BEST Arabidopsis thaliana protein match is
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G15820 |
| fragaria_vesca | FvH4_4g18220 |
| malus_domestica | MD13G1168100.v1.1 |
| prunus_persica | Prupe.1G135700_v2.0.a1 Prupe.1G135700_v2.0.a1 Prupe.1G135700_v2.0.a1 |
| pyrus_communis | pycom13g14390 |
| rosa_chinensis | RchiOBHm_Chr4g0422351 |
| rosa_laevigata | RLG00000007617 |
| rosa_multiflora | Rmu_sc0013245.1_g000011 |
| rosa_roxburghii | Rroxscaffold_5G00364460 Rroxscaffold_5G00364470 |
| rosa_rugosa | Rorug04G0179300 |
| rosa_samantha | Rh4AG238700 Rh4BG242300 Rh4CG253800 Rh4DG237700 |
| rosa_wichuraiana | Rw4G020640 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 43 |
| AatII | GACGTC | 1 cut(s) | 447 |
| Acc16I | TGCGCA | 1 cut(s) | 165 |
| Acc36I | ACCTGC | 1 cut(s) | 43 |
| Acc65I | GGTACC | 1 cut(s) | 1343 |
| AccB1I | GGYRCC | 1 cut(s) | 1343 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1340 |
| AccBSI | CCGCTC | 1 cut(s) | 880 |
| AccI | GTMKAC | 1 cut(s) | 1744 |
| AclI | AACGTT | 1 cut(s) | 51 |
| AclWI | GGATC | 3 cut(s) | 1565, 1593, 1606 |
| AcsI | RAATTY | 6 cut(s) | 110, 524, 548, 907, 979, 1440 |
| AcuI | CTGAAG | 2 cut(s) | 1398, 1859 |
| AcyI | GRCGYC | 1 cut(s) | 444 |
| AfaI | GTAC | 3 cut(s) | 95, 252, 1345 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 158, 270, 1340, 1380 |
| AgsI | TTSAA | 8 cut(s) | 115, 146, 473, 802, 907, 1500, 1901, 1934 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 83, 115 |
| Alw26I | GTCTC | 2 cut(s) | 1428, 1904 |
| AlwI | GGATC | 3 cut(s) | 1565, 1593, 1606 |
| AoxI | GGCC | 1 cut(s) | 1032 |
| ApeKI | GCWGC | 3 cut(s) | 124, 1475, 1870 |
| ApoI | RAATTY | 6 cut(s) | 110, 524, 548, 907, 979, 1440 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 677, 709, 855, 887 |
| Asp718I | GGTACC | 1 cut(s) | 1343 |
| AspLEI | GCGC | 5 cut(s) | 66, 166, 173, 1677, 1923 |
| AspS9I | GGNCC | 1 cut(s) | 932 |
| AsuC2I | CCSGG | 3 cut(s) | 389, 500, 1888 |
| AsuHPI | GGTGA | 5 cut(s) | 24, 830, 1094, 1478, 1787 |
| AsuII | TTCGAA | 3 cut(s) | 683, 1713, 1764 |
| AvaII | GGWCC | 1 cut(s) | 932 |
| BanI | GGYRCC | 1 cut(s) | 1343 |
| BanII | GRGCYC | 1 cut(s) | 8 |
| BbsI | GAAGAC | 1 cut(s) | 1361 |
| BbvI | GCAGC | 3 cut(s) | 136, 1462, 1882 |
| BccI | CCATC | 2 cut(s) | 989, 1148 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 431, 465, 765, 799 |
| BclI | TGATCA | 1 cut(s) | 625 |
| BcnI | CCSGG | 3 cut(s) | 389, 500, 1888 |
| BcoDI | GTCTC | 2 cut(s) | 1428, 1904 |
| BfaI | CTAG | 1 cut(s) | 1089 |
| BfoI | RGCGCY | 1 cut(s) | 1678 |
| BfuAI | ACCTGC | 1 cut(s) | 43 |
| BglII | AGATCT | 1 cut(s) | 1768 |
| BisI | GCNGC | 5 cut(s) | 125, 174, 453, 1476, 1871 |
| BlsI | GCNGC | 5 cut(s) | 126, 175, 454, 1477, 1872 |
| Bme1390I | CCNGG | 3 cut(s) | 389, 500, 1888 |
| Bme18I | GGWCC | 1 cut(s) | 932 |
| BmgT120I | GGNCC | 1 cut(s) | 932 |
| BmiI | GGNNCC | 5 cut(s) | 7, 366, 933, 1345, 1524 |
| BmrFI | CCNGG | 3 cut(s) | 389, 500, 1888 |
| BmrI | ACTGGG | 1 cut(s) | 645 |
| BmsI | GCATC | 3 cut(s) | 829, 1126, 1717 |
| BmuI | ACTGGG | 1 cut(s) | 645 |
| BpiI | GAAGAC | 1 cut(s) | 1361 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 395, 427 |
| Bpu14I | TTCGAA | 3 cut(s) | 683, 1713, 1764 |
| BpuMI | CCSGG | 3 cut(s) | 389, 500, 1888 |
| Bsa29I | ATCGAT | 1 cut(s) | 1552 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1569 |
| BsaHI | GRCGYC | 1 cut(s) | 444 |
| BsaJI | CCNNGG | 5 cut(s) | 387, 498, 1035, 1053, 1574 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 158, 270, 1340, 1380 |
| Bse118I | RCCGGY | 1 cut(s) | 1191 |
| Bse1I | ACTGG | 3 cut(s) | 218, 640, 1526 |
| Bse3DI | GCAATG | 3 cut(s) | 712, 768, 1001 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1569 |
| BseCI | ATCGAT | 1 cut(s) | 1552 |
| BseDI | CCNNGG | 5 cut(s) | 387, 498, 1035, 1053, 1574 |
| BseGI | GGATG | 2 cut(s) | 1000, 1078 |
| BseJI | GATNNNNATC | 1 cut(s) | 1569 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 158, 270, 1340, 1380 |
| BseMI | GCAATG | 3 cut(s) | 712, 768, 1001 |
| BseMII | CTCAG | 5 cut(s) | 249, 372, 470, 1678, 1685 |
| BseNI | ACTGG | 3 cut(s) | 218, 640, 1526 |
| BseRI | GAGGAG | 2 cut(s) | 913, 1004 |
| BseXI | GCAGC | 3 cut(s) | 136, 1462, 1882 |
| BseYI | CCCAGC | 2 cut(s) | 607, 974 |
| Bsh1285I | CGRYCG | 1 cut(s) | 17 |
| BshFI | GGCC | 1 cut(s) | 1034 |
| BshNI | GGYRCC | 1 cut(s) | 1343 |
| BshVI | ATCGAT | 1 cut(s) | 1552 |
| BsiEI | CGRYCG | 1 cut(s) | 17 |
| BsiSI | CCGG | 4 cut(s) | 389, 500, 1192, 1887 |
| BslFI | GGGAC | 2 cut(s) | 370, 1012 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 158, 270, 1340, 1380 |
| BsmAI | GTCTC | 2 cut(s) | 1428, 1904 |
| BsmFI | GGGAC | 2 cut(s) | 370, 1012 |
| BsnI | GGCC | 1 cut(s) | 1034 |
| Bsp119I | TTCGAA | 3 cut(s) | 683, 1713, 1764 |
| Bsp1286I | GDGCHC | 1 cut(s) | 8 |
| Bsp143I | GATC | 7 cut(s) | 18, 625, 1553, 1570, 1585, 1611, 1768 |
| BspANI | GGCC | 1 cut(s) | 1034 |
| BspCNI | CTCAG | 5 cut(s) | 248, 373, 471, 1677, 1684 |
| BspDI | ATCGAT | 1 cut(s) | 1552 |
| BspLI | GGNNCC | 5 cut(s) | 7, 366, 933, 1345, 1524 |
| BspMI | ACCTGC | 1 cut(s) | 43 |
| BspPI | GGATC | 3 cut(s) | 1565, 1593, 1606 |
| BspT104I | TTCGAA | 3 cut(s) | 683, 1713, 1764 |
| BspT107I | GGYRCC | 1 cut(s) | 1343 |
| BsrBI | CCGCTC | 1 cut(s) | 880 |
| BsrDI | GCAATG | 3 cut(s) | 712, 768, 1001 |
| BsrFI | RCCGGY | 1 cut(s) | 1191 |
| BsrI | ACTGG | 3 cut(s) | 218, 640, 1526 |
| BssAI | RCCGGY | 1 cut(s) | 1191 |
| BssECI | CCNNGG | 5 cut(s) | 387, 498, 1035, 1053, 1574 |
| BssMI | GATC | 7 cut(s) | 18, 625, 1553, 1570, 1585, 1611, 1768 |
| BssNAI | GTATAC | 1 cut(s) | 1745 |
| BssNI | GRCGYC | 1 cut(s) | 444 |
| BssT1I | CCWWGG | 1 cut(s) | 1053 |
| Bst1107I | GTATAC | 1 cut(s) | 1745 |
| Bst4CI | ACNGT | 8 cut(s) | 98, 255, 598, 1126, 1231, 1348, 1705, 1749 |
| Bst6I | CTCTTC | 1 cut(s) | 1856 |
| BstACI | GRCGYC | 1 cut(s) | 444 |
| BstBI | TTCGAA | 3 cut(s) | 683, 1713, 1764 |
| BstC8I | GCNNGC | 1 cut(s) | 76 |
| BstDEI | CTNAG | 7 cut(s) | 39, 235, 381, 425, 479, 1664, 1671 |
| BstDSI | CCRYGG | 1 cut(s) | 1574 |
| BstF5I | GGATG | 2 cut(s) | 1000, 1078 |
| BstH2I | RGCGCY | 1 cut(s) | 1678 |
| BstHHI | GCGC | 5 cut(s) | 66, 166, 173, 1677, 1923 |
| BstKTI | GATC | 7 cut(s) | 21, 628, 1556, 1573, 1588, 1614, 1771 |
| BstMAI | GTCTC | 2 cut(s) | 1428, 1904 |
| BstMBI | GATC | 7 cut(s) | 18, 625, 1553, 1570, 1585, 1611, 1768 |
| BstMCI | CGRYCG | 1 cut(s) | 17 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 170, 773, 1136, 1876 |
| BstSCI | CCNGG | 3 cut(s) | 387, 498, 1886 |
| BstV1I | GCAGC | 3 cut(s) | 136, 1462, 1882 |
| BstV2I | GAAGAC | 1 cut(s) | 1361 |
| BstX2I | RGATCY | 2 cut(s) | 1585, 1768 |
| BstYI | RGATCY | 2 cut(s) | 1585, 1768 |
| BstZ17I | GTATAC | 1 cut(s) | 1745 |
| Bsu15I | ATCGAT | 1 cut(s) | 1552 |
| BsuRI | GGCC | 1 cut(s) | 1034 |
| BsuTUI | ATCGAT | 1 cut(s) | 1552 |
| BtgI | CCRYGG | 1 cut(s) | 1574 |
| BtgZI | GCGATG | 1 cut(s) | 172 |
| BtsCI | GGATG | 2 cut(s) | 1000, 1078 |
| BtsI | GCAGTG | 1 cut(s) | 166 |
| BtsIMutI | CAGTG | 6 cut(s) | 166, 378, 1131, 1533, 1549, 1722 |
| BveI | ACCTGC | 1 cut(s) | 43 |
| Cac8I | GCNNGC | 1 cut(s) | 76 |
| CfoI | GCGC | 5 cut(s) | 66, 166, 173, 1677, 1923 |
| Cfr10I | RCCGGY | 1 cut(s) | 1191 |
| Cfr13I | GGNCC | 1 cut(s) | 932 |
| ClaI | ATCGAT | 1 cut(s) | 1552 |
| Csp6I | GTAC | 3 cut(s) | 94, 251, 1344 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1525, 1560 |
| CviAII | CATG | 3 cut(s) | 60, 1079, 1843 |
| CviQI | GTAC | 3 cut(s) | 94, 251, 1344 |
| DdeI | CTNAG | 7 cut(s) | 39, 235, 381, 425, 479, 1664, 1671 |
| DpnI | GATC | 7 cut(s) | 20, 627, 1555, 1572, 1587, 1613, 1770 |
| DpnII | GATC | 7 cut(s) | 18, 625, 1553, 1570, 1585, 1611, 1768 |
| Eam1104I | CTCTTC | 1 cut(s) | 1856 |
| EarI | CTCTTC | 1 cut(s) | 1856 |
| EciI | GGCGGA | 1 cut(s) | 1659 |
| Eco130I | CCWWGG | 1 cut(s) | 1053 |
| Eco24I | GRGCYC | 1 cut(s) | 8 |
| Eco47I | GGWCC | 1 cut(s) | 932 |
| Eco57I | CTGAAG | 2 cut(s) | 1398, 1859 |
| EcoRI | GAATTC | 2 cut(s) | 907, 979 |
| EcoT14I | CCWWGG | 1 cut(s) | 1053 |
| EcoT38I | GRGCYC | 1 cut(s) | 8 |
| ErhI | CCWWGG | 1 cut(s) | 1053 |
| FaeI | CATG | 3 cut(s) | 63, 1082, 1846 |
| FaqI | GGGAC | 2 cut(s) | 370, 1012 |
| FatI | CATG | 3 cut(s) | 59, 1078, 1842 |
| FauI | CCCGC | 3 cut(s) | 151, 330, 1123 |
| FauNDI | CATATG | 1 cut(s) | 937 |
| FbaI | TGATCA | 1 cut(s) | 625 |
| FblI | GTMKAC | 1 cut(s) | 1744 |
| Fnu4HI | GCNGC | 5 cut(s) | 125, 174, 453, 1476, 1871 |
| FokI | GGATG | 2 cut(s) | 1007, 1085 |
| FriOI | GRGCYC | 1 cut(s) | 8 |
| Fsp4HI | GCNGC | 5 cut(s) | 125, 174, 453, 1476, 1871 |
| FspAI | RTGCGCAY | 1 cut(s) | 165 |
| FspBI | CTAG | 1 cut(s) | 1089 |
| FspI | TGCGCA | 1 cut(s) | 165 |
| GlaI | GCGC | 5 cut(s) | 65, 165, 172, 1676, 1922 |
| GluI | GCNGC | 5 cut(s) | 125, 174, 453, 1476, 1871 |
| GsaI | CCCAGC | 2 cut(s) | 611, 978 |
| HaeII | RGCGCY | 1 cut(s) | 1678 |
| HaeIII | GGCC | 1 cut(s) | 1034 |
| HapII | CCGG | 4 cut(s) | 389, 500, 1192, 1887 |
| HhaI | GCGC | 5 cut(s) | 66, 166, 173, 1677, 1923 |
| Hin1I | GRCGYC | 1 cut(s) | 444 |
| Hin1II | CATG | 3 cut(s) | 63, 1082, 1846 |
| Hin6I | GCGC | 5 cut(s) | 64, 164, 171, 1675, 1921 |
| HinP1I | GCGC | 5 cut(s) | 64, 164, 171, 1675, 1921 |
| HinfI | GANTC | 5 cut(s) | 383, 410, 1085, 1172, 1647 |
| HpaII | CCGG | 4 cut(s) | 389, 500, 1192, 1887 |
| HphI | GGTGA | 5 cut(s) | 24, 830, 1094, 1478, 1787 |
| Hpy166II | GTNNAC | 2 cut(s) | 55, 1745 |
| Hpy188III | TCNNGA | 7 cut(s) | 143, 347, 623, 629, 1351, 1392, 1445 |
| Hpy8I | GTNNAC | 2 cut(s) | 55, 1745 |
| Hpy99I | CGWCG | 4 cut(s) | 273, 364, 446, 449 |
| HpyAV | CCTTC | 7 cut(s) | 20, 353, 408, 452, 664, 799, 1373 |
| HpyCH4III | ACNGT | 8 cut(s) | 98, 255, 598, 1126, 1231, 1348, 1705, 1749 |
| HpyCH4IV | ACGT | 2 cut(s) | 51, 444 |
| HpyCH4V | TGCA | 6 cut(s) | 842, 895, 928, 1139, 1255, 1478 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 170, 773, 1136, 1876 |
| HpyF3I | CTNAG | 7 cut(s) | 39, 235, 381, 425, 479, 1664, 1671 |
| HpySE526I | ACGT | 2 cut(s) | 51, 444 |
| Hsp92I | GRCGYC | 1 cut(s) | 444 |
| Hsp92II | CATG | 3 cut(s) | 63, 1082, 1846 |
| HspAI | GCGC | 5 cut(s) | 64, 164, 171, 1675, 1921 |
| KpnI | GGTACC | 1 cut(s) | 1347 |
| Ksp22I | TGATCA | 1 cut(s) | 625 |
| Kzo9I | GATC | 7 cut(s) | 18, 625, 1553, 1570, 1585, 1611, 1768 |
| LmnI | GCTCC | 4 cut(s) | 11, 502, 554, 1316 |
| Lsp1109I | GCAGC | 3 cut(s) | 136, 1462, 1882 |
| LweI | GCATC | 3 cut(s) | 829, 1126, 1717 |
| MaeI | CTAG | 1 cut(s) | 1089 |
| MaeII | ACGT | 2 cut(s) | 51, 444 |
| MaeIII | GTNAC | 1 cut(s) | 391 |
| MalI | GATC | 7 cut(s) | 20, 627, 1555, 1572, 1587, 1613, 1770 |
| MbiI | CCGCTC | 1 cut(s) | 880 |
| MboI | GATC | 7 cut(s) | 18, 625, 1553, 1570, 1585, 1611, 1768 |
| MfeI | CAATTG | 1 cut(s) | 731 |
| MflI | RGATCY | 2 cut(s) | 1585, 1768 |
| MhlI | GDGCHC | 1 cut(s) | 8 |
| MlyI | GAGTC | 3 cut(s) | 392, 404, 1641 |
| MmeI | TCCRAC | 6 cut(s) | 438, 765, 853, 1149, 1563, 1731 |
| MseI | TTAA | 5 cut(s) | 546, 653, 1011, 1029, 1658 |
| MspA1I | CMGCKG | 2 cut(s) | 106, 1879 |
| MspI | CCGG | 4 cut(s) | 389, 500, 1192, 1887 |
| MspR9I | CCNGG | 3 cut(s) | 389, 500, 1888 |
| MunI | CAATTG | 1 cut(s) | 731 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 170, 773, 1136, 1876 |
| NciI | CCSGG | 3 cut(s) | 389, 500, 1888 |
| NdeI | CATATG | 1 cut(s) | 937 |
| NdeII | GATC | 7 cut(s) | 18, 625, 1553, 1570, 1585, 1611, 1768 |
| NlaIII | CATG | 3 cut(s) | 63, 1082, 1846 |
| NlaIV | GGNNCC | 5 cut(s) | 7, 366, 933, 1345, 1524 |
| NmeAIII | GCCGAG | 1 cut(s) | 1060 |
| NsbI | TGCGCA | 1 cut(s) | 165 |
| NspV | TTCGAA | 3 cut(s) | 683, 1713, 1764 |
| PaqCI | CACCTGC | 1 cut(s) | 43 |
| PfeI | GAWTC | 2 cut(s) | 1085, 1172 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1340 |
| PkrI | GCNGC | 5 cut(s) | 126, 175, 454, 1477, 1872 |
| PleI | GAGTC | 3 cut(s) | 391, 404, 1641 |
| PpsI | GAGTC | 3 cut(s) | 391, 404, 1641 |
| Psp1406I | AACGTT | 1 cut(s) | 51 |
| PspFI | CCCAGC | 2 cut(s) | 607, 974 |
| PspN4I | GGNNCC | 5 cut(s) | 7, 366, 933, 1345, 1524 |
| PspPI | GGNCC | 1 cut(s) | 932 |
| PsuI | RGATCY | 2 cut(s) | 1585, 1768 |
| PvuII | CAGCTG | 2 cut(s) | 106, 1879 |
| RsaI | GTAC | 3 cut(s) | 95, 252, 1345 |
| RsaNI | GTAC | 3 cut(s) | 94, 251, 1344 |
| SaqAI | TTAA | 5 cut(s) | 546, 653, 1011, 1029, 1658 |
| SatI | GCNGC | 5 cut(s) | 125, 174, 453, 1476, 1871 |
| Sau3AI | GATC | 7 cut(s) | 18, 625, 1553, 1570, 1585, 1611, 1768 |
| Sau96I | GGNCC | 1 cut(s) | 932 |
| SchI | GAGTC | 3 cut(s) | 392, 404, 1641 |
| ScrFI | CCNGG | 3 cut(s) | 389, 500, 1888 |
| SduI | GDGCHC | 1 cut(s) | 8 |
| SfaNI | GCATC | 3 cut(s) | 829, 1126, 1717 |
| SfuI | TTCGAA | 3 cut(s) | 683, 1713, 1764 |
| SinI | GGWCC | 1 cut(s) | 932 |
| SspMI | CTAG | 1 cut(s) | 1089 |
| StyD4I | CCNGG | 3 cut(s) | 387, 498, 1886 |
| StyI | CCWWGG | 1 cut(s) | 1053 |
| TaaI | ACNGT | 8 cut(s) | 98, 255, 598, 1126, 1231, 1348, 1705, 1749 |
| TaiI | ACGT | 2 cut(s) | 54, 447 |
| TaqI | TCGA | 9 cut(s) | 17, 313, 644, 662, 683, 861, 1552, 1713, 1764 |
| TaqII | GACCGA | 1 cut(s) | 450 |
| TatI | WGTACW | 1 cut(s) | 93 |
| TauI | GCSGC | 2 cut(s) | 176, 455 |
| TfiI | GAWTC | 2 cut(s) | 1085, 1172 |
| Tru1I | TTAA | 5 cut(s) | 546, 653, 1011, 1029, 1658 |
| Tru9I | TTAA | 5 cut(s) | 546, 653, 1011, 1029, 1658 |
| TscAI | CASTG | 6 cut(s) | 173, 385, 1131, 1533, 1549, 1729 |
| TseI | GCWGC | 3 cut(s) | 124, 1475, 1870 |
| TspDTI | ATGAA | 3 cut(s) | 837, 1200, 1859 |
| TspGWI | ACGGA | 7 cut(s) | 232, 238, 286, 377, 529, 1563, 1604 |
| TspRI | CASTG | 6 cut(s) | 173, 385, 1131, 1533, 1549, 1729 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1340 |
| VpaK11BI | GGWCC | 1 cut(s) | 932 |
| XapI | RAATTY | 6 cut(s) | 110, 524, 548, 907, 979, 1440 |
| XmiI | GTMKAC | 1 cut(s) | 1744 |
| XspI | CTAG | 1 cut(s) | 1089 |
| ZraI | GACGTC | 1 cut(s) | 445 |