Rh4BG242300

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0013202
Physical Location & Seq
Forward (+)
40854423 .. 40857146
2724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG242300.1

Sequence Viewer

Length: 1731 bp
ATGGCGGGTGCGCGTGTTTGCGCCACCTTCCCCAATCTCGCACACCCAATCTTACCCGCCACCACCCCGCCCAAAATTCCGGTATCAGCCTCCGTTTCCGTACCGTCAAAAATCACTCGCCGGAAGAACTATTTGCGCCCCAAAATTCTCAAAACCCTAAACCCTAAACCCGACCCGCAACCCGCACAGCCCGTAGTTCCCGTCGAATCTCCAGTAACCCCATCCCAAGACAACCATGAACTCGAGCATAGCTCCGACCGAGGCGACGTCGTTTTGGGAGGAGGAGGAGGAGGAGGAGCTGAAGTCGAAGAATTAAGAGTGTCTGAGACGACGGCGGAGCTCATTGGCATTTCTGGTAAATTTTCTGCGAGGACTGTGCTAAAATATGGGGGTTATTTTATTGGGCTTTTTGTGCTACAGACTGTTGTTTCTGTTTTGTTATTGGGAGATAGTGATCCTGATGAAAATAGCAAGTCTAGGAGTTCAGTATCAGGCAAATCCAATTTGAAGACGAGTTCTGGGTCTGAATTGGGCAATGTGGTTCGGTTTGATGAGTCCCAATTGGGAGAGAAAATTGAAGAGATTAGGGCAATGGCAAGGAAAGCGCGAAAGATTGAGAAGAATGAGTCGAAGGGAAGTATTGGAAATGAGGATGATGCATTTTCGAAGTCTAAGAATAAGATTGGGATTGAAAAGGAGGTTGGGAACCGGTTGGTTAACTTGCAGAAGAGGTTGGGTTCCAAAAGGGAGAAGTTGCCGGGTTCGTTTGTGAATTATCTGGAAATGTTTGGGAAGTTTGAAGATGGGGTGAGGAAGAATAATGAGAATGTGAAGGAGGGGGATGAGGCATTGATGTTTAAGAAGAAGCTGAAGTTTAAGACTCCTACTGCTGAGGTGAATAGGAATCCGAAGGGTTTTGGAGGTGTCAAAGAGGAAGGTGGTTCTAGTAAGAGTCAGAGAGGTTCAGGTGGTGTAGATGAAATTGGGAGAAATGCAAGTGTTGGTACTGATGGTATGGAATTGCGGGAAGCTGATGATAAGGAGAAGCCGCGAGAGACTTTGGAGAAAGGAACAGGGAGATTAGATGAAGGACAGGACAGAGAAGCTGGAAATATGGAACCGCAGAATGGTACTGTCCACAGGATTATACAAGGGAGGTCATCTGCTGAAGATGTAGAGTCAATCAAACCAAGAGGCTTCGGGAAGAAAAACCCTGAAAGCTTGAAGAAAGAAATTCAGGGAAGGACAGTAGAATCAGATGGTCCTACTGTGCAGAGTGTGAATAGCGGTTCAACACAGAAAAAAGCCAAAAAACAAGCACTGGCTAACAAAGTCAGTAGTAAGCAGTCAGACAATGAGACTGATCCATGGTGGTTGCATCTTCCTTATGTTCTAGTTATTTTTATGCGTAGAGGTTCTGATGGGCAAGGAGGGCTTTTTAACATAGAGCTCAATTCTCAGTCCCAAAACGAGAGTGATGCTTCCTATACTGTTGCTTTTGAGGACCGAGGTGATGCCAATAACTTCTGTTTCCTATTGGAGTCTTGTTTTGAAGATCAAGATGATTTCAGGGCCACTGCTGCTCCCTTACCAAATAAAGAACTTCATAAAGCAGTAAAATCAGATGACATGAAGGTAATTGTTGTGAAGAAGGGGCAGCTTCAGCTGTATGCTGGGCAGCCTTTTGCTGAAGTTGAAATGGCTTTGCGCTCTTTAGTTTTACAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3110

Protein Analysis

576

Amino Acids

62.77

Weight (kDa)

8.58

Isoelectric Point (pI)

44.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15820
fragaria_vesca FvH4_4g18220
malus_domestica MD13G1168100.v1.1
prunus_persica Prupe.1G135700_v2.0.a1 Prupe.1G135700_v2.0.a1 Prupe.1G135700_v2.0.a1
pyrus_communis pycom13g14390
rosa_chinensis RchiOBHm_Chr4g0422351
rosa_laevigata RLG00000007617
rosa_multiflora Rmu_sc0013245.1_g000011
rosa_roxburghii Rroxscaffold_5G00364460 Rroxscaffold_5G00364470
rosa_rugosa Rorug04G0179300
rosa_samantha Rh4AG238700 Rh4BG242300 Rh4CG253800 Rh4DG237700
rosa_wichuraiana Rw4G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 270
AccII CGCG 3 cut(s) 13, 607, 1051
AclWI GGATC 2 cut(s) 449, 1358
AcsI RAATTY 4 cut(s) 75, 144, 359, 1233
AcuI CTGAAG 5 cut(s) 321, 890, 1188, 1646, 1710
AcyI GRCGYC 1 cut(s) 267
AfaI GTAC 3 cut(s) 102, 1006, 1132
AfiI CCNNNNNNNGG 1 cut(s) 1127
AgeI ACCGGT 1 cut(s) 708
AgsI TTSAA 8 cut(s) 508, 578, 692, 800, 1225, 1293, 1553, 1697
AjuI GAANNNNNNNTTGG 2 cut(s) 684, 716
Alw21I GWGCWC 2 cut(s) 342, 1452
Alw26I GTCTC 3 cut(s) 320, 1049, 1352
AlwI GGATC 2 cut(s) 449, 1358
Ama87I CYCGRG 1 cut(s) 242
AoxI GGCC 1 cut(s) 1572
ApeKI GCWGC 3 cut(s) 1580, 1657, 1678
ApoI RAATTY 4 cut(s) 75, 144, 359, 1233
AsiGI ACCGGT 1 cut(s) 708
AspLEI GCGC 5 cut(s) 13, 23, 138, 607, 1710
AspS9I GGNCC 3 cut(s) 1262, 1504, 1572
AsuC2I CCSGG 1 cut(s) 759
AsuHPI GGTGA 3 cut(s) 820, 907, 1523
AsuII TTCGAA 1 cut(s) 665
AvaI CYCGRG 1 cut(s) 242
AvaII GGWCC 2 cut(s) 1262, 1504
BanII GRGCYC 2 cut(s) 342, 1452
BbsI GAAGAC 1 cut(s) 515
Bbv12I GWGCWC 2 cut(s) 342, 1452
BbvCI CCTCAGC 1 cut(s) 891
BbvI GCAGC 3 cut(s) 1567, 1669, 1690
BccI CCATC 5 cut(s) 229, 797, 1004, 1253, 1415
BceAI ACGGC 1 cut(s) 348
BcgI CGANNNNNNTGC 4 cut(s) 358, 392, 1460, 1494
BcnI CCSGG 1 cut(s) 759
BcoDI GTCTC 3 cut(s) 320, 1049, 1352
BfaI CTAG 3 cut(s) 477, 945, 1394
BfmI CTRYAG 1 cut(s) 416
BisI GCNGC 4 cut(s) 1049, 1581, 1658, 1679
BlsI GCNGC 4 cut(s) 1050, 1582, 1659, 1680
Bme1390I CCNGG 1 cut(s) 759
Bme18I GGWCC 2 cut(s) 1262, 1504
BmeT110I CYCGRG 1 cut(s) 242
BmgT120I GGNCC 3 cut(s) 1262, 1504, 1572
BmiI GGNNCC 3 cut(s) 707, 739, 1119
BmrFI CCNGG 1 cut(s) 759
BmsI GCATC 4 cut(s) 646, 1387, 1468, 1504
BpiI GAAGAC 1 cut(s) 515
BplI GAGNNNNNCTC 2 cut(s) 236, 268
BpmI CTGGAG 1 cut(s) 195
Bpu10I CCTNAGC 1 cut(s) 891
Bpu14I TTCGAA 1 cut(s) 665
BpuMI CCSGG 1 cut(s) 759
BsaBI GATNNNNATC 1 cut(s) 453
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 3 cut(s) 259, 1367, 1507
BsaWI WCCGGW 2 cut(s) 79, 708
BsaXI ACNNNNNCTCC 4 cut(s) 288, 318, 1567, 1597
Bsc4I CCNNNNNNNGG 1 cut(s) 1127
Bse118I RCCGGY 1 cut(s) 708
Bse1I ACTGG 2 cut(s) 212, 1326
Bse3DI GCAATG 2 cut(s) 541, 597
Bse8I GATNNNNATC 1 cut(s) 453
BseDI CCNNGG 3 cut(s) 259, 1367, 1507
BseGI GGATG 3 cut(s) 221, 658, 847
BseJI GATNNNNATC 1 cut(s) 453
BseLI CCNNNNNNNGG 1 cut(s) 1127
BseMI GCAATG 2 cut(s) 541, 597
BseMII CTCAG 3 cut(s) 315, 882, 1472
BseNI ACTGG 2 cut(s) 212, 1326
BseRI GAGGAG 6 cut(s) 294, 297, 300, 303, 306, 309
BseXI GCAGC 3 cut(s) 1567, 1669, 1690
BseYI CCCAGC 1 cut(s) 1673
BsgI GTGCAG 1 cut(s) 1292
Bsh1236I CGCG 3 cut(s) 13, 607, 1051
Bsh1285I CGRYCG 1 cut(s) 259
BshFI GGCC 1 cut(s) 1574
BshTI ACCGGT 1 cut(s) 708
BsiEI CGRYCG 1 cut(s) 259
BsiHKAI GWGCWC 2 cut(s) 342, 1452
BsiHKCI CYCGRG 1 cut(s) 242
BsiSI CCGG 4 cut(s) 80, 121, 709, 758
BslFI GGGAC 2 cut(s) 541, 1447
BslI CCNNNNNNNGG 1 cut(s) 1127
BsmAI GTCTC 3 cut(s) 320, 1049, 1352
BsmBI CGTCTC 1 cut(s) 320
BsmFI GGGAC 2 cut(s) 541, 1447
BsnI GGCC 1 cut(s) 1574
BsoBI CYCGRG 1 cut(s) 242
Bsp119I TTCGAA 1 cut(s) 665
Bsp1286I GDGCHC 2 cut(s) 342, 1452
Bsp143I GATC 3 cut(s) 454, 1363, 1555
Bsp19I CCATGG 1 cut(s) 1367
BspANI GGCC 1 cut(s) 1574
BspCNI CTCAG 3 cut(s) 316, 883, 1471
BspFNI CGCG 3 cut(s) 13, 607, 1051
BspLI GGNNCC 3 cut(s) 707, 739, 1119
BspPI GGATC 2 cut(s) 449, 1358
BspT104I TTCGAA 1 cut(s) 665
BsrDI GCAATG 2 cut(s) 541, 597
BsrFI RCCGGY 1 cut(s) 708
BsrI ACTGG 2 cut(s) 212, 1326
BssAI RCCGGY 1 cut(s) 708
BssECI CCNNGG 3 cut(s) 259, 1367, 1507
BssMI GATC 3 cut(s) 454, 1363, 1555
BssNI GRCGYC 1 cut(s) 267
BssT1I CCWWGG 1 cut(s) 1367
Bst4CI ACNGT 7 cut(s) 105, 376, 424, 1135, 1249, 1270, 1492
Bst6I CTCTTC 2 cut(s) 573, 722
BstACI GRCGYC 1 cut(s) 267
BstBI TTCGAA 1 cut(s) 665
BstDEI CTNAG 4 cut(s) 324, 672, 891, 1458
BstDSI CCRYGG 1 cut(s) 1367
BstF5I GGATG 3 cut(s) 221, 658, 847
BstFNI CGCG 3 cut(s) 13, 607, 1051
BstHHI GCGC 5 cut(s) 13, 23, 138, 607, 1710
BstKTI GATC 3 cut(s) 457, 1366, 1558
BstMAI GTCTC 3 cut(s) 320, 1049, 1352
BstMBI GATC 3 cut(s) 454, 1363, 1555
BstMCI CGRYCG 1 cut(s) 259
BstMWI GCNNNNNNNGC 5 cut(s) 412, 602, 1432, 1580, 1663
BstSCI CCNGG 1 cut(s) 757
BstSFI CTRYAG 1 cut(s) 416
BstUI CGCG 3 cut(s) 13, 607, 1051
BstV1I GCAGC 3 cut(s) 1567, 1669, 1690
BstV2I GAAGAC 1 cut(s) 515
BsuRI GGCC 1 cut(s) 1574
BtgI CCRYGG 1 cut(s) 1367
BtsCI GGATG 3 cut(s) 221, 658, 847
BtsI GCAGTG 1 cut(s) 1575
BtsIMutI CAGTG 2 cut(s) 1319, 1575
CfoI GCGC 5 cut(s) 13, 23, 138, 607, 1710
Cfr10I RCCGGY 1 cut(s) 708
Cfr13I GGNCC 3 cut(s) 1262, 1504, 1572
Csp6I GTAC 3 cut(s) 101, 1005, 1131
CspAI ACCGGT 1 cut(s) 708
CviAII CATG 3 cut(s) 236, 1368, 1630
CviQI GTAC 3 cut(s) 101, 1005, 1131
DdeI CTNAG 4 cut(s) 324, 672, 891, 1458
DpnI GATC 3 cut(s) 456, 1365, 1557
DpnII GATC 3 cut(s) 454, 1363, 1555
Eam1104I CTCTTC 2 cut(s) 573, 722
EarI CTCTTC 2 cut(s) 573, 722
EciI GGCGGA 1 cut(s) 350
Ecl136II GAGCTC 2 cut(s) 340, 1450
Eco130I CCWWGG 1 cut(s) 1367
Eco24I GRGCYC 2 cut(s) 342, 1452
Eco47I GGWCC 2 cut(s) 1262, 1504
Eco53kI GAGCTC 2 cut(s) 340, 1450
Eco57I CTGAAG 5 cut(s) 321, 890, 1188, 1646, 1710
Eco88I CYCGRG 1 cut(s) 242
EcoICRI GAGCTC 2 cut(s) 340, 1450
EcoT14I CCWWGG 1 cut(s) 1367
EcoT22I ATGCAT 1 cut(s) 661
EcoT38I GRGCYC 2 cut(s) 342, 1452
ErhI CCWWGG 1 cut(s) 1367
Esp3I CGTCTC 1 cut(s) 320
FaeI CATG 3 cut(s) 239, 1371, 1633
FalI AAGNNNNNCTT 2 cut(s) 1419, 1451
FaqI GGGAC 2 cut(s) 541, 1447
FatI CATG 3 cut(s) 235, 1367, 1629
FauI CCCGC 5 cut(s) 64, 75, 183, 190, 1017
Fnu4HI GCNGC 4 cut(s) 1049, 1581, 1658, 1679
FokI GGATG 3 cut(s) 208, 665, 854
FriOI GRGCYC 2 cut(s) 342, 1452
Fsp4HI GCNGC 4 cut(s) 1049, 1581, 1658, 1679
FspBI CTAG 3 cut(s) 477, 945, 1394
GlaI GCGC 5 cut(s) 12, 22, 137, 606, 1709
GluI GCNGC 4 cut(s) 1049, 1581, 1658, 1679
GsaI CCCAGC 1 cut(s) 1677
GsuI CTGGAG 1 cut(s) 195
HaeIII GGCC 1 cut(s) 1574
HapII CCGG 4 cut(s) 80, 121, 709, 758
HhaI GCGC 5 cut(s) 13, 23, 138, 607, 1710
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 3 cut(s) 239, 1371, 1633
Hin6I GCGC 5 cut(s) 11, 21, 136, 605, 1708
HinP1I GCGC 5 cut(s) 11, 21, 136, 605, 1708
HincII GTYRAC 1 cut(s) 718
HindII GTYRAC 1 cut(s) 718
HindIII AAGCTT 1 cut(s) 1219
HinfI GANTC 9 cut(s) 206, 554, 626, 880, 904, 952, 1178, 1253, 1541
HpaI GTTAAC 1 cut(s) 718
HpaII CCGG 4 cut(s) 80, 121, 709, 758
HphI GGTGA 3 cut(s) 820, 907, 1523
Hpy166II GTNNAC 2 cut(s) 718, 1138
Hpy188I TCNGA 9 cut(s) 256, 325, 526, 909, 957, 1258, 1351, 1420, 1624
Hpy188III TCNNGA 4 cut(s) 458, 779, 1201, 1559
Hpy8I GTNNAC 2 cut(s) 718, 1138
Hpy99I CGWCG 4 cut(s) 206, 269, 272, 334
HpyAV CCTTC 9 cut(s) 37, 625, 826, 904, 929, 1082, 1236, 1627, 1645
HpyCH4III ACNGT 7 cut(s) 105, 376, 424, 1135, 1249, 1270, 1492
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 5 cut(s) 659, 724, 995, 1273, 1378
HpyF10VI GCNNNNNNNGC 5 cut(s) 412, 602, 1432, 1580, 1663
HpyF3I CTNAG 4 cut(s) 324, 672, 891, 1458
HpySE526I ACGT 1 cut(s) 267
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 3 cut(s) 239, 1371, 1633
HspAI GCGC 5 cut(s) 11, 21, 136, 605, 1708
KspAI GTTAAC 1 cut(s) 718
Kzo9I GATC 3 cut(s) 454, 1363, 1555
LmnI GCTCC 4 cut(s) 257, 296, 337, 1588
Lsp1109I GCAGC 3 cut(s) 1567, 1669, 1690
LweI GCATC 4 cut(s) 646, 1387, 1468, 1504
MaeI CTAG 3 cut(s) 477, 945, 1394
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 214
MalI GATC 3 cut(s) 456, 1365, 1557
MboI GATC 3 cut(s) 454, 1363, 1555
MfeI CAATTG 1 cut(s) 560
MhlI GDGCHC 2 cut(s) 342, 1452
MlyI GAGTC 6 cut(s) 563, 635, 874, 961, 1187, 1550
MmeI TCCRAC 1 cut(s) 279
Mph1103I ATGCAT 1 cut(s) 661
MseI TTAA 5 cut(s) 314, 717, 858, 876, 1440
MspA1I CMGCKG 1 cut(s) 1666
MspI CCGG 4 cut(s) 80, 121, 709, 758
MspR9I CCNGG 1 cut(s) 759
MunI CAATTG 1 cut(s) 560
MvnI CGCG 3 cut(s) 13, 607, 1051
MwoI GCNNNNNNNGC 5 cut(s) 412, 602, 1432, 1580, 1663
NciI CCSGG 1 cut(s) 759
NcoI CCATGG 1 cut(s) 1367
NdeII GATC 3 cut(s) 454, 1363, 1555
NlaIII CATG 3 cut(s) 239, 1371, 1633
NlaIV GGNNCC 3 cut(s) 707, 739, 1119
NsiI ATGCAT 1 cut(s) 661
NspV TTCGAA 1 cut(s) 665
PaeR7I CTCGAG 1 cut(s) 242
PfeI GAWTC 3 cut(s) 206, 904, 1253
PinAI ACCGGT 1 cut(s) 708
PkrI GCNGC 4 cut(s) 1050, 1582, 1659, 1680
PleI GAGTC 6 cut(s) 562, 634, 874, 960, 1186, 1549
PpsI GAGTC 6 cut(s) 562, 634, 874, 960, 1186, 1549
Psp124BI GAGCTC 2 cut(s) 342, 1452
PspFI CCCAGC 1 cut(s) 1673
PspN4I GGNNCC 3 cut(s) 707, 739, 1119
PspPI GGNCC 3 cut(s) 1262, 1504, 1572
PspXI VCTCGAGB 1 cut(s) 242
PvuII CAGCTG 1 cut(s) 1666
RsaI GTAC 3 cut(s) 102, 1006, 1132
RsaNI GTAC 3 cut(s) 101, 1005, 1131
SacI GAGCTC 2 cut(s) 342, 1452
SaqAI TTAA 5 cut(s) 314, 717, 858, 876, 1440
SatI GCNGC 4 cut(s) 1049, 1581, 1658, 1679
Sau3AI GATC 3 cut(s) 454, 1363, 1555
Sau96I GGNCC 3 cut(s) 1262, 1504, 1572
SchI GAGTC 6 cut(s) 563, 635, 874, 961, 1187, 1550
ScrFI CCNGG 1 cut(s) 759
SduI GDGCHC 2 cut(s) 342, 1452
SfaNI GCATC 4 cut(s) 646, 1387, 1468, 1504
SfcI CTRYAG 1 cut(s) 416
Sfr274I CTCGAG 1 cut(s) 242
SfuI TTCGAA 1 cut(s) 665
SinI GGWCC 2 cut(s) 1262, 1504
SlaI CTCGAG 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
SspMI CTAG 3 cut(s) 477, 945, 1394
SstI GAGCTC 2 cut(s) 342, 1452
StyD4I CCNGG 1 cut(s) 757
StyI CCWWGG 1 cut(s) 1367
TaaI ACNGT 7 cut(s) 105, 376, 424, 1135, 1249, 1270, 1492
TaiI ACGT 1 cut(s) 270
TaqI TCGA 5 cut(s) 204, 243, 306, 629, 665
TaqII GACCGA 2 cut(s) 273, 1521
TauI GCSGC 1 cut(s) 1051
TfiI GAWTC 3 cut(s) 206, 904, 1253
Tru1I TTAA 5 cut(s) 314, 717, 858, 876, 1440
Tru9I TTAA 5 cut(s) 314, 717, 858, 876, 1440
TscAI CASTG 2 cut(s) 1326, 1582
TseI GCWGC 3 cut(s) 1580, 1657, 1678
TspDTI ATGAA 6 cut(s) 252, 477, 993, 1101, 1595, 1646
TspGWI ACGGA 2 cut(s) 82, 88
TspRI CASTG 2 cut(s) 1326, 1582
VpaK11BI GGWCC 2 cut(s) 1262, 1504
XapI RAATTY 4 cut(s) 75, 144, 359, 1233
XhoI CTCGAG 1 cut(s) 242
XspI CTAG 3 cut(s) 477, 945, 1394
ZraI GACGTC 1 cut(s) 268
Zsp2I ATGCAT 1 cut(s) 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.