RchiOBHm_Chr3g0452451

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0004456
Physical Location & Seq
Forward (+)
3055002 .. 3062696
7695 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41959

Sequence Viewer

Length: 2763 bp
ATGAAGCACATTTTCAAGAAGCTTCACATAGGGAGCAACCACGACCCGGCGGCTCGATCGAACGAGCCACCAACAGCGTTGACGTCACCTTCACCGTCATGCGACTCCGATCACCGTCAGAGCGCCGGGAACCATCCCCCGGCGAGTGCTTTTTCTTCGTCTTCTTCGTCGTCGTCGCCGGCGGGGACGGTACCGGCGAACGGAGGTGTAGGTGCCAGTTCGGAGTCGTCTGCGACGGCGACGACCGGGAGTCGGTCGGACTATATGTTGTCGGAGGAGGAGTTTCAGGTGCAGCTTGCGCTGGCGATCAGTGCTTCGAATTCGGATGATCCGGAGAAGGATCAGATCCGTGCGGCGACGATGCTGAGCTTGGGCGGCGGCCGTCGTGGTGGTGATCAGACGGGGGATGAGGTGGATGCGGCGGCCGCGGAGACCTTGTCCAGGCACTATTGGGAATACAATGTGCTAGACTACGACGAAAAAGTGGTTGATGGGTTTTATGATGTATATGGACTTTCCACGGATTCCGCAGTACAAGGAAAAATGCCTTCTCTCGCAAATCTTGAAACAAACCTTGGGAGATCTGGATTTGAAGTTTCATTAGTAAATCGAACACTTGATCCTACCTTGGAAGAGTTGGTGCAAATTGCACAGTGTATTGCGGTAGACTGCCCCATCACCAATGTTGGAATTTTGGTACAGAGGCTTGCTGAACTCGTTAGCGGACATATGGGCGGGCCTGTAAAGGATGCTAATATCATCTTGGCAAGGTGGATGGAAAGAAGTTCAGAGTTGAGGGCATCTTCACAAACAATTGTACTACCTATTGGGTCCATAACCATTGGCCTCTCCCGACATCGTGCTTTACTTTTCAAGGTATTAGCTGACAGCATCAAGATGCCTTGCAGACTGCTTAAGGGTGTGCACTACACAGGTGTCGAGGATGGTGCTATTAATGTAGTAAAGTTGGAGGATGACAGGGAGTTTATGGTGGATCTTATGGCTGATCCTGGAACACTCATACCGGTTGACAATCCAAGTGCAAAGGACACTACTTTCATGCCAATCAATCCGAAATCGAACACAATCCCAACTTTCCCTTCTTTGATTGATTCTGAAATTGTGTACTCACGACCAAAGCCATTACATGGAGAGGGAAGCAGCCAAAACTTGCAAACTTCTGAGAAAGCAGAATCATTCTGGGGTGAAATTGGCGGCAGAGGAGTTGGTTCTTCTGGAGTCCCCAAGAGAGGAACTCAATTAGATCATCTTCCCTCGTCAGCTTTCGAAAATTCACGGTACAGAGGGAACCGTGGGGCACCTGCAGTTGATGGTGTGAGGATGAAACAAAATGTAGTTCCATATGCTCAAAATAACTCGGAAGACTCTAACAGTCTTTTTGCAGATCTTAACCCATTCCAAGTAAAAGGAACTGGGAAGGCTCCTATATATAACAAACCTATGGAGAATAAGGCCGATGAGCTTCAGAGACCAAGAAATAATCTTGCCTCATACACAAAAAATGTTCGTGCACACAATGAAGTCCCGAAAAAGAAGGAGTATGATTATTTGGATGGAATTATCCCAAGAGTTAATCGAGAACCCAATGGTTATAATCCGTCATCTTCAGCTTCGACCAGCTCCACTAAATCTGAACAGATCAATACTGGTGGTTTCAAATCTACTGCACATCCAAATATGTCTGAGTATTTACAAAGTGGCTCTGTAGAACGTGAGAATAATATAAATGGCTTCCATGATCGAAGAAAGTTCACTCATGAAAGATTCATGGAGACCAATTCCAAACTGAAGGATCCAGAAAGTTGCAACTCATCCTTTGATTCCATAACAAGTAGGGTTGAGCAAGTATTTGAGGATGTTGAAGTAGGTGAAAGTGAAATTCCGTGGGAAGACCTGGTTATTGGAGAAAGAATTGGACTTGGTTCATATGGAGAGGTGTACCATGCTGACTGGAATGGCACGGAAGTTGCTGTGAAGAAGTTCCTAGACCAGGATTTCTCGGGTGCTGCTTTGGCTGAGTTCAAAAGAGAAGTACGGATAATGCGTAGGCTGCGCCATCCAAATGTTGTGCTTTTTATGGGTGCTATTACGCGTCCTCCTAACCTCTCTATCATTACAGAGTTCCTTCCAAGGGGAAGTCTATATCGGATTATCCATCGCCCTCATTGTCAAATTGAAGAGAGACGAAGATTAAAGATGGCTCTTGATGTGGCAAGGGGTATGAATTGCTTGCATTCGAGCAACCCCACTATTGTTCACCGGGATTTGAAATCTCCAAATCTATTGGTTGATAAGAACTGGAATGTGAAGGTAGGTGATTTTGGACTGTCGCGCTTGAAACATAACACTTTCTTGTCCTCCAAATCAACTGCTGGAACGCCTGAGTGGATGGCACCAGAAGTTTTGCGCAACGAAAACTCAAATGAAAAGTGTGATGTATATAGCTTTGGAGTAATTTTGTGGGAACTTGCTACTCTAAAATTGCCTTGGAGTGGGATGAACCCGATGCAAGTTGTGGGTGCGGTGGGTTTCCAGAATCGCCGCCTTGACATCCCTAAAGAAGTTGATCCCCCTGTTGCAAGGATAATTTGGCAATGCTGGCACACTGAGCCAAACTCGCGCCCCTCTTTTTCAGAGCTCACGGTAGCTCTCAAGCCCCTGCAACGGCTTGTCACGCCACCAAATATGGACCAGCCCAACTCACCTCTACGACAGGGGATCTCAGTAAATTCTACACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000165 GO:0000186 GO:0001101 GO:0001932 GO:0001934 GO:0002229 GO:0002239 GO:0002831 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005769 GO:0005783 GO:0005794 GO:0005798 GO:0005802 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009787 GO:0009788 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0010648 GO:0012505 GO:0012506 GO:0012510 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0030665 GO:0031090 GO:0031323 GO:0031325 GO:0031347 GO:0031399 GO:0031401 GO:0031410 GO:0031982 GO:0031984 GO:0032101 GO:0032147 GO:0032268 GO:0032270 GO:0033674 GO:0035556 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0043900 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0080134 GO:0097708 GO:0098542 GO:0098588 GO:0098791 GO:0098805 GO:0140096 GO:1900150 GO:1900424 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902531 GO:1902533 GO:1905957 GO:1905958 GO:2000031 GO:2001023 GO:2001038
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EDR1 Pkinase_Tyr

Protein Analysis

920

Amino Acids

101.26

Weight (kDa)

6.13

Isoelectric Point (pI)

49.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR1_CTR1_ARMC3_pept PF14381 143 - 341 1.9e-74 EDR1/CTR1/ARMC3, peptidase-like
PK_Tyr_Ser-Thr PF07714 640 - 889 5.1e-64 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 641 - 887 2.3e-51 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1614
AarI CACCTGC 1 cut(s) 1330
AatII GACGTC 1 cut(s) 86
Acc16I TGCGCA 1 cut(s) 2429
Acc36I ACCTGC 1 cut(s) 1330
Acc65I GGTACC 1 cut(s) 190
AccB1I GGYRCC 4 cut(s) 190, 212, 1318, 2413
AccB7I CCANNNNNTGG 1 cut(s) 1148
AccI GTMKAC 1 cut(s) 666
AccII CGCG 4 cut(s) 428, 2113, 2353, 2641
AccIII TCCGGA 1 cut(s) 331
AcoI YGGCCR 2 cut(s) 379, 423
AcsI RAATTY 5 cut(s) 319, 690, 1291, 1899, 2749
AcuI CTGAAG 3 cut(s) 1469, 1611, 1829
AcyI GRCGYC 1 cut(s) 83
AfaI GTAC 8 cut(s) 192, 534, 699, 819, 1127, 1301, 1961, 2055
AflII CTTAAG 1 cut(s) 914
AflIII ACRYGT 1 cut(s) 2111
AgeI ACCGGT 1 cut(s) 1024
AhdI GACNNNNNGTC 1 cut(s) 249
AjnI CCWGG 4 cut(s) 440, 1009, 1914, 2010
AjuI GAANNNNNNNTTGG 4 cut(s) 558, 590, 1084, 1116
AloI GAACNNNNNNTCC 2 cut(s) 604, 636
Alw21I GWGCWC 3 cut(s) 927, 1534, 2661
Alw26I GTCTC 4 cut(s) 425, 1483, 1787, 2197
Alw44I GTGCAC 2 cut(s) 923, 1530
Ama87I CYCGRG 1 cut(s) 2020
Aor13HI TCCGGA 1 cut(s) 331
AoxI GGCC 5 cut(s) 379, 423, 737, 844, 1473
ApaLI GTGCAC 2 cut(s) 923, 1530
ApeKI GCWGC 4 cut(s) 292, 1161, 2027, 2071
ApoI RAATTY 5 cut(s) 319, 690, 1291, 1899, 2749
AseI ATTAAT 1 cut(s) 954
AsiGI ACCGGT 1 cut(s) 1024
Asp700I GAANNNNTTC 1 cut(s) 2000
Asp718I GGTACC 1 cut(s) 190
AspLEI GCGC 6 cut(s) 125, 301, 2076, 2355, 2430, 2643
AspS9I GGNCC 3 cut(s) 737, 831, 2710
AsuC2I CCSGG 5 cut(s) 47, 127, 140, 247, 2282
AsuII TTCGAA 2 cut(s) 317, 1287
AvaI CYCGRG 1 cut(s) 2020
AvaII GGWCC 2 cut(s) 831, 2710
BaeGI GKGCMC 3 cut(s) 927, 1321, 1534
BamHI GGATCC 1 cut(s) 1813
BanI GGYRCC 4 cut(s) 190, 212, 1318, 2413
BanII GRGCYC 1 cut(s) 2661
BbsI GAAGAC 3 cut(s) 153, 1389, 1917
Bbv12I GWGCWC 3 cut(s) 927, 1534, 2661
BbvI GCAGC 4 cut(s) 304, 1173, 2014, 2058
BceAI ACGGC 3 cut(s) 252, 366, 2702
BcgI CGANNNNNNTGC 2 cut(s) 929, 963
BciT130I CCWGG 4 cut(s) 442, 1011, 1916, 2012
BclI TGATCA 1 cut(s) 394
BcnI CCSGG 5 cut(s) 47, 127, 140, 247, 2282
BcoDI GTCTC 4 cut(s) 425, 1483, 1787, 2197
BfaI CTAG 2 cut(s) 467, 2006
BfmI CTRYAG 2 cut(s) 1323, 1725
BfoI RGCGCY 1 cut(s) 126
BfrI CTTAAG 1 cut(s) 914
BfuAI ACCTGC 1 cut(s) 1330
BglII AGATCT 2 cut(s) 581, 1405
BlpI GCTNAGC 1 cut(s) 365
Bme1390I CCNGG 9 cut(s) 47, 127, 140, 247, 442, 1011, 1916, 2012, 2282
Bme18I GGWCC 2 cut(s) 831, 2710
BmeRI GACNNNNNGTC 1 cut(s) 249
BmeT110I CYCGRG 1 cut(s) 2020
BmgT120I GGNCC 3 cut(s) 737, 831, 2710
BmiI GGNNCC 9 cut(s) 131, 192, 214, 832, 1310, 1320, 1443, 1815, 2415
BmrFI CCNGG 9 cut(s) 47, 127, 140, 247, 442, 1011, 1916, 2012, 2282
BmrI ACTGGG 1 cut(s) 1443
BmsI GCATC 7 cut(s) 351, 406, 739, 809, 888, 900, 2517
BmuI ACTGGG 1 cut(s) 1443
BpiI GAAGAC 3 cut(s) 153, 1389, 1917
BplI GAGNNNNNCTC 4 cut(s) 1240, 1272, 2621, 2653
BpmI CTGGAG 1 cut(s) 1257
Bpu1102I GCTNAGC 1 cut(s) 365
Bpu14I TTCGAA 2 cut(s) 317, 1287
BpuEI CTTGAG 1 cut(s) 2657
BpuMI CCSGG 5 cut(s) 47, 127, 140, 247, 2282
BsaHI GRCGYC 1 cut(s) 83
BsaI GGTCTC 3 cut(s) 425, 1483, 1787
BsaJI CCNNGG 9 cut(s) 138, 426, 519, 574, 627, 1312, 1904, 2150, 2507
BsaWI WCCGGW 2 cut(s) 331, 1024
BsaXI ACNNNNNCTCC 6 cut(s) 266, 296, 422, 452, 2101, 2131
Bse118I RCCGGY 3 cut(s) 178, 193, 1024
Bse1I ACTGG 5 cut(s) 216, 1438, 1672, 1976, 2324
Bse3DI GCAATG 1 cut(s) 2621
BseAI TCCGGA 1 cut(s) 331
BseBI CCWGG 4 cut(s) 442, 1011, 1916, 2012
BseDI CCNNGG 9 cut(s) 138, 426, 519, 574, 627, 1312, 1904, 2150, 2507
BseMI GCAATG 1 cut(s) 2621
BseMII CTCAG 7 cut(s) 356, 1173, 1695, 2028, 2394, 2619, 2757
BseNI ACTGG 5 cut(s) 216, 1438, 1672, 1976, 2324
BseRI GAGGAG 3 cut(s) 290, 293, 1236
BseSI GKGCMC 3 cut(s) 927, 1321, 1534
BseX3I CGGCCG 2 cut(s) 379, 423
BseXI GCAGC 4 cut(s) 304, 1173, 2014, 2058
BsgI GTGCAG 2 cut(s) 311, 1671
Bsh1236I CGCG 4 cut(s) 428, 2113, 2353, 2641
Bsh1285I CGRYCG 5 cut(s) 59, 246, 257, 382, 426
BshFI GGCC 5 cut(s) 381, 425, 739, 846, 1475
BshNI GGYRCC 4 cut(s) 190, 212, 1318, 2413
BshTI ACCGGT 1 cut(s) 1024
BsiEI CGRYCG 5 cut(s) 59, 246, 257, 382, 426
BsiHKAI GWGCWC 3 cut(s) 927, 1534, 2661
BsiHKCI CYCGRG 1 cut(s) 2020
BsiSI CCGG 9 cut(s) 47, 126, 140, 179, 194, 246, 332, 1025, 2281
BslFI GGGAC 3 cut(s) 199, 1226, 1529
BsmAI GTCTC 4 cut(s) 425, 1483, 1787, 2197
BsmBI CGTCTC 1 cut(s) 2197
BsmFI GGGAC 3 cut(s) 199, 1226, 1529
BsmI GAATGC 1 cut(s) 2254
BsnI GGCC 5 cut(s) 381, 425, 739, 846, 1475
Bso31I GGTCTC 3 cut(s) 425, 1483, 1787
BsoBI CYCGRG 1 cut(s) 2020
Bsp119I TTCGAA 2 cut(s) 317, 1287
Bsp1286I GDGCHC 4 cut(s) 927, 1321, 1534, 2661
Bsp13I TCCGGA 1 cut(s) 331
Bsp1720I GCTNAGC 1 cut(s) 365
BspANI GGCC 5 cut(s) 381, 425, 739, 846, 1475
BspCNI CTCAG 7 cut(s) 357, 1174, 1696, 2029, 2395, 2620, 2756
BspEI TCCGGA 1 cut(s) 331
BspFNI CGCG 4 cut(s) 428, 2113, 2353, 2641
BspHI TCATGA 1 cut(s) 1777
BspLI GGNNCC 9 cut(s) 131, 192, 214, 832, 1310, 1320, 1443, 1815, 2415
BspMAI CTGCAG 1 cut(s) 1327
BspMI ACCTGC 1 cut(s) 1330
BspT104I TTCGAA 2 cut(s) 317, 1287
BspT107I GGYRCC 4 cut(s) 190, 212, 1318, 2413
BspTI CTTAAG 1 cut(s) 914
BspTNI GGTCTC 3 cut(s) 425, 1483, 1787
BsrDI GCAATG 1 cut(s) 2621
BsrFI RCCGGY 3 cut(s) 178, 193, 1024
BsrI ACTGG 5 cut(s) 216, 1438, 1672, 1976, 2324
BssAI RCCGGY 3 cut(s) 178, 193, 1024
BssECI CCNNGG 9 cut(s) 138, 426, 519, 574, 627, 1312, 1904, 2150, 2507
BssNI GRCGYC 1 cut(s) 83
BssT1I CCWWGG 4 cut(s) 574, 627, 2150, 2507
Bst2UI CCWGG 4 cut(s) 442, 1011, 1916, 2012
Bst4CI ACNGT 9 cut(s) 96, 116, 190, 654, 1299, 1313, 1394, 2349, 2665
Bst6I CTCTTC 2 cut(s) 627, 2193
BstACI GRCGYC 1 cut(s) 83
BstAFI CTTAAG 1 cut(s) 914
BstBI TTCGAA 2 cut(s) 317, 1287
BstC8I GCNNGC 7 cut(s) 180, 297, 303, 708, 737, 2252, 2621
BstDEI CTNAG 7 cut(s) 365, 1182, 1704, 2037, 2403, 2628, 2743
BstDSI CCRYGG 4 cut(s) 426, 519, 1312, 1904
BstENI CCTNNNNNAGG 2 cut(s) 439, 2009
BstFNI CGCG 4 cut(s) 428, 2113, 2353, 2641
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 6 cut(s) 125, 301, 2076, 2355, 2430, 2643
BstMAI GTCTC 4 cut(s) 425, 1483, 1787, 2197
BstMCI CGRYCG 5 cut(s) 59, 246, 257, 382, 426
BstNI CCWGG 4 cut(s) 442, 1011, 1916, 2012
BstSCI CCNGG 9 cut(s) 45, 125, 138, 245, 440, 1009, 1914, 2010, 2280
BstSFI CTRYAG 2 cut(s) 1323, 1725
BstSLI GKGCMC 3 cut(s) 927, 1321, 1534
BstUI CGCG 4 cut(s) 428, 2113, 2353, 2641
BstV1I GCAGC 4 cut(s) 304, 1173, 2014, 2058
BstV2I GAAGAC 3 cut(s) 153, 1389, 1917
BstX2I RGATCY 6 cut(s) 345, 581, 994, 1405, 1813, 2739
BstYI RGATCY 6 cut(s) 345, 581, 994, 1405, 1813, 2739
BstZI CGGCCG 2 cut(s) 379, 423
BsuRI GGCC 5 cut(s) 381, 425, 739, 846, 1475
BtgI CCRYGG 4 cut(s) 426, 519, 1312, 1904
BtgZI GCGATG 1 cut(s) 2162
BtsIMutI CAGTG 3 cut(s) 316, 659, 2625
BveI ACCTGC 1 cut(s) 1330
Cac8I GCNNGC 7 cut(s) 180, 297, 303, 708, 737, 2252, 2621
CciI TCATGA 1 cut(s) 1777
CciNI GCGGCCGC 1 cut(s) 423
CfoI GCGC 6 cut(s) 125, 301, 2076, 2355, 2430, 2643
Cfr10I RCCGGY 3 cut(s) 178, 193, 1024
Cfr13I GGNCC 3 cut(s) 737, 831, 2710
Cfr42I CCGCGG 1 cut(s) 429
CseI GACGC 1 cut(s) 2102
CsiI ACCWGGT 1 cut(s) 1914
Csp6I GTAC 8 cut(s) 191, 533, 698, 818, 1126, 1300, 1960, 2054
CspAI ACCGGT 1 cut(s) 1024
CspCI CAANNNNNGTGG 2 cut(s) 1651, 1686
CviAII CATG 8 cut(s) 99, 1060, 1148, 1757, 1778, 1789, 1964, 2760
CviQI GTAC 8 cut(s) 191, 533, 698, 818, 1126, 1300, 1960, 2054
DdeI CTNAG 7 cut(s) 365, 1182, 1704, 2037, 2403, 2628, 2743
DriI GACNNNNNGTC 1 cut(s) 249
EaeI YGGCCR 2 cut(s) 379, 423
EagI CGGCCG 2 cut(s) 379, 423
Eam1104I CTCTTC 2 cut(s) 627, 2193
Eam1105I GACNNNNNGTC 1 cut(s) 249
EarI CTCTTC 2 cut(s) 627, 2193
Ecl136II GAGCTC 1 cut(s) 2659
EclXI CGGCCG 2 cut(s) 379, 423
Eco130I CCWWGG 4 cut(s) 574, 627, 2150, 2507
Eco24I GRGCYC 1 cut(s) 2661
Eco31I GGTCTC 3 cut(s) 425, 1483, 1787
Eco47I GGWCC 2 cut(s) 831, 2710
Eco52I CGGCCG 2 cut(s) 379, 423
Eco53kI GAGCTC 1 cut(s) 2659
Eco57I CTGAAG 3 cut(s) 1469, 1611, 1829
Eco88I CYCGRG 1 cut(s) 2020
EcoICRI GAGCTC 1 cut(s) 2659
EcoNI CCTNNNNNAGG 2 cut(s) 439, 2009
EcoRI GAATTC 1 cut(s) 319
EcoRII CCWGG 4 cut(s) 440, 1009, 1914, 2010
EcoT14I CCWWGG 4 cut(s) 574, 627, 2150, 2507
EcoT38I GRGCYC 1 cut(s) 2661
ErhI CCWWGG 4 cut(s) 574, 627, 2150, 2507
Esp3I CGTCTC 1 cut(s) 2197
FaeI CATG 8 cut(s) 102, 1063, 1151, 1760, 1781, 1792, 1967, 2763
FaqI GGGAC 3 cut(s) 199, 1226, 1529
FatI CATG 8 cut(s) 98, 1059, 1147, 1756, 1777, 1788, 1963, 2759
FauI CCCGC 2 cut(s) 175, 728
FauNDI CATATG 3 cut(s) 729, 1363, 1948
FbaI TGATCA 1 cut(s) 394
FblI GTMKAC 1 cut(s) 666
FriOI GRGCYC 1 cut(s) 2661
FspBI CTAG 2 cut(s) 467, 2006
FspI TGCGCA 1 cut(s) 2429
GlaI GCGC 6 cut(s) 124, 300, 2075, 2354, 2429, 2642
GsuI CTGGAG 1 cut(s) 1257
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 5 cut(s) 381, 425, 739, 846, 1475
HapII CCGG 9 cut(s) 47, 126, 140, 179, 194, 246, 332, 1025, 2281
HgaI GACGC 1 cut(s) 2102
HhaI GCGC 6 cut(s) 125, 301, 2076, 2355, 2430, 2643
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 8 cut(s) 102, 1063, 1151, 1760, 1781, 1792, 1967, 2763
Hin6I GCGC 6 cut(s) 123, 299, 2074, 2353, 2428, 2641
HinP1I GCGC 6 cut(s) 123, 299, 2074, 2353, 2428, 2641
HincII GTYRAC 2 cut(s) 81, 1030
HindII GTYRAC 2 cut(s) 81, 1030
HindIII AAGCTT 1 cut(s) 20
HpaII CCGG 9 cut(s) 47, 126, 140, 179, 194, 246, 332, 1025, 2281
Hpy166II GTNNAC 9 cut(s) 81, 667, 925, 1030, 1126, 1532, 1773, 1960, 2278
Hpy8I GTNNAC 9 cut(s) 81, 667, 925, 1030, 1126, 1532, 1773, 1960, 2278
Hpy99I CGWCG 8 cut(s) 172, 175, 178, 238, 244, 361, 387, 479
HpyAV CCTTC 9 cut(s) 99, 331, 558, 1110, 1432, 1549, 1804, 2156, 2323
HpyCH4III ACNGT 9 cut(s) 96, 116, 190, 654, 1299, 1313, 1394, 2349, 2665
HpyCH4IV ACGT 2 cut(s) 83, 1732
HpyF3I CTNAG 7 cut(s) 365, 1182, 1704, 2037, 2403, 2628, 2743
HpySE526I ACGT 2 cut(s) 83, 1732
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 8 cut(s) 102, 1063, 1151, 1760, 1781, 1792, 1967, 2763
HspAI GCGC 6 cut(s) 123, 299, 2074, 2353, 2428, 2641
Kpn2I TCCGGA 1 cut(s) 331
KpnI GGTACC 1 cut(s) 194
KroI GCCGGC 1 cut(s) 178
KroNI GCCGGC 1 cut(s) 180
Ksp22I TGATCA 1 cut(s) 394
KspI CCGCGG 1 cut(s) 429
LmnI GCTCC 3 cut(s) 33, 1447, 1646
Lsp1109I GCAGC 4 cut(s) 304, 1173, 2014, 2058
LweI GCATC 7 cut(s) 351, 406, 739, 809, 888, 900, 2517
MabI ACCWGGT 1 cut(s) 1914
MaeI CTAG 2 cut(s) 467, 2006
MaeII ACGT 2 cut(s) 83, 1732
MaeIII GTNAC 2 cut(s) 84, 2692
MfeI CAATTG 1 cut(s) 813
MflI RGATCY 6 cut(s) 345, 581, 994, 1405, 1813, 2739
MhlI GDGCHC 4 cut(s) 927, 1321, 1534, 2661
MluI ACGCGT 1 cut(s) 2111
MlyI GAGTC 5 cut(s) 98, 233, 259, 1248, 1379
MmeI TCCRAC 4 cut(s) 237, 252, 667, 948
MreI CGCCGGCG 1 cut(s) 178
MroI TCCGGA 1 cut(s) 331
MroNI GCCGGC 1 cut(s) 178
MroXI GAANNNNTTC 1 cut(s) 2000
MseI TTAA 5 cut(s) 915, 954, 1410, 1593, 2213
MslI CAYNNNNRTG 3 cut(s) 97, 896, 2082
MspA1I CMGCKG 1 cut(s) 428
MspCI CTTAAG 1 cut(s) 914
MspI CCGG 9 cut(s) 47, 126, 140, 179, 194, 246, 332, 1025, 2281
MspR9I CCNGG 9 cut(s) 47, 127, 140, 247, 442, 1011, 1916, 2012, 2282
MunI CAATTG 1 cut(s) 813
Mva1269I GAATGC 1 cut(s) 2254
MvaI CCWGG 4 cut(s) 442, 1011, 1916, 2012
MvnI CGCG 4 cut(s) 428, 2113, 2353, 2641
NaeI GCCGGC 1 cut(s) 180
NciI CCSGG 5 cut(s) 47, 127, 140, 247, 2282
NdeI CATATG 3 cut(s) 729, 1363, 1948
NgoMIV GCCGGC 1 cut(s) 178
NlaIII CATG 8 cut(s) 102, 1063, 1151, 1760, 1781, 1792, 1967, 2763
NlaIV GGNNCC 9 cut(s) 131, 192, 214, 832, 1310, 1320, 1443, 1815, 2415
NmuCI GTSAC 2 cut(s) 84, 2692
NotI GCGGCCGC 1 cut(s) 423
NsbI TGCGCA 1 cut(s) 2429
NspV TTCGAA 2 cut(s) 317, 1287
PagI TCATGA 1 cut(s) 1777
PaqCI CACCTGC 1 cut(s) 1330
PcsI WCGNNNNNNNCGW 3 cut(s) 164, 194, 2062
PctI GAATGC 1 cut(s) 2254
PdiI GCCGGC 1 cut(s) 180
PdmI GAANNNNTTC 1 cut(s) 2000
PfeI GAWTC 6 cut(s) 524, 1112, 1193, 1785, 1841, 2557
PflFI GACNNNGTC 1 cut(s) 436
PflMI CCANNNNNTGG 1 cut(s) 1148
PfoI TCCNGGA 1 cut(s) 1009
PinAI ACCGGT 1 cut(s) 1024
Ple19I CGATCG 1 cut(s) 59
PleI GAGTC 5 cut(s) 98, 232, 258, 1247, 1379
PpsI GAGTC 5 cut(s) 98, 232, 258, 1247, 1379
PshBI ATTAAT 1 cut(s) 954
PsiI TTATAA 1 cut(s) 1614
Psp124BI GAGCTC 1 cut(s) 2661
Psp6I CCWGG 4 cut(s) 440, 1009, 1914, 2010
PspGI CCWGG 4 cut(s) 440, 1009, 1914, 2010
PspN4I GGNNCC 9 cut(s) 131, 192, 214, 832, 1310, 1320, 1443, 1815, 2415
PspPI GGNCC 3 cut(s) 737, 831, 2710
PstI CTGCAG 1 cut(s) 1327
PsuI RGATCY 6 cut(s) 345, 581, 994, 1405, 1813, 2739
PsyI GACNNNGTC 1 cut(s) 436
PvuI CGATCG 1 cut(s) 59
RsaI GTAC 8 cut(s) 192, 534, 699, 819, 1127, 1301, 1961, 2055
RsaNI GTAC 8 cut(s) 191, 533, 698, 818, 1126, 1300, 1960, 2054
RseI CAYNNNNRTG 3 cut(s) 97, 896, 2082
SacI GAGCTC 1 cut(s) 2661
SacII CCGCGG 1 cut(s) 429
SaqAI TTAA 5 cut(s) 915, 954, 1410, 1593, 2213
Sau96I GGNCC 3 cut(s) 737, 831, 2710
SchI GAGTC 5 cut(s) 98, 233, 259, 1248, 1379
ScrFI CCNGG 9 cut(s) 47, 127, 140, 247, 442, 1011, 1916, 2012, 2282
SduI GDGCHC 4 cut(s) 927, 1321, 1534, 2661
SexAI ACCWGGT 1 cut(s) 1914
SfaNI GCATC 7 cut(s) 351, 406, 739, 809, 888, 900, 2517
SfcI CTRYAG 2 cut(s) 1323, 1725
Sfr303I CCGCGG 1 cut(s) 429
SfuI TTCGAA 2 cut(s) 317, 1287
SgrAI CRCCGGYG 1 cut(s) 178
SgrBI CCGCGG 1 cut(s) 429
SinI GGWCC 2 cut(s) 831, 2710
SmiMI CAYNNNNRTG 3 cut(s) 97, 896, 2082
SmlI CTYRAG 2 cut(s) 914, 2672
SmoI CTYRAG 2 cut(s) 914, 2672
SspMI CTAG 2 cut(s) 467, 2006
SstI GAGCTC 1 cut(s) 2661
StyD4I CCNGG 9 cut(s) 45, 125, 138, 245, 440, 1009, 1914, 2010, 2280
StyI CCWWGG 4 cut(s) 574, 627, 2150, 2507
TaaI ACNGT 9 cut(s) 96, 116, 190, 654, 1299, 1313, 1394, 2349, 2665
TaiI ACGT 2 cut(s) 86, 1735
TaqII GACCGA 1 cut(s) 243
TatI WGTACW 3 cut(s) 532, 817, 1125
TauI GCSGC 9 cut(s) 53, 356, 378, 381, 422, 425, 428, 1218, 2565
TfiI GAWTC 6 cut(s) 524, 1112, 1193, 1785, 1841, 2557
Tru1I TTAA 5 cut(s) 915, 954, 1410, 1593, 2213
Tru9I TTAA 5 cut(s) 915, 954, 1410, 1593, 2213
TscAI CASTG 3 cut(s) 316, 659, 2632
TseFI GTSAC 2 cut(s) 84, 2692
TseI GCWGC 4 cut(s) 292, 1161, 2027, 2071
Tsp45I GTSAC 2 cut(s) 84, 2692
TspGWI ACGGA 7 cut(s) 216, 338, 536, 1608, 1893, 1997, 2071
TspRI CASTG 3 cut(s) 316, 659, 2632
Tth111I GACNNNGTC 1 cut(s) 436
Van91I CCANNNNNTGG 1 cut(s) 1148
Vha464I CTTAAG 1 cut(s) 914
VneI GTGCAC 2 cut(s) 923, 1530
VpaK11BI GGWCC 2 cut(s) 831, 2710
VspI ATTAAT 1 cut(s) 954
XagI CCTNNNNNAGG 2 cut(s) 439, 2009
XapI RAATTY 5 cut(s) 319, 690, 1291, 1899, 2749
XmiI GTMKAC 1 cut(s) 666
XmnI GAANNNNTTC 1 cut(s) 2000
XspI CTAG 2 cut(s) 467, 2006
ZraI GACGTC 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.