Rh4AG238700

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0013202
Physical Location & Seq
Forward (+)
54459366 .. 54462057
2692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG238700.1

Sequence Viewer

Length: 1716 bp
ATGGCGGGTGCGCGTCTTTGCGCCACCTTCCCCAATCTCGCACACCCAATCTTACCCGCCACCACCCAGCCCAAAATTCCTGTATCAGCCTCCGTTTCCGTACCGTCAAAAATCACTCGCCGGAAGAACTATTTGCGCCCCAAAATTCTCAAAACCCTAAACCCTAAACCCGACCCGCAACCCGCACAGCCCGTAGTTCCCGTCGAATCTCCAGTAACCCCATCCCAAGATAACCATGAGCTCGAGCATAGCTCAGACCGAGGCGACGTCGTTTTGGGAGGAGGAGGAGGAGGAGCTGAAGTCGAAGAATTAAGAGTGTCCGAGACGACGGCGGAGCTCAGTGGCATTTCTGGTAAATTTTCTGCGAGGACTGTGCTAAAATATGGGGGTTATTTTATTGGGCTTTTTGTGCTACAGACTGTTGTTTCTGTTTTGTTATTGGGAGATAGTGATCCTGATGAAAATAGCAAGTCTAGGAGTTCAGTATTAGGCAAATCCAATTTGAAGACGAGTTCTGGGTCTGAATTAGGCAATGTGGTTCGGTTTGATGAGTCCCAATTGGGAGAGAAAATTGAAGAGATTAGGGCAATGGCAAGGAAAGCGCGAAAGATTGAGAAGAATGAGTCCAAGGGAAGTGTTGGAAATGAGGATGATGCATTTTCGAAATCTAAAATTAAGATTGGGATTGAAAAGGAGGTTGGGAATCGGTTGGTTAACTTGCAGAAGAAGTTGGGTTCCAAAAGGGAGAAGTTGCCGGGTTCGTTTGTGAATTATCTGGAAATGTTTGGGAAGTTTGAAGACGGGGTGAGGAAGAATAATGAGAATGTGAAGGAGCTGAAGTTTAAGAAGAAGCTGAAGTTTAAGACTCCTACTGCTGAGGTGAATAGGAATCCGAAGGGTTTTGGAGGTGTCAAAGAGGAAGGTGGTTCTAGTAAGAATAAGAGAGGTTCAGGTGGTGTAGATGAAATTGGGAGAAATGCAAGTGTTGGTACTGATGGTATGGAATTGCTGGAAGCTGATGCTAAGGAGAAACCGCGAGAGACTTTGGAGAAAGGAACAGGGAGATTAGATGAAGGACAGGACAGAAAAGCTGGAAATATGGTACCGCAGAATGGTACTGTCCACAGGACTATACAGGGGAGCTCATCTGCTGAAGATGTAAAGTCAATCAAACCAAGAGGCTTCGGGAAGAAAAACCCTGAAAGCTTGAAGAAAGAAATTCAGGGAAGGACAGTAGAATCAGATGGTCCTACTGTGCAGAGTGTGAATAGCAGTTCAACACAGAAAAAAGCCAAAAAACAAGCACTGGCTAACAAAGTCAGTAGTAAGCAGTCAGACAATGAGACTGATCCATGGTGGTTGCATCTTCCTTATGTTCTAGTTATTTTTATGCGTAGAGGTTCTGATGGGCAAGGAGGGCTTTTTAGTATAGAGCTCAATTCTCAGTCCCAAAACGAGAGTGATGCTTCCTATACTGTTGCTTTTGAGGACCGTGGTGATGCCAATAACTTCTGTTTCCTATTGGAGTCTTGTTTTGAAGATCAAGATGATTTCAGGGCCACTGCTGCTCCCTTACCAAATAAAGAACTTCATAAAGCAGTAAAATCAGATGACATGAAGGTAATTGTTGTGAAGAAGGGGCAGCTTCAGCTGTATGCTGGGCAACCTTTTGCTGAAGTTGAAATGGCTTTGCACTCTTTAGTTTTACAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3110

Protein Analysis

571

Amino Acids

62.16

Weight (kDa)

9.15

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3110 PF11360 470 - 549 4.8e-06 Protein of unknown function (DUF3110)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15820
fragaria_vesca FvH4_4g18220
malus_domestica MD13G1168100.v1.1
prunus_persica Prupe.1G135700_v2.0.a1 Prupe.1G135700_v2.0.a1 Prupe.1G135700_v2.0.a1
pyrus_communis pycom13g14390
rosa_chinensis RchiOBHm_Chr4g0422351
rosa_laevigata RLG00000007617
rosa_multiflora Rmu_sc0013245.1_g000011
rosa_roxburghii Rroxscaffold_5G00364460 Rroxscaffold_5G00364470
rosa_rugosa Rorug04G0179300
rosa_samantha Rh4AG238700 Rh4BG242300 Rh4CG253800 Rh4DG237700
rosa_wichuraiana Rw4G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 270
Acc65I GGTACC 1 cut(s) 1102
AccB1I GGYRCC 1 cut(s) 1102
AccII CGCG 3 cut(s) 13, 604, 1036
AciI CCGC 7 cut(s) 5, 57, 176, 183, 332, 1034, 1106
AclWI GGATC 2 cut(s) 446, 1343
AcsI RAATTY 4 cut(s) 75, 144, 356, 1218
AcuI CTGAAG 6 cut(s) 318, 857, 875, 1173, 1631, 1695
AcyI GRCGYC 1 cut(s) 267
AfaI GTAC 4 cut(s) 102, 991, 1104, 1117
AfiI CCNNNNNNNGG 1 cut(s) 1112
AgsI TTSAA 8 cut(s) 505, 575, 689, 797, 1210, 1278, 1538, 1682
AjuI GAANNNNNNNTTGG 2 cut(s) 681, 713
Alw21I GWGCWC 4 cut(s) 243, 339, 1145, 1437
Alw26I GTCTC 3 cut(s) 317, 1034, 1337
AlwI GGATC 2 cut(s) 446, 1343
Ama87I CYCGRG 1 cut(s) 242
AoxI GGCC 1 cut(s) 1557
ApeKI GCWGC 2 cut(s) 1565, 1642
ApoI RAATTY 4 cut(s) 75, 144, 356, 1218
Asp718I GGTACC 1 cut(s) 1102
AspLEI GCGC 4 cut(s) 13, 23, 138, 604
AspS9I GGNCC 3 cut(s) 1247, 1489, 1557
AsuC2I CCSGG 1 cut(s) 756
AsuHPI GGTGA 3 cut(s) 817, 892, 1508
AsuII TTCGAA 1 cut(s) 662
AvaI CYCGRG 1 cut(s) 242
AvaII GGWCC 2 cut(s) 1247, 1489
BanI GGYRCC 1 cut(s) 1102
BanII GRGCYC 4 cut(s) 243, 339, 1145, 1437
BbsI GAAGAC 2 cut(s) 512, 804
Bbv12I GWGCWC 4 cut(s) 243, 339, 1145, 1437
BbvCI CCTCAGC 1 cut(s) 876
BbvI GCAGC 2 cut(s) 1552, 1654
BccI CCATC 4 cut(s) 229, 989, 1238, 1400
BceAI ACGGC 1 cut(s) 345
BcgI CGANNNNNNTGC 4 cut(s) 355, 389, 1445, 1479
BcnI CCSGG 1 cut(s) 756
BcoDI GTCTC 3 cut(s) 317, 1034, 1337
BfaI CTAG 3 cut(s) 474, 930, 1379
BfmI CTRYAG 1 cut(s) 413
BisI GCNGC 2 cut(s) 1566, 1643
BlsI GCNGC 2 cut(s) 1567, 1644
Bme1390I CCNGG 1 cut(s) 756
Bme18I GGWCC 2 cut(s) 1247, 1489
BmeT110I CYCGRG 1 cut(s) 242
BmgT120I GGNCC 3 cut(s) 1247, 1489, 1557
BmiI GGNNCC 2 cut(s) 736, 1104
BmrFI CCNGG 1 cut(s) 756
BmsI GCATC 5 cut(s) 643, 1009, 1372, 1453, 1489
BpiI GAAGAC 2 cut(s) 512, 804
BplI GAGNNNNNCTC 2 cut(s) 236, 268
BpmI CTGGAG 1 cut(s) 195
Bpu10I CCTNAGC 2 cut(s) 876, 1023
Bpu14I TTCGAA 1 cut(s) 662
BpuMI CCSGG 1 cut(s) 756
BsaBI GATNNNNATC 1 cut(s) 450
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 4 cut(s) 259, 627, 1352, 1492
BsaXI ACNNNNNCTCC 6 cut(s) 285, 315, 824, 854, 1552, 1582
Bsc4I CCNNNNNNNGG 1 cut(s) 1112
Bse1I ACTGG 2 cut(s) 212, 1311
Bse3DI GCAATG 2 cut(s) 538, 594
Bse8I GATNNNNATC 1 cut(s) 450
BseDI CCNNGG 4 cut(s) 259, 627, 1352, 1492
BseGI GGATG 2 cut(s) 221, 655
BseJI GATNNNNATC 1 cut(s) 450
BseLI CCNNNNNNNGG 1 cut(s) 1112
BseMI GCAATG 2 cut(s) 538, 594
BseMII CTCAG 4 cut(s) 267, 352, 867, 1457
BseNI ACTGG 2 cut(s) 212, 1311
BseRI GAGGAG 5 cut(s) 294, 297, 300, 303, 306
BseXI GCAGC 2 cut(s) 1552, 1654
BseYI CCCAGC 2 cut(s) 66, 1658
BsgI GTGCAG 1 cut(s) 1277
Bsh1236I CGCG 3 cut(s) 13, 604, 1036
BshFI GGCC 1 cut(s) 1559
BshNI GGYRCC 1 cut(s) 1102
BsiHKAI GWGCWC 4 cut(s) 243, 339, 1145, 1437
BsiHKCI CYCGRG 1 cut(s) 242
BsiSI CCGG 2 cut(s) 121, 755
BslFI GGGAC 2 cut(s) 538, 1432
BslI CCNNNNNNNGG 1 cut(s) 1112
BsmAI GTCTC 3 cut(s) 317, 1034, 1337
BsmBI CGTCTC 1 cut(s) 317
BsmFI GGGAC 2 cut(s) 538, 1432
BsnI GGCC 1 cut(s) 1559
BsoBI CYCGRG 1 cut(s) 242
Bsp119I TTCGAA 1 cut(s) 662
Bsp1286I GDGCHC 4 cut(s) 243, 339, 1145, 1437
Bsp143I GATC 3 cut(s) 451, 1348, 1540
Bsp19I CCATGG 1 cut(s) 1352
BspACI CCGC 7 cut(s) 5, 57, 176, 183, 332, 1034, 1106
BspANI GGCC 1 cut(s) 1559
BspCNI CTCAG 4 cut(s) 266, 351, 868, 1456
BspFNI CGCG 3 cut(s) 13, 604, 1036
BspLI GGNNCC 2 cut(s) 736, 1104
BspPI GGATC 2 cut(s) 446, 1343
BspT104I TTCGAA 1 cut(s) 662
BspT107I GGYRCC 1 cut(s) 1102
BsrDI GCAATG 2 cut(s) 538, 594
BsrI ACTGG 2 cut(s) 212, 1311
BssECI CCNNGG 4 cut(s) 259, 627, 1352, 1492
BssMI GATC 3 cut(s) 451, 1348, 1540
BssNI GRCGYC 1 cut(s) 267
BssT1I CCWWGG 2 cut(s) 627, 1352
Bst4CI ACNGT 8 cut(s) 105, 373, 421, 1120, 1234, 1255, 1477, 1493
Bst6I CTCTTC 1 cut(s) 570
BstACI GRCGYC 1 cut(s) 267
BstBI TTCGAA 1 cut(s) 662
BstDEI CTNAG 5 cut(s) 253, 338, 876, 1023, 1443
BstDSI CCRYGG 2 cut(s) 1352, 1492
BstF5I GGATG 2 cut(s) 221, 655
BstFNI CGCG 3 cut(s) 13, 604, 1036
BstHHI GCGC 4 cut(s) 13, 23, 138, 604
BstKTI GATC 3 cut(s) 454, 1351, 1543
BstMAI GTCTC 3 cut(s) 317, 1034, 1337
BstMBI GATC 3 cut(s) 451, 1348, 1540
BstMWI GCNNNNNNNGC 5 cut(s) 409, 599, 1417, 1565, 1648
BstSCI CCNGG 1 cut(s) 754
BstSFI CTRYAG 1 cut(s) 413
BstUI CGCG 3 cut(s) 13, 604, 1036
BstV1I GCAGC 2 cut(s) 1552, 1654
BstV2I GAAGAC 2 cut(s) 512, 804
BsuRI GGCC 1 cut(s) 1559
BtgI CCRYGG 2 cut(s) 1352, 1492
BtsCI GGATG 2 cut(s) 221, 655
BtsI GCAGTG 1 cut(s) 1560
BtsIMutI CAGTG 3 cut(s) 346, 1304, 1560
CfoI GCGC 4 cut(s) 13, 23, 138, 604
Cfr13I GGNCC 3 cut(s) 1247, 1489, 1557
CseI GACGC 1 cut(s) 2
Csp6I GTAC 4 cut(s) 101, 990, 1103, 1116
CviAII CATG 3 cut(s) 236, 1353, 1615
CviQI GTAC 4 cut(s) 101, 990, 1103, 1116
DdeI CTNAG 5 cut(s) 253, 338, 876, 1023, 1443
DpnI GATC 3 cut(s) 453, 1350, 1542
DpnII GATC 3 cut(s) 451, 1348, 1540
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
EciI GGCGGA 1 cut(s) 347
Ecl136II GAGCTC 4 cut(s) 241, 337, 1143, 1435
Eco130I CCWWGG 2 cut(s) 627, 1352
Eco24I GRGCYC 4 cut(s) 243, 339, 1145, 1437
Eco47I GGWCC 2 cut(s) 1247, 1489
Eco53kI GAGCTC 4 cut(s) 241, 337, 1143, 1435
Eco57I CTGAAG 6 cut(s) 318, 857, 875, 1173, 1631, 1695
Eco88I CYCGRG 1 cut(s) 242
EcoICRI GAGCTC 4 cut(s) 241, 337, 1143, 1435
EcoT14I CCWWGG 2 cut(s) 627, 1352
EcoT22I ATGCAT 1 cut(s) 658
EcoT38I GRGCYC 4 cut(s) 243, 339, 1145, 1437
ErhI CCWWGG 2 cut(s) 627, 1352
Esp3I CGTCTC 1 cut(s) 317
FaeI CATG 3 cut(s) 239, 1356, 1618
FalI AAGNNNNNCTT 2 cut(s) 1404, 1436
FaqI GGGAC 2 cut(s) 538, 1432
FatI CATG 3 cut(s) 235, 1352, 1614
FauI CCCGC 3 cut(s) 64, 183, 190
Fnu4HI GCNGC 2 cut(s) 1566, 1643
FokI GGATG 2 cut(s) 208, 662
FriOI GRGCYC 4 cut(s) 243, 339, 1145, 1437
Fsp4HI GCNGC 2 cut(s) 1566, 1643
FspBI CTAG 3 cut(s) 474, 930, 1379
GlaI GCGC 4 cut(s) 12, 22, 137, 603
GluI GCNGC 2 cut(s) 1566, 1643
GsaI CCCAGC 2 cut(s) 70, 1662
GsuI CTGGAG 1 cut(s) 195
HaeIII GGCC 1 cut(s) 1559
HapII CCGG 2 cut(s) 121, 755
HgaI GACGC 1 cut(s) 2
HhaI GCGC 4 cut(s) 13, 23, 138, 604
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 3 cut(s) 239, 1356, 1618
Hin6I GCGC 4 cut(s) 11, 21, 136, 602
HinP1I GCGC 4 cut(s) 11, 21, 136, 602
HincII GTYRAC 1 cut(s) 715
HindII GTYRAC 1 cut(s) 715
HindIII AAGCTT 1 cut(s) 1204
HinfI GANTC 8 cut(s) 206, 551, 623, 703, 865, 889, 1238, 1526
HpaI GTTAAC 1 cut(s) 715
HpaII CCGG 2 cut(s) 121, 755
HphI GGTGA 3 cut(s) 817, 892, 1508
Hpy166II GTNNAC 2 cut(s) 715, 1123
Hpy188I TCNGA 8 cut(s) 256, 322, 523, 894, 1243, 1336, 1405, 1609
Hpy188III TCNNGA 4 cut(s) 455, 776, 1186, 1544
Hpy8I GTNNAC 2 cut(s) 715, 1123
Hpy99I CGWCG 4 cut(s) 206, 269, 272, 331
HpyAV CCTTC 8 cut(s) 37, 823, 889, 914, 1067, 1221, 1612, 1630
HpyCH4III ACNGT 8 cut(s) 105, 373, 421, 1120, 1234, 1255, 1477, 1493
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 6 cut(s) 656, 721, 980, 1258, 1363, 1693
HpyF10VI GCNNNNNNNGC 5 cut(s) 409, 599, 1417, 1565, 1648
HpyF3I CTNAG 5 cut(s) 253, 338, 876, 1023, 1443
HpySE526I ACGT 1 cut(s) 267
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 3 cut(s) 239, 1356, 1618
HspAI GCGC 4 cut(s) 11, 21, 136, 602
KpnI GGTACC 1 cut(s) 1106
KspAI GTTAAC 1 cut(s) 715
Kzo9I GATC 3 cut(s) 451, 1348, 1540
LmnI GCTCC 5 cut(s) 293, 334, 832, 1140, 1573
Lsp1109I GCAGC 2 cut(s) 1552, 1654
LweI GCATC 5 cut(s) 643, 1009, 1372, 1453, 1489
MaeI CTAG 3 cut(s) 474, 930, 1379
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 214
MalI GATC 3 cut(s) 453, 1350, 1542
MboI GATC 3 cut(s) 451, 1348, 1540
MfeI CAATTG 1 cut(s) 557
MhlI GDGCHC 4 cut(s) 243, 339, 1145, 1437
MlyI GAGTC 4 cut(s) 560, 632, 859, 1535
MmeI TCCRAC 1 cut(s) 619
Mph1103I ATGCAT 1 cut(s) 658
MseI TTAA 5 cut(s) 311, 675, 714, 843, 861
MspA1I CMGCKG 1 cut(s) 1651
MspI CCGG 2 cut(s) 121, 755
MspR9I CCNGG 1 cut(s) 756
MunI CAATTG 1 cut(s) 557
MvnI CGCG 3 cut(s) 13, 604, 1036
MwoI GCNNNNNNNGC 5 cut(s) 409, 599, 1417, 1565, 1648
NciI CCSGG 1 cut(s) 756
NcoI CCATGG 1 cut(s) 1352
NdeII GATC 3 cut(s) 451, 1348, 1540
NlaIII CATG 3 cut(s) 239, 1356, 1618
NlaIV GGNNCC 2 cut(s) 736, 1104
NsiI ATGCAT 1 cut(s) 658
NspV TTCGAA 1 cut(s) 662
PaeR7I CTCGAG 1 cut(s) 242
PfeI GAWTC 4 cut(s) 206, 703, 889, 1238
PkrI GCNGC 2 cut(s) 1567, 1644
PleI GAGTC 4 cut(s) 559, 631, 859, 1534
PpsI GAGTC 4 cut(s) 559, 631, 859, 1534
Psp124BI GAGCTC 4 cut(s) 243, 339, 1145, 1437
PspFI CCCAGC 2 cut(s) 66, 1658
PspN4I GGNNCC 2 cut(s) 736, 1104
PspPI GGNCC 3 cut(s) 1247, 1489, 1557
PspXI VCTCGAGB 1 cut(s) 242
PvuII CAGCTG 1 cut(s) 1651
RsaI GTAC 4 cut(s) 102, 991, 1104, 1117
RsaNI GTAC 4 cut(s) 101, 990, 1103, 1116
SacI GAGCTC 4 cut(s) 243, 339, 1145, 1437
SaqAI TTAA 5 cut(s) 311, 675, 714, 843, 861
SatI GCNGC 2 cut(s) 1566, 1643
Sau3AI GATC 3 cut(s) 451, 1348, 1540
Sau96I GGNCC 3 cut(s) 1247, 1489, 1557
SchI GAGTC 4 cut(s) 560, 632, 859, 1535
ScrFI CCNGG 1 cut(s) 756
SduI GDGCHC 4 cut(s) 243, 339, 1145, 1437
SfaNI GCATC 5 cut(s) 643, 1009, 1372, 1453, 1489
SfcI CTRYAG 1 cut(s) 413
Sfr274I CTCGAG 1 cut(s) 242
SfuI TTCGAA 1 cut(s) 662
SinI GGWCC 2 cut(s) 1247, 1489
SlaI CTCGAG 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
SsiI CCGC 7 cut(s) 5, 57, 176, 183, 332, 1034, 1106
SspMI CTAG 3 cut(s) 474, 930, 1379
SstI GAGCTC 4 cut(s) 243, 339, 1145, 1437
StyD4I CCNGG 1 cut(s) 754
StyI CCWWGG 2 cut(s) 627, 1352
TaaI ACNGT 8 cut(s) 105, 373, 421, 1120, 1234, 1255, 1477, 1493
TaiI ACGT 1 cut(s) 270
TaqI TCGA 4 cut(s) 204, 243, 303, 662
TaqII GACCGA 1 cut(s) 273
TfiI GAWTC 4 cut(s) 206, 703, 889, 1238
Tru1I TTAA 5 cut(s) 311, 675, 714, 843, 861
Tru9I TTAA 5 cut(s) 311, 675, 714, 843, 861
TscAI CASTG 3 cut(s) 346, 1311, 1567
TseI GCWGC 2 cut(s) 1565, 1642
TspDTI ATGAA 5 cut(s) 474, 978, 1086, 1580, 1631
TspGWI ACGGA 2 cut(s) 82, 88
TspRI CASTG 3 cut(s) 346, 1311, 1567
VpaK11BI GGWCC 2 cut(s) 1247, 1489
XapI RAATTY 4 cut(s) 75, 144, 356, 1218
XhoI CTCGAG 1 cut(s) 242
XspI CTAG 3 cut(s) 474, 930, 1379
ZraI GACGTC 1 cut(s) 268
Zsp2I ATGCAT 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.