Rh4CG253800

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0013202
Physical Location & Seq
Forward (+)
50377684 .. 50380958
3275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG253800.1

Sequence Viewer

Length: 1686 bp
ATGGCGGGTGCGCGTCTTTGCGCCACCTTCCCCAATCTCGCACACCCAATCTTACCCGCCACCACCCCGCCCAAAATTCCTGTATCAGCCTCCGTTTCCGTACCGTCAAAAATCACTCGCCGGAAGAACTATTTGCGCCCCAAAATTCTCAAAACCCTAAACCCTAAACCCGACCCGCAACCCGCACAGCCCGTAGTTCCCGTCGAATCTCCAGTAACCCCATCCCAAGATAACCATGAGCTTGAGCATAGCTCCGACCGAGGCGACGTCGTTTTGGGAGGAGGAGGAGGAGCTGAAGTCGAAGAATTAAGAGTGTCTGAGACGACGGCGGAGCTCAGTGGCATTTCTGGTAAATTTTCTGCGAGGACTGTGCTAAAATATGGGGGCTATTTTATTGGGCTTTTTGTGCTACAGACTGTTGTTTCTGTTTTGTTATTGGGAGATAGTGATCCTGATGAAAATAGCAAGTCTAGGAGTTCAGTATCAGGCAAATCCAATTTGAAGACGAGTTCTGGGTCTGAATTGGGCAATGTGGTTCGGTTTGATGAGTCCCGATTGGGAGAGAAAATTGAAGAGATTAGGGCAATGGCAAGGAAAGCGCGAAAGATTGAGAAGAATGAGTCCAAGGGAAGTATTGGAAATGAGGATGATGCATTTTCGAAATCTAAAATGAAGATTGGGATTGAAAAGGAGGTTGGGAATCGGTTGGTTAACTTGCAGAAGAAGTTGGGTTCCAAAAGGGAGAAGTTGCCGGGTTCGTTTGTGAATTATCTGGAAATGTTTGGGAAGTTTGAAGACGGGGTGAGGAAGAATAATGAGAATGTGAAGGAGGGGGATGGGGCGTTGATGTTTAAGAAGAGGCTGAAGTTTAAGACTCCTACTGCTGAGGTGAATAGGAATCCGAAGGGTTTTGGAGGTGTCAAAGAGGAAGGTGGTTCTAGTAAGAGTAAGAGAGGTTCAGGTGGTGTAGATGAAATTGGGAGAAATGCAAGTGTTGGTACTGATGGTATGGAATTGCTGGAAGCTGATGATAAGGAGAAGCCGCGAGAGACTTTGGAGAAAGGAACAGGGAGATTAGATGAAGGACAGGACAGAGAAGCTGGAAATATGGTACCGCAGAATGGTACTGTCCACAGGACTATACAAGGGAGGTCATCTGCTGAAGATGTAGAGTCAATCAAACCAAGAGGCTTTGGGAAGAAAAACCCTGAAAGCTTCAAGAAAGAAATTCAGGGAAGGACAGTAGAATCAGATGGTCCTACTGTGCAGAGTGTGAATAGCGGTTCAACACAGAAAAAAGCCAAAAAACAAGCACTGGCTAACAAAGTCAGTAGTAAGCAGTCAGACAATGAGACTGATCCATGGTGGTTGCATCTTCCTTATGTTCTAGTTATTTTTATGCGTAGAGGTTCTGATGGGCAAGGAGGGCTTTTTAGCATAGAGCTCAATTCTCAGTCCCAAAACGAGAGTGATGCTTCCTATACTGTTGCTTTTGAGGACCGTGGTGATGCCAATAACTTTTGTTTCCTATTGGAGTCTTGTTTTGAAGATCAAGATGATTTCAGGGCCACTGCTGCTCCCTTACCAAATAAAGTAAGAACTTCTGAACATATATGCCCAAGACTTGAGCATGCTTTGTCACACTTATTAAGAATCATCAGTGCCAAGATGAGTAAGGGACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3110

Protein Analysis

561

Amino Acids

61.14

Weight (kDa)

9.05

Isoelectric Point (pI)

42.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15820
fragaria_vesca FvH4_4g18220
malus_domestica MD13G1168100.v1.1
prunus_persica Prupe.1G135700_v2.0.a1 Prupe.1G135700_v2.0.a1 Prupe.1G135700_v2.0.a1
pyrus_communis pycom13g14390
rosa_chinensis RchiOBHm_Chr4g0422351
rosa_laevigata RLG00000007617
rosa_multiflora Rmu_sc0013245.1_g000011
rosa_roxburghii Rroxscaffold_5G00364460 Rroxscaffold_5G00364470
rosa_rugosa Rorug04G0179300
rosa_samantha Rh4AG238700 Rh4BG242300 Rh4CG253800 Rh4DG237700
rosa_wichuraiana Rw4G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 270
Acc65I GGTACC 1 cut(s) 1111
AccB1I GGYRCC 1 cut(s) 1111
AccII CGCG 3 cut(s) 13, 601, 1045
AciI CCGC 9 cut(s) 5, 57, 68, 176, 183, 329, 1043, 1115, 1281
AclWI GGATC 2 cut(s) 443, 1352
AcsI RAATTY 4 cut(s) 75, 144, 353, 1227
AcuI CTGAAG 3 cut(s) 315, 884, 1182
AcyI GRCGYC 1 cut(s) 267
AfaI GTAC 4 cut(s) 102, 1000, 1113, 1126
AfiI CCNNNNNNNGG 1 cut(s) 1121
AgsI TTSAA 7 cut(s) 502, 572, 686, 794, 1219, 1287, 1547
AjuI GAANNNNNNNTTGG 2 cut(s) 678, 710
AluBI AGCT 8 cut(s) 241, 252, 293, 334, 1025, 1100, 1215, 1444
AluI AGCT 8 cut(s) 241, 252, 293, 334, 1025, 1100, 1215, 1444
Alw21I GWGCWC 2 cut(s) 336, 1446
Alw26I GTCTC 3 cut(s) 314, 1043, 1346
AlwI GGATC 2 cut(s) 443, 1352
AoxI GGCC 1 cut(s) 1566
ApeKI GCWGC 1 cut(s) 1574
ApoI RAATTY 4 cut(s) 75, 144, 353, 1227
Asp718I GGTACC 1 cut(s) 1111
AspLEI GCGC 4 cut(s) 13, 23, 138, 601
AspS9I GGNCC 3 cut(s) 1256, 1498, 1566
AsuC2I CCSGG 1 cut(s) 753
AsuHPI GGTGA 3 cut(s) 814, 901, 1517
AsuII TTCGAA 1 cut(s) 659
AvaII GGWCC 2 cut(s) 1256, 1498
BanI GGYRCC 1 cut(s) 1111
BanII GRGCYC 2 cut(s) 336, 1446
BbsI GAAGAC 2 cut(s) 509, 801
Bbv12I GWGCWC 2 cut(s) 336, 1446
BbvCI CCTCAGC 1 cut(s) 885
BbvI GCAGC 1 cut(s) 1561
BccI CCATC 5 cut(s) 229, 830, 998, 1247, 1409
BceAI ACGGC 1 cut(s) 342
BcgI CGANNNNNNTGC 4 cut(s) 352, 386, 1454, 1488
BcnI CCSGG 1 cut(s) 753
BcoDI GTCTC 3 cut(s) 314, 1043, 1346
BfaI CTAG 3 cut(s) 471, 939, 1388
BfmI CTRYAG 1 cut(s) 410
BisI GCNGC 2 cut(s) 1043, 1575
BlsI GCNGC 2 cut(s) 1044, 1576
Bme1390I CCNGG 1 cut(s) 753
Bme18I GGWCC 2 cut(s) 1256, 1498
BmgT120I GGNCC 3 cut(s) 1256, 1498, 1566
BmiI GGNNCC 2 cut(s) 733, 1113
BmrFI CCNGG 1 cut(s) 753
BmsI GCATC 4 cut(s) 640, 1381, 1462, 1498
BpiI GAAGAC 2 cut(s) 509, 801
BplI GAGNNNNNCTC 2 cut(s) 236, 268
BpmI CTGGAG 1 cut(s) 195
Bpu10I CCTNAGC 1 cut(s) 885
Bpu14I TTCGAA 1 cut(s) 659
BpuEI CTTGAG 2 cut(s) 263, 1646
BpuMI CCSGG 1 cut(s) 753
BsaBI GATNNNNATC 1 cut(s) 447
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 4 cut(s) 259, 624, 1361, 1501
BsaXI ACNNNNNCTCC 4 cut(s) 282, 312, 1561, 1591
Bsc4I CCNNNNNNNGG 1 cut(s) 1121
Bse1I ACTGG 2 cut(s) 212, 1320
Bse3DI GCAATG 2 cut(s) 535, 591
Bse8I GATNNNNATC 1 cut(s) 447
BseDI CCNNGG 4 cut(s) 259, 624, 1361, 1501
BseGI GGATG 3 cut(s) 221, 652, 841
BseJI GATNNNNATC 1 cut(s) 447
BseLI CCNNNNNNNGG 1 cut(s) 1121
BseMI GCAATG 2 cut(s) 535, 591
BseMII CTCAG 4 cut(s) 309, 349, 876, 1466
BseNI ACTGG 2 cut(s) 212, 1320
BseRI GAGGAG 4 cut(s) 294, 297, 300, 303
BseXI GCAGC 1 cut(s) 1561
BsgI GTGCAG 1 cut(s) 1286
Bsh1236I CGCG 3 cut(s) 13, 601, 1045
Bsh1285I CGRYCG 1 cut(s) 259
BshFI GGCC 1 cut(s) 1568
BshNI GGYRCC 1 cut(s) 1111
BsiEI CGRYCG 1 cut(s) 259
BsiHKAI GWGCWC 2 cut(s) 336, 1446
BsiSI CCGG 2 cut(s) 121, 752
BslFI GGGAC 2 cut(s) 535, 1441
BslI CCNNNNNNNGG 1 cut(s) 1121
BsmAI GTCTC 3 cut(s) 314, 1043, 1346
BsmBI CGTCTC 1 cut(s) 314
BsmFI GGGAC 2 cut(s) 535, 1441
BsnI GGCC 1 cut(s) 1568
Bsp119I TTCGAA 1 cut(s) 659
Bsp1286I GDGCHC 2 cut(s) 336, 1446
Bsp143I GATC 3 cut(s) 448, 1357, 1549
Bsp19I CCATGG 1 cut(s) 1361
BspACI CCGC 9 cut(s) 5, 57, 68, 176, 183, 329, 1043, 1115, 1281
BspANI GGCC 1 cut(s) 1568
BspCNI CTCAG 4 cut(s) 310, 348, 877, 1465
BspFNI CGCG 3 cut(s) 13, 601, 1045
BspLI GGNNCC 2 cut(s) 733, 1113
BspPI GGATC 2 cut(s) 443, 1352
BspT104I TTCGAA 1 cut(s) 659
BspT107I GGYRCC 1 cut(s) 1111
BsrDI GCAATG 2 cut(s) 535, 591
BsrI ACTGG 2 cut(s) 212, 1320
BssECI CCNNGG 4 cut(s) 259, 624, 1361, 1501
BssMI GATC 3 cut(s) 448, 1357, 1549
BssNI GRCGYC 1 cut(s) 267
BssT1I CCWWGG 2 cut(s) 624, 1361
Bst4CI ACNGT 8 cut(s) 105, 370, 418, 1129, 1243, 1264, 1486, 1502
Bst6I CTCTTC 2 cut(s) 567, 851
BstACI GRCGYC 1 cut(s) 267
BstBI TTCGAA 1 cut(s) 659
BstC8I GCNNGC 1 cut(s) 1632
BstDEI CTNAG 4 cut(s) 318, 335, 885, 1452
BstDSI CCRYGG 2 cut(s) 1361, 1501
BstF5I GGATG 3 cut(s) 221, 652, 841
BstFNI CGCG 3 cut(s) 13, 601, 1045
BstHHI GCGC 4 cut(s) 13, 23, 138, 601
BstKTI GATC 3 cut(s) 451, 1360, 1552
BstMAI GTCTC 3 cut(s) 314, 1043, 1346
BstMBI GATC 3 cut(s) 448, 1357, 1549
BstMCI CGRYCG 1 cut(s) 259
BstMWI GCNNNNNNNGC 4 cut(s) 406, 596, 1426, 1574
BstNSI RCATGY 1 cut(s) 1634
BstSCI CCNGG 1 cut(s) 751
BstSFI CTRYAG 1 cut(s) 410
BstUI CGCG 3 cut(s) 13, 601, 1045
BstV1I GCAGC 1 cut(s) 1561
BstV2I GAAGAC 2 cut(s) 509, 801
BsuRI GGCC 1 cut(s) 1568
BtgI CCRYGG 2 cut(s) 1361, 1501
BtsCI GGATG 3 cut(s) 221, 652, 841
BtsI GCAGTG 1 cut(s) 1569
BtsIMutI CAGTG 4 cut(s) 343, 1313, 1569, 1666
Cac8I GCNNGC 1 cut(s) 1632
CfoI GCGC 4 cut(s) 13, 23, 138, 601
Cfr13I GGNCC 3 cut(s) 1256, 1498, 1566
CseI GACGC 1 cut(s) 2
Csp6I GTAC 4 cut(s) 101, 999, 1112, 1125
CviAII CATG 3 cut(s) 236, 1362, 1631
CviQI GTAC 4 cut(s) 101, 999, 1112, 1125
DdeI CTNAG 4 cut(s) 318, 335, 885, 1452
DpnI GATC 3 cut(s) 450, 1359, 1551
DpnII GATC 3 cut(s) 448, 1357, 1549
Eam1104I CTCTTC 2 cut(s) 567, 851
EarI CTCTTC 2 cut(s) 567, 851
EciI GGCGGA 1 cut(s) 344
Ecl136II GAGCTC 2 cut(s) 334, 1444
Eco130I CCWWGG 2 cut(s) 624, 1361
Eco24I GRGCYC 2 cut(s) 336, 1446
Eco47I GGWCC 2 cut(s) 1256, 1498
Eco53kI GAGCTC 2 cut(s) 334, 1444
Eco57I CTGAAG 3 cut(s) 315, 884, 1182
EcoICRI GAGCTC 2 cut(s) 334, 1444
EcoT14I CCWWGG 2 cut(s) 624, 1361
EcoT22I ATGCAT 1 cut(s) 655
EcoT38I GRGCYC 2 cut(s) 336, 1446
ErhI CCWWGG 2 cut(s) 624, 1361
Esp3I CGTCTC 1 cut(s) 314
FaeI CATG 3 cut(s) 239, 1365, 1634
FalI AAGNNNNNCTT 2 cut(s) 1413, 1445
FaqI GGGAC 2 cut(s) 535, 1441
FatI CATG 3 cut(s) 235, 1361, 1630
FauI CCCGC 4 cut(s) 64, 75, 183, 190
Fnu4HI GCNGC 2 cut(s) 1043, 1575
FokI GGATG 3 cut(s) 208, 659, 848
FriOI GRGCYC 2 cut(s) 336, 1446
Fsp4HI GCNGC 2 cut(s) 1043, 1575
FspBI CTAG 3 cut(s) 471, 939, 1388
GlaI GCGC 4 cut(s) 12, 22, 137, 600
GluI GCNGC 2 cut(s) 1043, 1575
GsuI CTGGAG 1 cut(s) 195
HaeIII GGCC 1 cut(s) 1568
HapII CCGG 2 cut(s) 121, 752
HgaI GACGC 1 cut(s) 2
HhaI GCGC 4 cut(s) 13, 23, 138, 601
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 3 cut(s) 239, 1365, 1634
Hin6I GCGC 4 cut(s) 11, 21, 136, 599
HinP1I GCGC 4 cut(s) 11, 21, 136, 599
HincII GTYRAC 1 cut(s) 712
HindII GTYRAC 1 cut(s) 712
HindIII AAGCTT 1 cut(s) 1213
HpaI GTTAAC 1 cut(s) 712
HpaII CCGG 2 cut(s) 121, 752
HphI GGTGA 3 cut(s) 814, 901, 1517
Hpy166II GTNNAC 2 cut(s) 712, 1132
Hpy188I TCNGA 8 cut(s) 256, 319, 520, 903, 1252, 1345, 1414, 1606
Hpy188III TCNNGA 5 cut(s) 452, 552, 773, 1219, 1553
Hpy8I GTNNAC 2 cut(s) 712, 1132
Hpy99I CGWCG 4 cut(s) 206, 269, 272, 328
HpyAV CCTTC 6 cut(s) 37, 820, 898, 923, 1076, 1230
HpyCH4III ACNGT 8 cut(s) 105, 370, 418, 1129, 1243, 1264, 1486, 1502
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 5 cut(s) 653, 718, 989, 1267, 1372
HpyF10VI GCNNNNNNNGC 4 cut(s) 406, 596, 1426, 1574
HpyF3I CTNAG 4 cut(s) 318, 335, 885, 1452
HpySE526I ACGT 1 cut(s) 267
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 3 cut(s) 239, 1365, 1634
HspAI GCGC 4 cut(s) 11, 21, 136, 599
KpnI GGTACC 1 cut(s) 1115
KspAI GTTAAC 1 cut(s) 712
Kzo9I GATC 3 cut(s) 448, 1357, 1549
LmnI GCTCC 4 cut(s) 257, 290, 331, 1582
Lsp1109I GCAGC 1 cut(s) 1561
LweI GCATC 4 cut(s) 640, 1381, 1462, 1498
MaeI CTAG 3 cut(s) 471, 939, 1388
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 2 cut(s) 214, 1638
MalI GATC 3 cut(s) 450, 1359, 1551
MboI GATC 3 cut(s) 448, 1357, 1549
MhlI GDGCHC 2 cut(s) 336, 1446
MlyI GAGTC 5 cut(s) 557, 629, 868, 1181, 1544
MmeI TCCRAC 1 cut(s) 279
Mph1103I ATGCAT 1 cut(s) 655
MseI TTAA 6 cut(s) 308, 711, 852, 870, 1649, 1684
MspI CCGG 2 cut(s) 121, 752
MspR9I CCNGG 1 cut(s) 753
MvnI CGCG 3 cut(s) 13, 601, 1045
MwoI GCNNNNNNNGC 4 cut(s) 406, 596, 1426, 1574
NciI CCSGG 1 cut(s) 753
NcoI CCATGG 1 cut(s) 1361
NdeII GATC 3 cut(s) 448, 1357, 1549
NlaIII CATG 3 cut(s) 239, 1365, 1634
NlaIV GGNNCC 2 cut(s) 733, 1113
NmuCI GTSAC 1 cut(s) 1638
NsiI ATGCAT 1 cut(s) 655
NspI RCATGY 1 cut(s) 1634
NspV TTCGAA 1 cut(s) 659
PaeI GCATGC 1 cut(s) 1634
PfeI GAWTC 5 cut(s) 206, 700, 898, 1247, 1653
PkrI GCNGC 2 cut(s) 1044, 1576
PleI GAGTC 5 cut(s) 556, 628, 868, 1180, 1543
PpsI GAGTC 5 cut(s) 556, 628, 868, 1180, 1543
Psp124BI GAGCTC 2 cut(s) 336, 1446
PspN4I GGNNCC 2 cut(s) 733, 1113
PspPI GGNCC 3 cut(s) 1256, 1498, 1566
PsrI GAACNNNNNNTAC 2 cut(s) 940, 972
RsaI GTAC 4 cut(s) 102, 1000, 1113, 1126
RsaNI GTAC 4 cut(s) 101, 999, 1112, 1125
SacI GAGCTC 2 cut(s) 336, 1446
SaqAI TTAA 6 cut(s) 308, 711, 852, 870, 1649, 1684
SatI GCNGC 2 cut(s) 1043, 1575
Sau3AI GATC 3 cut(s) 448, 1357, 1549
Sau96I GGNCC 3 cut(s) 1256, 1498, 1566
SchI GAGTC 5 cut(s) 557, 629, 868, 1181, 1544
ScrFI CCNGG 1 cut(s) 753
SduI GDGCHC 2 cut(s) 336, 1446
SfaNI GCATC 4 cut(s) 640, 1381, 1462, 1498
SfcI CTRYAG 1 cut(s) 410
SfuI TTCGAA 1 cut(s) 659
SinI GGWCC 2 cut(s) 1256, 1498
SmlI CTYRAG 2 cut(s) 242, 1625
SmoI CTYRAG 2 cut(s) 242, 1625
SphI GCATGC 1 cut(s) 1634
SsiI CCGC 9 cut(s) 5, 57, 68, 176, 183, 329, 1043, 1115, 1281
SspMI CTAG 3 cut(s) 471, 939, 1388
SstI GAGCTC 2 cut(s) 336, 1446
StyD4I CCNGG 1 cut(s) 751
StyI CCWWGG 2 cut(s) 624, 1361
TaaI ACNGT 8 cut(s) 105, 370, 418, 1129, 1243, 1264, 1486, 1502
TaiI ACGT 1 cut(s) 270
TaqI TCGA 3 cut(s) 204, 300, 659
TaqII GACCGA 1 cut(s) 273
TauI GCSGC 1 cut(s) 1045
TfiI GAWTC 5 cut(s) 206, 700, 898, 1247, 1653
Tru1I TTAA 6 cut(s) 308, 711, 852, 870, 1649, 1684
Tru9I TTAA 6 cut(s) 308, 711, 852, 870, 1649, 1684
TscAI CASTG 4 cut(s) 343, 1320, 1576, 1666
TseFI GTSAC 1 cut(s) 1638
TseI GCWGC 1 cut(s) 1574
Tsp45I GTSAC 1 cut(s) 1638
TspDTI ATGAA 4 cut(s) 471, 686, 987, 1095
TspGWI ACGGA 2 cut(s) 82, 88
TspRI CASTG 4 cut(s) 343, 1320, 1576, 1666
VpaK11BI GGWCC 2 cut(s) 1256, 1498
XapI RAATTY 4 cut(s) 75, 144, 353, 1227
XceI RCATGY 1 cut(s) 1634
XspI CTAG 3 cut(s) 471, 939, 1388
ZraI GACGTC 1 cut(s) 268
Zsp2I ATGCAT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.