGAAGTTCAGAGTTGAGGGCATCTTCACAAACAATTGTACTACCGATTGGGTCCATAACCATTGGCCTCTCCCGACATCGTGCTTTACTTTTCAAGGTATTAGCTGACAGCATCAAGATGCCTTGCAGACTGCTTAAGGGTGTGCACTACACAGGTGTCGAGGATGGTGCTATTAATGTAGTAAAGTTGGAGGATGACAGGCTGCATATACAAGTATCTTTGATTTTTCTAAGAGCTATCAACTCAGGCTGTTTAAGCTTCAACGTGGTTTTAATTTATAGTTCATTTGACAGGGAGTTTATGGTGGATCTTATGGCTGATCCTGGAACACTCATACCAGCTGACAATCCAAGTGCAAAGGACACTACTTTGAAGCCAATCAATCCGAAATCGAACACAATCCCAACTTTCCCTTCTTTGATTGATTCTGAAATTGTGTACTCACGACCAAAGCCATTACATGGAGAGGGAAGCAGCCAAAACTTGCAAACTTCTGAGAAAGCAGAATCATTCTGGGGTGAAATTGGCGGCAGAGGAGTTGGTTCTTCTGGAGTCCCCAAGAGAGGAACTAAATTAGATCATCTTCCCTCATCAGCTTTCGAAAATTCACGGTACAGAGGGAACCGTGGGGCACCTGCAGTTGATGGTGTGAGGATGAATCAAAATGTAGTTCCATATGCTCAAAATAACTCGGAAGACTCTAACAGTCTTTTTGCAGATCTTAACCCATTCCAAGGAAAAGGTACTGGGAAAGCTCCTATATATAACAAACCTATGGAGAATAAGGTCGATGAGCTTCAGAGACCAAGAAATAATCTTGCCTCATACACAAAAAATGTTCGTGCACACAATGAAGTCCCAAAAAAGAAGGAGTATGATTATTTGGATGGAATTATCCCAAGAGTTAATCGAGAACCCAATGGTTATAATCCGTTATCTTCAGCTTCTACCAGCTCCACTAAATCTGAACAGATAAATGCTGGTGGTTTCAAATCTACTGCACATCCAAATATGTCTGAGTATTTACAAAGTGGCTCTGTAGAACGTGAGAATAATGTAAATGGCTTCCATGATCGAAGAAAGTTCACTCATGAAAGATTCATGGAGACCAATTCCAAACTGAAGGATCCAGAAAGTTGCAACTCATCCTTTGATTCCATAACAAGTAGGGTTGAGCAAGTATTTGAGGATGTTGATGTAGGTGAAAGTGAAATTCCGTGGGAAGATCTGGTTATTGGAGAAAGAATTGGACTTGGTTCATATGGAGAGGTGTACCATGCTGACTGGAATGGCACGGAAGTTGCTGTGAAGAAGTTCCTAGACCAGGATTTCTCGGGTGCTGCTTTGGCTGAGTTCAAAAGAGAAGTACGGATAATGCGTAGGCTGCGCCATCCAAATGTTGTGCTTTTTATGGGTGCTATTACGCGTCCTCCTAACCTCTCTATCATTACAGAGTTCCTTCCAAGGGGAAGTCTATATCGGATTATCCATCGTCCTCATTGTCAAATTGAAGAGAGACGAAGATTAAAGATGGCTCTTGATGTGGCAAGGGGTATGAATTGCTTGCATTCGAGCAACCCCACTATTGTTCACCGGGATTTGAAATCTCCAAATCTATTGGTTGATAAGAACTGGAATGTGAAGGTAGGTGATTTTGGACTGTCGCGCTTGAAACATAACACTTTCTTGTCCTCCAAATCAACTGCTGGAACGCCTGAGTGGATGGCACCAGAAGTTTTGCGCAACGAAAACTCAAATGAAAAGTGTGATGTATATAGCTTTGGAGTAATTTTGTGGGAACTTGCTACTCTAAAATTGCCTTGGAGTGGGATGAACCCGATGCAAGTTGTGGGTGCGGTGGGTTTCCAGAATCGCCGCCTTGACATCCCTAAAGAAGTTGATCCCCCTGTTGCAAGGATAATTTGGCAATGCTGGCAGACCGACCCAAACTTGCGCCCCTCGTTTTCAGAGCTCACGGTAGCTCTCAAGCCCCTGCAACGGCTTGTCACTCCACCAAATATGGACCAGCCCAGCTCACCTCTACGACAAGGGATCTCAGTAAATTCTATAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000165 GO:0000186 GO:0001101 GO:0001932 GO:0001934 GO:0002229 GO:0002239 GO:0002831 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005769 GO:0005783 GO:0005794 GO:0005798 GO:0005802 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009787 GO:0009788 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0010648 GO:0012505 GO:0012506 GO:0012510 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0030665 GO:0031090 GO:0031323 GO:0031325 GO:0031347 GO:0031399 GO:0031401 GO:0031410 GO:0031982 GO:0031984 GO:0032101 GO:0032147 GO:0032268 GO:0032270 GO:0033674 GO:0035556 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0043900 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0080134 GO:0097708 GO:0098542 GO:0098588 GO:0098791 GO:0098805 GO:0140096 GO:1900150 GO:1900424 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902531 GO:1902533 GO:1905957 GO:1905958 GO:2000031 GO:2001023 GO:2001038
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EDR1 Pkinase_Tyr

Protein Analysis

952

Amino Acids

104.88

Weight (kDa)

6.26

Isoelectric Point (pI)

45.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR1_CTR1_ARMC3_pept PF14381 144 - 328 3.3e-65 EDR1/CTR1/ARMC3, peptidase-like
PK_Tyr_Ser-Thr PF07714 672 - 921 1.3e-63 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 673 - 919 2.3e-51 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1710
AarI CACCTGC 1 cut(s) 1426
AatII GACGTC 1 cut(s) 86
Acc16I TGCGCA 1 cut(s) 2525
Acc36I ACCTGC 1 cut(s) 1426
Acc65I GGTACC 2 cut(s) 193, 215
AccB1I GGYRCC 4 cut(s) 193, 215, 1414, 2509
AccB7I CCANNNNNTGG 1 cut(s) 1244
AccI GTMKAC 1 cut(s) 669
AccII CGCG 3 cut(s) 431, 2209, 2449
AccIII TCCGGA 1 cut(s) 334
AcoI YGGCCR 3 cut(s) 257, 382, 423
AcsI RAATTY 5 cut(s) 322, 693, 1387, 1995, 2845
AcuI CTGAAG 3 cut(s) 1565, 1707, 1925
AcyI GRCGYC 1 cut(s) 83
AflII CTTAAG 1 cut(s) 917
AflIII ACRYGT 1 cut(s) 2207
AjnI CCWGG 3 cut(s) 443, 1105, 2106
AjuI GAANNNNNNNTTGG 4 cut(s) 561, 593, 1180, 1212
AloI GAACNNNNNNTCC 2 cut(s) 607, 639
Alw21I GWGCWC 3 cut(s) 930, 1630, 2757
Alw26I GTCTC 4 cut(s) 428, 1579, 1883, 2293
Alw44I GTGCAC 2 cut(s) 926, 1626
Ama87I CYCGRG 1 cut(s) 2116
Aor13HI TCCGGA 1 cut(s) 334
AoxI GGCC 5 cut(s) 257, 382, 423, 740, 847
ApaLI GTGCAC 2 cut(s) 926, 1626
ApeKI GCWGC 6 cut(s) 50, 295, 985, 1257, 2123, 2167
ApoI RAATTY 5 cut(s) 322, 693, 1387, 1995, 2845
AseI ATTAAT 1 cut(s) 957
Asp700I GAANNNNTTC 1 cut(s) 2096
Asp718I GGTACC 2 cut(s) 193, 215
AspLEI GCGC 6 cut(s) 125, 304, 2172, 2451, 2526, 2739
AspS9I GGNCC 3 cut(s) 740, 834, 2806
AsuC2I CCSGG 5 cut(s) 47, 127, 140, 250, 2378
AsuII TTCGAA 2 cut(s) 320, 1383
AvaI CYCGRG 1 cut(s) 2116
AvaII GGWCC 2 cut(s) 834, 2806
BaeGI GKGCMC 3 cut(s) 930, 1417, 1630
BamHI GGATCC 1 cut(s) 1909
BanI GGYRCC 4 cut(s) 193, 215, 1414, 2509
BanII GRGCYC 1 cut(s) 2757
BbsI GAAGAC 2 cut(s) 153, 1485
Bbv12I GWGCWC 3 cut(s) 930, 1630, 2757
BbvI GCAGC 6 cut(s) 62, 307, 972, 1269, 2110, 2154
BceAI ACGGC 4 cut(s) 255, 369, 372, 2798
BcgI CGANNNNNNTGC 4 cut(s) 39, 73, 932, 966
BciT130I CCWGG 3 cut(s) 445, 1107, 2108
BclI TGATCA 1 cut(s) 397
BcnI CCSGG 5 cut(s) 47, 127, 140, 250, 2378
BcoDI GTCTC 4 cut(s) 428, 1579, 1883, 2293
BfaI CTAG 2 cut(s) 470, 2102
BfmI CTRYAG 3 cut(s) 531, 1419, 1821
BfoI RGCGCY 1 cut(s) 126
BfrI CTTAAG 1 cut(s) 917
BfuAI ACCTGC 1 cut(s) 1426
BglII AGATCT 3 cut(s) 584, 1501, 2008
BlpI GCTNAGC 1 cut(s) 368
Bme1390I CCNGG 8 cut(s) 47, 127, 140, 250, 445, 1107, 2108, 2378
Bme18I GGWCC 2 cut(s) 834, 2806
BmeT110I CYCGRG 1 cut(s) 2116
BmgT120I GGNCC 3 cut(s) 740, 834, 2806
BmiI GGNNCC 8 cut(s) 131, 195, 217, 835, 1406, 1416, 1911, 2511
BmrFI CCNGG 8 cut(s) 47, 127, 140, 250, 445, 1107, 2108, 2378
BmrI ACTGGG 1 cut(s) 1539
BmsI GCATC 7 cut(s) 354, 409, 742, 812, 891, 903, 2613
BmuI ACTGGG 1 cut(s) 1539
BpiI GAAGAC 2 cut(s) 153, 1485
BpmI CTGGAG 1 cut(s) 1353
Bpu1102I GCTNAGC 1 cut(s) 368
Bpu14I TTCGAA 2 cut(s) 320, 1383
BpuEI CTTGAG 1 cut(s) 2753
BpuMI CCSGG 5 cut(s) 47, 127, 140, 250, 2378
BsaHI GRCGYC 1 cut(s) 83
BsaI GGTCTC 3 cut(s) 428, 1579, 1883
BsaWI WCCGGW 1 cut(s) 334
BsaXI ACNNNNNCTCC 6 cut(s) 269, 299, 425, 455, 2197, 2227
Bse118I RCCGGY 3 cut(s) 114, 181, 196
Bse1I ACTGG 3 cut(s) 1534, 2072, 2420
Bse3DI GCAATG 1 cut(s) 2717
BseAI TCCGGA 1 cut(s) 334
BseBI CCWGG 3 cut(s) 445, 1107, 2108
BseMI GCAATG 1 cut(s) 2717
BseMII CTCAG 7 cut(s) 359, 1041, 1269, 1791, 2124, 2490, 2853
BseNI ACTGG 3 cut(s) 1534, 2072, 2420
BseRI GAGGAG 3 cut(s) 293, 296, 1332
BseSI GKGCMC 3 cut(s) 930, 1417, 1630
BseX3I CGGCCG 3 cut(s) 257, 382, 423
BseXI GCAGC 6 cut(s) 62, 307, 972, 1269, 2110, 2154
BseYI CCCAGC 1 cut(s) 2813
BsgI GTGCAG 2 cut(s) 314, 1767
Bsh1236I CGCG 3 cut(s) 431, 2209, 2449
Bsh1285I CGRYCG 5 cut(s) 59, 249, 260, 385, 426
BshFI GGCC 5 cut(s) 259, 384, 425, 742, 849
BshNI GGYRCC 4 cut(s) 193, 215, 1414, 2509
BsiEI CGRYCG 5 cut(s) 59, 249, 260, 385, 426
BsiHKAI GWGCWC 3 cut(s) 930, 1630, 2757
BsiHKCI CYCGRG 1 cut(s) 2116
BsiWI CGTACG 1 cut(s) 353
BslFI GGGAC 2 cut(s) 1322, 1625
BsmAI GTCTC 4 cut(s) 428, 1579, 1883, 2293
BsmBI CGTCTC 1 cut(s) 2293
BsmFI GGGAC 2 cut(s) 1322, 1625
BsmI GAATGC 1 cut(s) 2350
BsnI GGCC 5 cut(s) 259, 384, 425, 742, 849
Bso31I GGTCTC 3 cut(s) 428, 1579, 1883
BsoBI CYCGRG 1 cut(s) 2116
Bsp119I TTCGAA 2 cut(s) 320, 1383
Bsp1286I GDGCHC 4 cut(s) 930, 1417, 1630, 2757
Bsp13I TCCGGA 1 cut(s) 334
Bsp1720I GCTNAGC 1 cut(s) 368
BspANI GGCC 5 cut(s) 259, 384, 425, 742, 849
BspCNI CTCAG 7 cut(s) 360, 1040, 1270, 1792, 2125, 2491, 2852
BspEI TCCGGA 1 cut(s) 334
BspFNI CGCG 3 cut(s) 431, 2209, 2449
BspHI TCATGA 1 cut(s) 1873
BspLI GGNNCC 8 cut(s) 131, 195, 217, 835, 1406, 1416, 1911, 2511
BspMAI CTGCAG 2 cut(s) 535, 1423
BspMI ACCTGC 1 cut(s) 1426
BspT104I TTCGAA 2 cut(s) 320, 1383
BspT107I GGYRCC 4 cut(s) 193, 215, 1414, 2509
BspTI CTTAAG 1 cut(s) 917
BspTNI GGTCTC 3 cut(s) 428, 1579, 1883
BsrDI GCAATG 1 cut(s) 2717
BsrFI RCCGGY 3 cut(s) 114, 181, 196
BsrI ACTGG 3 cut(s) 1534, 2072, 2420
BssAI RCCGGY 3 cut(s) 114, 181, 196
BssNI GRCGYC 1 cut(s) 83
BssT1I CCWWGG 5 cut(s) 577, 630, 1516, 2246, 2603
Bst2UI CCWGG 3 cut(s) 445, 1107, 2108
Bst4CI ACNGT 7 cut(s) 96, 657, 1395, 1409, 1490, 2445, 2761
Bst6I CTCTTC 2 cut(s) 630, 2289
BstACI GRCGYC 1 cut(s) 83
BstAFI CTTAAG 1 cut(s) 917
BstBI TTCGAA 2 cut(s) 320, 1383
BstC8I GCNNGC 7 cut(s) 183, 300, 306, 711, 740, 2348, 2717
BstDEI CTNAG 8 cut(s) 368, 1013, 1027, 1278, 1800, 2133, 2499, 2839
BstDSI CCRYGG 4 cut(s) 429, 522, 1408, 2000
BstENI CCTNNNNNAGG 2 cut(s) 442, 2105
BstFNI CGCG 3 cut(s) 431, 2209, 2449
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 6 cut(s) 125, 304, 2172, 2451, 2526, 2739
BstMAI GTCTC 4 cut(s) 428, 1579, 1883, 2293
BstMCI CGRYCG 5 cut(s) 59, 249, 260, 385, 426
BstMWI GCNNNNNNNGC 9 cut(s) 197, 301, 314, 378, 428, 1038, 2129, 2167, 2716
BstNI CCWGG 3 cut(s) 445, 1107, 2108
BstSCI CCNGG 8 cut(s) 45, 125, 138, 248, 443, 1105, 2106, 2376
BstSFI CTRYAG 3 cut(s) 531, 1419, 1821
BstSLI GKGCMC 3 cut(s) 930, 1417, 1630
BstUI CGCG 3 cut(s) 431, 2209, 2449
BstV1I GCAGC 6 cut(s) 62, 307, 972, 1269, 2110, 2154
BstV2I GAAGAC 2 cut(s) 153, 1485
BstX2I RGATCY 7 cut(s) 348, 584, 1090, 1501, 1909, 2008, 2835
BstYI RGATCY 7 cut(s) 348, 584, 1090, 1501, 1909, 2008, 2835
BstZI CGGCCG 3 cut(s) 257, 382, 423
BsuRI GGCC 5 cut(s) 259, 384, 425, 742, 849
BtgI CCRYGG 4 cut(s) 429, 522, 1408, 2000
BtsIMutI CAGTG 2 cut(s) 319, 662
BveI ACCTGC 1 cut(s) 1426
Cac8I GCNNGC 7 cut(s) 183, 300, 306, 711, 740, 2348, 2717
CciI TCATGA 1 cut(s) 1873
CciNI GCGGCCGC 1 cut(s) 423
CfoI GCGC 6 cut(s) 125, 304, 2172, 2451, 2526, 2739
Cfr10I RCCGGY 3 cut(s) 114, 181, 196
Cfr13I GGNCC 3 cut(s) 740, 834, 2806
Cfr42I CCGCGG 1 cut(s) 432
CseI GACGC 1 cut(s) 2198
CviAII CATG 6 cut(s) 1244, 1853, 1874, 1885, 2060, 2856
DdeI CTNAG 8 cut(s) 368, 1013, 1027, 1278, 1800, 2133, 2499, 2839
EaeI YGGCCR 3 cut(s) 257, 382, 423
EagI CGGCCG 3 cut(s) 257, 382, 423
Eam1104I CTCTTC 2 cut(s) 630, 2289
EarI CTCTTC 2 cut(s) 630, 2289
Ecl136II GAGCTC 1 cut(s) 2755
EclXI CGGCCG 3 cut(s) 257, 382, 423
Eco130I CCWWGG 5 cut(s) 577, 630, 1516, 2246, 2603
Eco24I GRGCYC 1 cut(s) 2757
Eco31I GGTCTC 3 cut(s) 428, 1579, 1883
Eco47I GGWCC 2 cut(s) 834, 2806
Eco52I CGGCCG 3 cut(s) 257, 382, 423
Eco53kI GAGCTC 1 cut(s) 2755
Eco57I CTGAAG 3 cut(s) 1565, 1707, 1925
Eco88I CYCGRG 1 cut(s) 2116
EcoICRI GAGCTC 1 cut(s) 2755
EcoNI CCTNNNNNAGG 2 cut(s) 442, 2105
EcoRI GAATTC 1 cut(s) 322
EcoRII CCWGG 3 cut(s) 443, 1105, 2106
EcoT14I CCWWGG 5 cut(s) 577, 630, 1516, 2246, 2603
EcoT38I GRGCYC 1 cut(s) 2757
ErhI CCWWGG 5 cut(s) 577, 630, 1516, 2246, 2603
Esp3I CGTCTC 1 cut(s) 2293
FaeI CATG 6 cut(s) 1247, 1856, 1877, 1888, 2063, 2859
FaqI GGGAC 2 cut(s) 1322, 1625
FatI CATG 6 cut(s) 1243, 1852, 1873, 1884, 2059, 2855
FauI CCCGC 2 cut(s) 178, 731
FauNDI CATATG 3 cut(s) 732, 1459, 2044
FbaI TGATCA 1 cut(s) 397
FblI GTMKAC 1 cut(s) 669
FriOI GRGCYC 1 cut(s) 2757
FspBI CTAG 2 cut(s) 470, 2102
FspI TGCGCA 1 cut(s) 2525
GlaI GCGC 6 cut(s) 124, 303, 2171, 2450, 2525, 2738
GsaI CCCAGC 1 cut(s) 2817
GsuI CTGGAG 1 cut(s) 1353
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 5 cut(s) 259, 384, 425, 742, 849
HgaI GACGC 1 cut(s) 2198
HhaI GCGC 6 cut(s) 125, 304, 2172, 2451, 2526, 2739
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 6 cut(s) 1247, 1856, 1877, 1888, 2063, 2859
Hin6I GCGC 6 cut(s) 123, 302, 2170, 2449, 2524, 2737
HinP1I GCGC 6 cut(s) 123, 302, 2170, 2449, 2524, 2737
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HindIII AAGCTT 2 cut(s) 20, 1039
Hpy166II GTNNAC 9 cut(s) 81, 670, 728, 928, 1222, 1628, 1869, 2056, 2374
Hpy8I GTNNAC 9 cut(s) 81, 670, 728, 928, 1222, 1628, 1869, 2056, 2374
Hpy99I CGWCG 9 cut(s) 169, 172, 175, 178, 181, 241, 364, 390, 482
HpyAV CCTTC 8 cut(s) 99, 334, 561, 1206, 1645, 1900, 2252, 2419
HpyCH4III ACNGT 7 cut(s) 96, 657, 1395, 1409, 1490, 2445, 2761
HpyCH4IV ACGT 3 cut(s) 83, 1047, 1828
HpyF10VI GCNNNNNNNGC 9 cut(s) 197, 301, 314, 378, 428, 1038, 2129, 2167, 2716
HpyF3I CTNAG 8 cut(s) 368, 1013, 1027, 1278, 1800, 2133, 2499, 2839
HpySE526I ACGT 3 cut(s) 83, 1047, 1828
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 6 cut(s) 1247, 1856, 1877, 1888, 2063, 2859
HspAI GCGC 6 cut(s) 123, 302, 2170, 2449, 2524, 2737
Kpn2I TCCGGA 1 cut(s) 334
KpnI GGTACC 2 cut(s) 197, 219
KroI GCCGGC 1 cut(s) 181
KroNI GCCGGC 1 cut(s) 183
Ksp22I TGATCA 1 cut(s) 397
KspI CCGCGG 1 cut(s) 432
LmnI GCTCC 2 cut(s) 1543, 1742
Lsp1109I GCAGC 6 cut(s) 62, 307, 972, 1269, 2110, 2154
LweI GCATC 7 cut(s) 354, 409, 742, 812, 891, 903, 2613
MaeI CTAG 2 cut(s) 470, 2102
MaeII ACGT 3 cut(s) 83, 1047, 1828
MaeIII GTNAC 2 cut(s) 84, 2788
MfeI CAATTG 1 cut(s) 816
MflI RGATCY 7 cut(s) 348, 584, 1090, 1501, 1909, 2008, 2835
MhlI GDGCHC 4 cut(s) 930, 1417, 1630, 2757
MluI ACGCGT 1 cut(s) 2207
MlyI GAGTC 4 cut(s) 98, 236, 1344, 1475
MmeI TCCRAC 3 cut(s) 255, 670, 951
MreI CGCCGGCG 1 cut(s) 181
MroI TCCGGA 1 cut(s) 334
MroNI GCCGGC 1 cut(s) 181
MroXI GAANNNNTTC 1 cut(s) 2096
MseI TTAA 7 cut(s) 918, 957, 1037, 1055, 1506, 1689, 2309
MslI CAYNNNNRTG 2 cut(s) 899, 2178
MspA1I CMGCKG 2 cut(s) 431, 1124
MspCI CTTAAG 1 cut(s) 917
MspR9I CCNGG 8 cut(s) 47, 127, 140, 250, 445, 1107, 2108, 2378
MunI CAATTG 1 cut(s) 816
Mva1269I GAATGC 1 cut(s) 2350
MvaI CCWGG 3 cut(s) 445, 1107, 2108
MvnI CGCG 3 cut(s) 431, 2209, 2449
MwoI GCNNNNNNNGC 9 cut(s) 197, 301, 314, 378, 428, 1038, 2129, 2167, 2716
NaeI GCCGGC 1 cut(s) 183
NciI CCSGG 5 cut(s) 47, 127, 140, 250, 2378
NdeI CATATG 3 cut(s) 732, 1459, 2044
NgoMIV GCCGGC 1 cut(s) 181
NlaIII CATG 6 cut(s) 1247, 1856, 1877, 1888, 2063, 2859
NlaIV GGNNCC 8 cut(s) 131, 195, 217, 835, 1406, 1416, 1911, 2511
NmuCI GTSAC 2 cut(s) 84, 2788
NotI GCGGCCGC 1 cut(s) 423
NsbI TGCGCA 1 cut(s) 2525
NspV TTCGAA 2 cut(s) 320, 1383
PagI TCATGA 1 cut(s) 1873
PaqCI CACCTGC 1 cut(s) 1426
PcsI WCGNNNNNNNCGW 4 cut(s) 164, 170, 173, 2158
PctI GAATGC 1 cut(s) 2350
PdiI GCCGGC 1 cut(s) 183
PdmI GAANNNNTTC 1 cut(s) 2096
PfeI GAWTC 8 cut(s) 253, 527, 1208, 1289, 1441, 1881, 1937, 2653
Pfl23II CGTACG 1 cut(s) 353
PflFI GACNNNGTC 1 cut(s) 439
PflMI CCANNNNNTGG 1 cut(s) 1244
PfoI TCCNGGA 1 cut(s) 1105
Ple19I CGATCG 1 cut(s) 59
PleI GAGTC 4 cut(s) 98, 235, 1343, 1475
PpsI GAGTC 4 cut(s) 98, 235, 1343, 1475
PshBI ATTAAT 1 cut(s) 957
PsiI TTATAA 1 cut(s) 1710
Psp124BI GAGCTC 1 cut(s) 2757
Psp6I CCWGG 3 cut(s) 443, 1105, 2106
PspFI CCCAGC 1 cut(s) 2813
PspGI CCWGG 3 cut(s) 443, 1105, 2106
PspLI CGTACG 1 cut(s) 353
PspN4I GGNNCC 8 cut(s) 131, 195, 217, 835, 1406, 1416, 1911, 2511
PspPI GGNCC 3 cut(s) 740, 834, 2806
PstI CTGCAG 2 cut(s) 535, 1423
PsuI RGATCY 7 cut(s) 348, 584, 1090, 1501, 1909, 2008, 2835
PsyI GACNNNGTC 1 cut(s) 439
PvuI CGATCG 1 cut(s) 59
PvuII CAGCTG 1 cut(s) 1124
RseI CAYNNNNRTG 2 cut(s) 899, 2178
SacI GAGCTC 1 cut(s) 2757
SacII CCGCGG 1 cut(s) 432
SaqAI TTAA 7 cut(s) 918, 957, 1037, 1055, 1506, 1689, 2309
Sau96I GGNCC 3 cut(s) 740, 834, 2806
SchI GAGTC 4 cut(s) 98, 236, 1344, 1475
ScrFI CCNGG 8 cut(s) 47, 127, 140, 250, 445, 1107, 2108, 2378
SduI GDGCHC 4 cut(s) 930, 1417, 1630, 2757
SfaNI GCATC 7 cut(s) 354, 409, 742, 812, 891, 903, 2613
SfcI CTRYAG 3 cut(s) 531, 1419, 1821
Sfr303I CCGCGG 1 cut(s) 432
SfuI TTCGAA 2 cut(s) 320, 1383
SgrAI CRCCGGYG 1 cut(s) 181
SgrBI CCGCGG 1 cut(s) 432
SinI GGWCC 2 cut(s) 834, 2806
SmiMI CAYNNNNRTG 2 cut(s) 899, 2178
SmlI CTYRAG 2 cut(s) 917, 2768
SmoI CTYRAG 2 cut(s) 917, 2768
SspMI CTAG 2 cut(s) 470, 2102
SstI GAGCTC 1 cut(s) 2757
StyD4I CCNGG 8 cut(s) 45, 125, 138, 248, 443, 1105, 2106, 2376
StyI CCWWGG 5 cut(s) 577, 630, 1516, 2246, 2603
TaaI ACNGT 7 cut(s) 96, 657, 1395, 1409, 1490, 2445, 2761
TaiI ACGT 3 cut(s) 86, 1050, 1831
TaqII GACCGA 1 cut(s) 2738
TatI WGTACW 3 cut(s) 535, 820, 1221
TauI GCSGC 7 cut(s) 381, 384, 425, 428, 431, 1314, 2661
TfiI GAWTC 8 cut(s) 253, 527, 1208, 1289, 1441, 1881, 1937, 2653
Tru1I TTAA 7 cut(s) 918, 957, 1037, 1055, 1506, 1689, 2309
Tru9I TTAA 7 cut(s) 918, 957, 1037, 1055, 1506, 1689, 2309
TscAI CASTG 2 cut(s) 319, 662
TseFI GTSAC 2 cut(s) 84, 2788
TseI GCWGC 6 cut(s) 50, 295, 985, 1257, 2123, 2167
Tsp45I GTSAC 2 cut(s) 84, 2788
TspGWI ACGGA 7 cut(s) 219, 341, 539, 1704, 1989, 2093, 2167
TspRI CASTG 2 cut(s) 319, 662
Tth111I GACNNNGTC 1 cut(s) 439
Van91I CCANNNNNTGG 1 cut(s) 1244
Vha464I CTTAAG 1 cut(s) 917
VneI GTGCAC 2 cut(s) 926, 1626
VpaK11BI GGWCC 2 cut(s) 834, 2806
VspI ATTAAT 1 cut(s) 957
XagI CCTNNNNNAGG 2 cut(s) 442, 2105
XapI RAATTY 5 cut(s) 322, 693, 1387, 1995, 2845
XmiI GTMKAC 1 cut(s) 669
XmnI GAANNNNTTC 1 cut(s) 2096
XspI CTAG 2 cut(s) 470, 2102
ZraI GACGTC 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.