FvH4_4g18220

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0013202
Physical Location & Seq
Forward (+)
22178119 .. 22180984
2866 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g18220.t1

Sequence Viewer

Length: 1698 bp
ATGGCGGGTGCGCGTCTTTGCGCCACCTTCCCTTCTCTCGCACACCCCATCTTACCCGCCATCGCGCCGCCCAAAATTCCGTTATCCGCCTCCGTTTCCCTACCATCCAAACCCACTCGCCGCAAGAACTACTTACGCCCCAAAATTCTCAAAACCCTAAACCCTAAACCCGACCCGAAACCCGCAACCCCTATCCATCCCGAACACCCCATAGCTGAATCTCCGGTAAACCAGTCCCAGGACAGCCACGAGCGAGGCGACGTCGTTTTGGGAGGAGGAGGAGCTGAAGTTGAGGAATTAACGGCGTCGGAGACGACGGCGGAGCTCAGTGGCATTATTGGTAAATTTTCTGCGAGAGATGTGCTAAAATATGGGGGCTATTTTGTTGGGCTGTTTGTGATACAGACTGTTGTGTCTGTTTTGTTATTGGGAGATAGTGATCCTGATGAGGATAGGAAGTCTAAGAGTTTAGGCAAATCGAATTTGAATTCGAGTTCCGGGGATGAAATCGGCAATGTGGTTGGGTTTGATGAGTCTAAATTGGGAGAGAAGATTGAAGAGATTAGAGCAATGGCGAGGAAAGCGCGGAAGATTGAGAAGAATGAGGCCAAGGGAAGTGATGGTGGTGAAGATGATGTGTTTTCGGTGTCGAAGAACAAAATGGGGATTGAAAAGGAGGTTGGGAATAAGTTGGTTAGCTTGCAGAAGAGGTTGGGTAAGAAAAGGGAGAAGCTGCCGGATTCGTTTGTGAATTTTATGGAAATGGCTGCGAGGTTTGAAGATGGGGCGAGGAAGGGTAATGAGAATGGGAAAGAGGGGAATGGGGCGTTGATGTTTAAAAAGAAGCTGAAGTTTAAGACTCCGACTGCTGAGGTGAATAGGGATCCGAAGGGTTTTGGAGGTGAGAAAGAGGATGATGGTGCTGTTAAGAATAAGAGAGGTTCTGGTGGCGTAGATGAAGTTGGGAGAAATGCAAGTGTTGGTATTGATGGTATGGAATTGCTGGAAGCTGAAGGTAAGCAGAATTTGGAGAAAGAAACTGGGAGGTTAGGTGAAGGACATGACAGAGAAGCTGGAGATATGGAACCACAAAATGGTACCATCCACAGGACAATACAAGAGAGGTCATCTTCAGAACATGTAAAATCAATCAAACCAAGAGGATTCGGGAAGAAAAACCCTGCAAGCTTCAAGAAAAAAATTCAGGGAACTACAGTAAAGTCTGATGGTCCTGCTGTGCTGAGTTTGAATAGTGGCTCAAAACAGAAAGAAATCGAAAAACAAGCACTGGCTAACAAAGCCAGCAGCAAGAAATCAAACAATGAAACTGATCCCTGGTGGTTGCATCTTCCTTATGTTCTAGTAATTTTTATGCGTAGAGGTTCTGATGGGCAAGGAGGGCTTTTTAGCATAGAACTCAATTCTCAGTCCCCAAAAGGGAGTGATGCTTCCTACACTGTTGCTTTTGAGGACCGTGGTGATGCCCATAACTTCTGTTTCCTATTGGAATCCTGTTTTGAAGATCAAGATGATTTCACGGCCAATGCTGCTCCTTTACCAAATAAAGAACTTCATAAGGCTATAAAATCAGATGGCATGAAGGTAATTGTTGTAAAGAAGGGGCAGCTTAAGCTGTATGCCGGGCAACCTTTTGCTGAAGTTGAAATTGCTTTGCGCTCTTTGGTCATACAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3110

Protein Analysis

566

Amino Acids

61.24

Weight (kDa)

8.88

Isoelectric Point (pI)

37.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15820
fragaria_vesca FvH4_4g18220
malus_domestica MD13G1168100.v1.1
prunus_persica Prupe.1G135700_v2.0.a1 Prupe.1G135700_v2.0.a1 Prupe.1G135700_v2.0.a1
pyrus_communis pycom13g14390
rosa_chinensis RchiOBHm_Chr4g0422351
rosa_laevigata RLG00000007617
rosa_multiflora Rmu_sc0013245.1_g000011
rosa_roxburghii Rroxscaffold_5G00364460 Rroxscaffold_5G00364470
rosa_rugosa Rorug04G0179300
rosa_samantha Rh4AG238700 Rh4BG242300 Rh4CG253800 Rh4DG237700
rosa_wichuraiana Rw4G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 412
AatII GACGTC 1 cut(s) 264
Acc65I GGTACC 1 cut(s) 1097
AccB1I GGYRCC 1 cut(s) 1097
AccB7I CCANNNNNTGG 1 cut(s) 1094
AccII CGCG 3 cut(s) 13, 65, 586
AciI CCGC 8 cut(s) 5, 57, 68, 87, 121, 183, 320, 586
AclWI GGATC 4 cut(s) 434, 878, 891, 1325
AcoI YGGCCR 1 cut(s) 1539
AcsI RAATTY 8 cut(s) 75, 144, 344, 481, 487, 751, 1024, 1200
AcuI CTGAAG 5 cut(s) 306, 869, 1032, 1116, 1677
AcyI GRCGYC 2 cut(s) 261, 305
AfaI GTAC 1 cut(s) 1099
AfiI CCNNNNNNNGG 4 cut(s) 238, 1094, 1107, 1437
AflII CTTAAG 1 cut(s) 1628
AflIII ACRYGT 1 cut(s) 1138
AgsI TTSAA 8 cut(s) 487, 557, 671, 779, 1192, 1249, 1520, 1664
AjnI CCWGG 2 cut(s) 237, 1334
AjuI GAANNNNNNNTTGG 2 cut(s) 663, 695
Alw21I GWGCWC 1 cut(s) 327
Alw26I GTCTC 1 cut(s) 305
AlwI GGATC 4 cut(s) 434, 878, 891, 1325
AoxI GGCC 2 cut(s) 606, 1539
ApeKI GCWGC 5 cut(s) 733, 767, 1305, 1547, 1624
ApoI RAATTY 8 cut(s) 75, 144, 344, 481, 487, 751, 1024, 1200
Asp718I GGTACC 1 cut(s) 1097
AspLEI GCGC 5 cut(s) 13, 23, 67, 586, 1677
AspS9I GGNCC 2 cut(s) 1229, 1471
AsuC2I CCSGG 2 cut(s) 499, 1642
AsuHPI GGTGA 5 cut(s) 638, 886, 914, 1064, 1490
AvaII GGWCC 2 cut(s) 1229, 1471
BamHI GGATCC 1 cut(s) 883
BanI GGYRCC 1 cut(s) 1097
BanII GRGCYC 1 cut(s) 327
BauI CACGAG 1 cut(s) 248
Bbv12I GWGCWC 1 cut(s) 327
BbvCI CCTCAGC 1 cut(s) 870
BbvI GCAGC 5 cut(s) 720, 754, 1317, 1534, 1636
BceAI ACGGC 3 cut(s) 318, 333, 1554
BcgI CGANNNNNNTGC 2 cut(s) 343, 377
BciT130I CCWGG 2 cut(s) 239, 1336
BcnI CCSGG 2 cut(s) 499, 1642
BcoDI GTCTC 1 cut(s) 305
BfaI CTAG 1 cut(s) 1361
BfmI CTRYAG 1 cut(s) 1212
BfrI CTTAAG 1 cut(s) 1628
BisI GCNGC 7 cut(s) 68, 121, 734, 768, 1306, 1548, 1625
BlsI GCNGC 7 cut(s) 69, 122, 735, 769, 1307, 1549, 1626
Bme1390I CCNGG 4 cut(s) 239, 499, 1336, 1642
Bme18I GGWCC 2 cut(s) 1229, 1471
BmgT120I GGNCC 2 cut(s) 1229, 1471
BmiI GGNNCC 3 cut(s) 885, 1086, 1099
BmrFI CCNGG 4 cut(s) 239, 499, 1336, 1642
BmrI ACTGGG 1 cut(s) 1050
BmsI GCATC 3 cut(s) 1354, 1435, 1471
BmuI ACTGGG 1 cut(s) 1050
BpmI CTGGAG 1 cut(s) 1095
Bpu10I CCTNAGC 1 cut(s) 870
BpuMI CCSGG 2 cut(s) 499, 1642
BsaBI GATNNNNATC 1 cut(s) 438
BsaHI GRCGYC 2 cut(s) 261, 305
BsaJI CCNNGG 5 cut(s) 237, 498, 609, 1334, 1474
BsaWI WCCGGW 1 cut(s) 223
BsaXI ACNNNNNCTCC 4 cut(s) 273, 303, 1036, 1066
Bsc4I CCNNNNNNNGG 4 cut(s) 238, 1094, 1107, 1437
Bse1I ACTGG 3 cut(s) 232, 1045, 1293
Bse3DI GCAATG 2 cut(s) 520, 576
Bse8I GATNNNNATC 1 cut(s) 438
BseBI CCWGG 2 cut(s) 239, 1336
BseDI CCNNGG 5 cut(s) 237, 498, 609, 1334, 1474
BseGI GGATG 5 cut(s) 104, 196, 508, 919, 1101
BseJI GATNNNNATC 1 cut(s) 438
BseLI CCNNNNNNNGG 4 cut(s) 238, 1094, 1107, 1437
BseMI GCAATG 2 cut(s) 520, 576
BseMII CTCAG 4 cut(s) 340, 861, 1232, 1439
BseNI ACTGG 3 cut(s) 232, 1045, 1293
BseRI GAGGAG 3 cut(s) 288, 291, 294
BseXI GCAGC 5 cut(s) 720, 754, 1317, 1534, 1636
Bsh1236I CGCG 3 cut(s) 13, 65, 586
BshFI GGCC 2 cut(s) 608, 1541
BshNI GGYRCC 1 cut(s) 1097
BsiHKAI GWGCWC 1 cut(s) 327
BsiSI CCGG 4 cut(s) 224, 498, 737, 1641
BslFI GGGAC 2 cut(s) 220, 1414
BslI CCNNNNNNNGG 4 cut(s) 238, 1094, 1107, 1437
BsmAI GTCTC 1 cut(s) 305
BsmBI CGTCTC 1 cut(s) 305
BsmFI GGGAC 2 cut(s) 220, 1414
BsnI GGCC 2 cut(s) 608, 1541
Bsp1286I GDGCHC 1 cut(s) 327
Bsp143I GATC 4 cut(s) 439, 883, 1330, 1522
BspACI CCGC 8 cut(s) 5, 57, 68, 87, 121, 183, 320, 586
BspANI GGCC 2 cut(s) 608, 1541
BspCNI CTCAG 4 cut(s) 339, 862, 1233, 1438
BspFNI CGCG 3 cut(s) 13, 65, 586
BspLI GGNNCC 3 cut(s) 885, 1086, 1099
BspPI GGATC 4 cut(s) 434, 878, 891, 1325
BspT107I GGYRCC 1 cut(s) 1097
BspTI CTTAAG 1 cut(s) 1628
BsrDI GCAATG 2 cut(s) 520, 576
BsrI ACTGG 3 cut(s) 232, 1045, 1293
BssECI CCNNGG 5 cut(s) 237, 498, 609, 1334, 1474
BssMI GATC 4 cut(s) 439, 883, 1330, 1522
BssNI GRCGYC 2 cut(s) 261, 305
BssSI CACGAG 1 cut(s) 248
BssT1I CCWWGG 1 cut(s) 609
Bst2BI CACGAG 1 cut(s) 248
Bst2UI CCWGG 2 cut(s) 239, 1336
Bst4CI ACNGT 4 cut(s) 409, 1216, 1459, 1475
Bst6I CTCTTC 2 cut(s) 552, 701
BstACI GRCGYC 2 cut(s) 261, 305
BstAFI CTTAAG 1 cut(s) 1628
BstC8I GCNNGC 3 cut(s) 701, 1186, 1303
BstDEI CTNAG 5 cut(s) 326, 462, 870, 1241, 1425
BstDSI CCRYGG 1 cut(s) 1474
BstF5I GGATG 5 cut(s) 104, 196, 508, 919, 1101
BstFNI CGCG 3 cut(s) 13, 65, 586
BstHHI GCGC 5 cut(s) 13, 23, 67, 586, 1677
BstKTI GATC 4 cut(s) 442, 886, 1333, 1525
BstMAI GTCTC 1 cut(s) 305
BstMBI GATC 4 cut(s) 439, 883, 1330, 1522
BstMWI GCNNNNNNNGC 5 cut(s) 581, 1298, 1399, 1547, 1630
BstNI CCWGG 2 cut(s) 239, 1336
BstNSI RCATGY 1 cut(s) 1142
BstSCI CCNGG 4 cut(s) 237, 497, 1334, 1640
BstSFI CTRYAG 1 cut(s) 1212
BstUI CGCG 3 cut(s) 13, 65, 586
BstV1I GCAGC 5 cut(s) 720, 754, 1317, 1534, 1636
BstX2I RGATCY 1 cut(s) 883
BstYI RGATCY 1 cut(s) 883
BsuRI GGCC 2 cut(s) 608, 1541
BtgI CCRYGG 1 cut(s) 1474
BtgZI GCGATG 1 cut(s) 46
BtsCI GGATG 5 cut(s) 104, 196, 508, 919, 1101
BtsIMutI CAGTG 3 cut(s) 334, 1286, 1455
Cac8I GCNNGC 3 cut(s) 701, 1186, 1303
CfoI GCGC 5 cut(s) 13, 23, 67, 586, 1677
Cfr13I GGNCC 2 cut(s) 1229, 1471
CseI GACGC 2 cut(s) 2, 294
Csp6I GTAC 1 cut(s) 1098
CviAII CATG 3 cut(s) 1061, 1139, 1597
CviQI GTAC 1 cut(s) 1098
DdeI CTNAG 5 cut(s) 326, 462, 870, 1241, 1425
DpnI GATC 4 cut(s) 441, 885, 1332, 1524
DpnII GATC 4 cut(s) 439, 883, 1330, 1522
DraI TTTAAA 1 cut(s) 838
DrdI GACNNNNNNGTC 1 cut(s) 412
DseDI GACNNNNNNGTC 1 cut(s) 412
EaeI YGGCCR 1 cut(s) 1539
Eam1104I CTCTTC 2 cut(s) 552, 701
EarI CTCTTC 2 cut(s) 552, 701
EciI GGCGGA 2 cut(s) 76, 335
Ecl136II GAGCTC 1 cut(s) 325
Eco130I CCWWGG 1 cut(s) 609
Eco24I GRGCYC 1 cut(s) 327
Eco47I GGWCC 2 cut(s) 1229, 1471
Eco53kI GAGCTC 1 cut(s) 325
Eco57I CTGAAG 5 cut(s) 306, 869, 1032, 1116, 1677
EcoICRI GAGCTC 1 cut(s) 325
EcoRI GAATTC 1 cut(s) 487
EcoRII CCWGG 2 cut(s) 237, 1334
EcoT14I CCWWGG 1 cut(s) 609
EcoT38I GRGCYC 1 cut(s) 327
ErhI CCWWGG 1 cut(s) 609
Esp3I CGTCTC 1 cut(s) 305
FaeI CATG 3 cut(s) 1064, 1142, 1600
FalI AAGNNNNNCTT 4 cut(s) 116, 148, 1386, 1418
FaqI GGGAC 2 cut(s) 220, 1414
FatI CATG 3 cut(s) 1060, 1138, 1596
FauI CCCGC 2 cut(s) 64, 190
Fnu4HI GCNGC 7 cut(s) 68, 121, 734, 768, 1306, 1548, 1625
FokI GGATG 5 cut(s) 91, 183, 515, 926, 1088
FriOI GRGCYC 1 cut(s) 327
Fsp4HI GCNGC 7 cut(s) 68, 121, 734, 768, 1306, 1548, 1625
FspBI CTAG 1 cut(s) 1361
GlaI GCGC 5 cut(s) 12, 22, 66, 585, 1676
GluI GCNGC 7 cut(s) 68, 121, 734, 768, 1306, 1548, 1625
GsuI CTGGAG 1 cut(s) 1095
HaeIII GGCC 2 cut(s) 608, 1541
HapII CCGG 4 cut(s) 224, 498, 737, 1641
HgaI GACGC 2 cut(s) 2, 294
HhaI GCGC 5 cut(s) 13, 23, 67, 586, 1677
Hin1I GRCGYC 2 cut(s) 261, 305
Hin1II CATG 3 cut(s) 1064, 1142, 1600
Hin6I GCGC 5 cut(s) 11, 21, 65, 584, 1675
HinP1I GCGC 5 cut(s) 11, 21, 65, 584, 1675
HindIII AAGCTT 1 cut(s) 1186
HinfI GANTC 6 cut(s) 218, 533, 740, 859, 1164, 1508
HpaII CCGG 4 cut(s) 224, 498, 737, 1641
HphI GGTGA 5 cut(s) 638, 886, 914, 1064, 1490
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 7 cut(s) 310, 864, 888, 1135, 1225, 1387, 1591
Hpy188III TCNNGA 5 cut(s) 200, 443, 1168, 1192, 1526
Hpy8I GTNNAC 1 cut(s) 229
Hpy99I CGWCG 4 cut(s) 263, 266, 310, 319
HpyAV CCTTC 8 cut(s) 37, 42, 787, 883, 1007, 1049, 1594, 1612
HpyCH4III ACNGT 4 cut(s) 409, 1216, 1459, 1475
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 4 cut(s) 703, 974, 1184, 1345
HpyF10VI GCNNNNNNNGC 5 cut(s) 581, 1298, 1399, 1547, 1630
HpyF3I CTNAG 5 cut(s) 326, 462, 870, 1241, 1425
HpySE526I ACGT 1 cut(s) 261
Hsp92I GRCGYC 2 cut(s) 261, 305
Hsp92II CATG 3 cut(s) 1064, 1142, 1600
HspAI GCGC 5 cut(s) 11, 21, 65, 584, 1675
KpnI GGTACC 1 cut(s) 1101
Kzo9I GATC 4 cut(s) 439, 883, 1330, 1522
LmnI GCTCC 3 cut(s) 281, 322, 1555
Lsp1109I GCAGC 5 cut(s) 720, 754, 1317, 1534, 1636
LweI GCATC 3 cut(s) 1354, 1435, 1471
MaeI CTAG 1 cut(s) 1361
MaeII ACGT 1 cut(s) 261
MalI GATC 4 cut(s) 441, 885, 1332, 1524
MboI GATC 4 cut(s) 439, 883, 1330, 1522
MflI RGATCY 1 cut(s) 883
MhlI GDGCHC 1 cut(s) 327
MlyI GAGTC 2 cut(s) 542, 853
MmeI TCCRAC 2 cut(s) 288, 887
MseI TTAA 5 cut(s) 299, 837, 855, 927, 1629
MspCI CTTAAG 1 cut(s) 1628
MspI CCGG 4 cut(s) 224, 498, 737, 1641
MspR9I CCNGG 4 cut(s) 239, 499, 1336, 1642
MvaI CCWGG 2 cut(s) 239, 1336
MvnI CGCG 3 cut(s) 13, 65, 586
MwoI GCNNNNNNNGC 5 cut(s) 581, 1298, 1399, 1547, 1630
NciI CCSGG 2 cut(s) 499, 1642
NdeII GATC 4 cut(s) 439, 883, 1330, 1522
NlaIII CATG 3 cut(s) 1064, 1142, 1600
NlaIV GGNNCC 3 cut(s) 885, 1086, 1099
NspI RCATGY 1 cut(s) 1142
PciI ACATGT 1 cut(s) 1138
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PfeI GAWTC 4 cut(s) 218, 740, 1164, 1508
PflMI CCANNNNNTGG 1 cut(s) 1094
PkrI GCNGC 7 cut(s) 69, 122, 735, 769, 1307, 1549, 1626
PleI GAGTC 2 cut(s) 541, 853
PpsI GAGTC 2 cut(s) 541, 853
PscI ACATGT 1 cut(s) 1138
Psp124BI GAGCTC 1 cut(s) 327
Psp6I CCWGG 2 cut(s) 237, 1334
PspGI CCWGG 2 cut(s) 237, 1334
PspN4I GGNNCC 3 cut(s) 885, 1086, 1099
PspPI GGNCC 2 cut(s) 1229, 1471
PsuI RGATCY 1 cut(s) 883
RsaI GTAC 1 cut(s) 1099
RsaNI GTAC 1 cut(s) 1098
SacI GAGCTC 1 cut(s) 327
SaqAI TTAA 5 cut(s) 299, 837, 855, 927, 1629
SatI GCNGC 7 cut(s) 68, 121, 734, 768, 1306, 1548, 1625
Sau3AI GATC 4 cut(s) 439, 883, 1330, 1522
Sau96I GGNCC 2 cut(s) 1229, 1471
SchI GAGTC 2 cut(s) 542, 853
ScrFI CCNGG 4 cut(s) 239, 499, 1336, 1642
SduI GDGCHC 1 cut(s) 327
SfaNI GCATC 3 cut(s) 1354, 1435, 1471
SfcI CTRYAG 1 cut(s) 1212
SinI GGWCC 2 cut(s) 1229, 1471
SmlI CTYRAG 1 cut(s) 1628
SmoI CTYRAG 1 cut(s) 1628
SsiI CCGC 8 cut(s) 5, 57, 68, 87, 121, 183, 320, 586
SspMI CTAG 1 cut(s) 1361
SstI GAGCTC 1 cut(s) 327
StyD4I CCNGG 4 cut(s) 237, 497, 1334, 1640
StyI CCWWGG 1 cut(s) 609
TaaI ACNGT 4 cut(s) 409, 1216, 1459, 1475
TaiI ACGT 1 cut(s) 264
TaqI TCGA 4 cut(s) 479, 491, 650, 1275
TauI GCSGC 2 cut(s) 70, 123
TfiI GAWTC 4 cut(s) 218, 740, 1164, 1508
Tru1I TTAA 5 cut(s) 299, 837, 855, 927, 1629
Tru9I TTAA 5 cut(s) 299, 837, 855, 927, 1629
TscAI CASTG 3 cut(s) 334, 1293, 1462
TseI GCWGC 5 cut(s) 733, 767, 1305, 1547, 1624
TspDTI ATGAA 5 cut(s) 519, 972, 1338, 1562, 1613
TspGWI ACGGA 2 cut(s) 69, 82
TspRI CASTG 3 cut(s) 334, 1293, 1462
Van91I CCANNNNNTGG 1 cut(s) 1094
Vha464I CTTAAG 1 cut(s) 1628
VpaK11BI GGWCC 2 cut(s) 1229, 1471
XapI RAATTY 8 cut(s) 75, 144, 344, 481, 487, 751, 1024, 1200
XceI RCATGY 1 cut(s) 1142
XspI CTAG 1 cut(s) 1361
ZraI GACGTC 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.