MD13G1168100.v1.1

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0013202
Physical Location & Seq
Reverse (-)
13608286 .. 13611212
2927 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1168100.v1.1.491

Sequence Viewer

Length: 1788 bp
ATGGCGGGTGCGCACTGCGCCACCTCCCTTGTCATCGCACACCCAATCCACTCCACCGCCAAACCAGTCAAACCAATCCTCTCAGCCTCCGTTTCCGTACCGTCAAAACCCACCCGACGGAGAAACCATTTGCGCCCCAAAATCCTCAAAACCCTAACTCGACCCTACCCGCCACCCAAAACCCCTCTCCTTCCCGAACTACCCCCGACGGAGCCTGTAATTCCCATTGAGTCCCCGGTAACTCCTTCCGAGAACGACTCCAATACCGAACTTAGCTCTGACCGAAGCGACGTCGTTGCCGCAGAAGGCGATACAGTTGAAGAACTGAGCGTGTCTGTGACGACCCCCGAGCAAAATGGCATTGTTGGTAAATTTTCTGCCAAGTCCGTCCTTAAATTTGGGGCGTATGTGGTTGGGGCTTATTTGTTTCAGGCTTTTTTTACTGTTTGGTTGCTGGGAGATGATAATCCTGATCAGGAAACTGGGAAGTCGAAAACTTTAAGCAAATCGAAAGGGAAAGCTTTGTATTCGAATGTTGGGTCTGAATTGGGCAATGTGATTTCTTTGGACGAGATACAATTGGACGAGAGGATAGAGGAAATTAGAGCAATGGCGAGGGAAGCACGAAAGTCGGAGAAAAGGGAGTTGAAGAAGGGAAGTATCGGTGATGAAGATGATATTTCTGATGCAAGGAATAGAATAGGCATCGAAAAAGAGGTCGGAGAGCGGTTGGTTAGGTTGCAGAGGAGTTTGAATTCTAAAAGGGAGAAGTTGCAGGGTCCATATGTGAGTAATATGGAAAAGAATGAGAAAGTAGAAGATGGGAATTCTAAAGAGGAGGATGGGACATTGCTGTTTAAGAAAAAGGTCAAGTTTAAGGCCGAAGCGAAAAGCAATCCCAAGGGGTTTGGGGGTTTGGATGAGCATGGTGAATCTAGGAGGATAAAGAGAGGTTCGGGCGGTGTAGATACAGTGGCGGGAGATGCAAGTGTTGGTAGTGATGGTAAAGAATTGTTGGATTCGGATAATGGTGAAAACCAGCGAGAGAGTGATATTGGACAAGGTGTTTCCAAGACCGTAGAGGACGAACCCAAGTTGCAAAATGACGGGAACCATTTGGAGAAAGGAACTCGGAGTATGGATAGCGGAAACGACATAGGAGCTGGAACTATTGAGCCACAAAATGGTACCGTCCAGAAGAAAAGACGAGGGAAGTCCTCTGAAGGAGTAAAGTCAAGAAAATCAAGGGCGTTGGGGAAGAAAAAGTCTTCCTCAAAGAAAGAAATTCAGGAAACTACCATAAAATCTGGTGATAATGCTGTATTGAGTGTAAATGGCAGTTCAAAAAACAAAGAAGCTGAAAAGGAACCAGTGGCTAACAAAGTCAGTGGCAATCGATCAAAGAATGATATTGATCCGTGGTGGTTGGATCTTCCTTATGTTCTGGTTATTATGATCCGTAGAGGTTCTGGTAGCGAGGGGCAAGGCGGACTCTATACCTTAAAGCTCAGTTCTCAGCACCAAAGCCAGAGTGATTTTTCCTATACTGTCGCTTTCGAACACCGCACTGATGCCAATAACTTCTGTATACTATTGGAAACTTTTTTCGAAGATCTGGGTGATTTCAGGGCTGATATTGTTCCTTTACCAAACAAAGAACTTCGCGAAGCCATAAAGTCAGATAACATGAAGCTGATTTTTGTGAAGAGAGGGCAGCTTCAGCTGTATGCCGGGCAACCTTTTGAAGAAGTTGAGACAGCGTTGCGCTCTCTGGTTGAACAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3110

Protein Analysis

596

Amino Acids

65.24

Weight (kDa)

7.12

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15820
fragaria_vesca FvH4_4g18220
malus_domestica MD13G1168100.v1.1
prunus_persica Prupe.1G135700_v2.0.a1 Prupe.1G135700_v2.0.a1 Prupe.1G135700_v2.0.a1
pyrus_communis pycom13g14390
rosa_chinensis RchiOBHm_Chr4g0422351
rosa_laevigata RLG00000007617
rosa_multiflora Rmu_sc0013245.1_g000011
rosa_roxburghii Rroxscaffold_5G00364460 Rroxscaffold_5G00364470
rosa_rugosa Rorug04G0179300
rosa_samantha Rh4AG238700 Rh4BG242300 Rh4CG253800 Rh4DG237700
rosa_wichuraiana Rw4G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 294
Acc16I TGCGCA 1 cut(s) 12
Acc65I GGTACC 1 cut(s) 1187
AccB1I GGYRCC 1 cut(s) 1187
AccB7I CCANNNNNTGG 1 cut(s) 1184
AccBSI CCGCTC 1 cut(s) 727
AccI GTMKAC 1 cut(s) 1588
AccII CGCG 1 cut(s) 1665
AclWI GGATC 3 cut(s) 1409, 1437, 1450
AcsI RAATTY 5 cut(s) 371, 395, 754, 826, 1284
AcuI CTGAAG 2 cut(s) 1242, 1703
AcyI GRCGYC 1 cut(s) 291
AfaI GTAC 2 cut(s) 99, 1189
AfiI CCNNNNNNNGG 2 cut(s) 117, 1184
AgsI TTSAA 6 cut(s) 320, 649, 754, 1344, 1745, 1778
AluBI AGCT 8 cut(s) 276, 521, 1163, 1358, 1507, 1693, 1717, 1723
AluI AGCT 8 cut(s) 276, 521, 1163, 1358, 1507, 1693, 1717, 1723
Alw26I GTCTC 1 cut(s) 1748
AlwI GGATC 3 cut(s) 1409, 1437, 1450
Ama87I CYCGRG 1 cut(s) 347
AoxI GGCC 1 cut(s) 879
ApeKI GCWGC 1 cut(s) 1714
ApoI RAATTY 5 cut(s) 371, 395, 754, 826, 1284
ArsI GACNNNNNNTTYG 4 cut(s) 524, 556, 702, 734
Asp718I GGTACC 1 cut(s) 1187
AspLEI GCGC 4 cut(s) 13, 20, 135, 1767
AspS9I GGNCC 1 cut(s) 779
AsuC2I CCSGG 2 cut(s) 236, 1732
AsuHPI GGTGA 5 cut(s) 677, 941, 1043, 1322, 1631
AsuII TTCGAA 3 cut(s) 530, 1557, 1608
AvaI CYCGRG 1 cut(s) 347
AvaII GGWCC 1 cut(s) 779
BanI GGYRCC 1 cut(s) 1187
BbsI GAAGAC 1 cut(s) 1260
BbvI GCAGC 1 cut(s) 1726
BccI CCATC 3 cut(s) 815, 836, 995
BcgI CGANNNNNNTGC 4 cut(s) 278, 312, 612, 646
BclI TGATCA 1 cut(s) 472
BcnI CCSGG 2 cut(s) 236, 1732
BcoDI GTCTC 1 cut(s) 1748
BfaI CTAG 1 cut(s) 936
BglII AGATCT 1 cut(s) 1612
BisI GCNGC 2 cut(s) 300, 1715
BlsI GCNGC 2 cut(s) 301, 1716
Bme1390I CCNGG 2 cut(s) 236, 1732
Bme18I GGWCC 1 cut(s) 779
BmeT110I CYCGRG 1 cut(s) 347
BmgT120I GGNCC 1 cut(s) 779
BmiI GGNNCC 5 cut(s) 213, 780, 1112, 1189, 1368
BmrFI CCNGG 2 cut(s) 236, 1732
BmrI ACTGGG 1 cut(s) 492
BmsI GCATC 4 cut(s) 676, 714, 973, 1561
BmuI ACTGGG 1 cut(s) 492
BpiI GAAGAC 1 cut(s) 1260
BplI GAGNNNNNCTC 2 cut(s) 242, 274
Bpu14I TTCGAA 3 cut(s) 530, 1557, 1608
BpuMI CCSGG 2 cut(s) 236, 1732
Bsa29I ATCGAT 1 cut(s) 1396
BsaBI GATNNNNATC 2 cut(s) 465, 1413
BsaHI GRCGYC 1 cut(s) 291
BsaJI CCNNGG 3 cut(s) 234, 900, 1418
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 1184
Bse1I ACTGG 3 cut(s) 65, 487, 1370
Bse3DI GCAATG 3 cut(s) 559, 615, 848
Bse8I GATNNNNATC 2 cut(s) 465, 1413
BseCI ATCGAT 1 cut(s) 1396
BseDI CCNNGG 3 cut(s) 234, 900, 1418
BseGI GGATG 2 cut(s) 847, 925
BseJI GATNNNNATC 2 cut(s) 465, 1413
BseLI CCNNNNNNNGG 2 cut(s) 117, 1184
BseMI GCAATG 3 cut(s) 559, 615, 848
BseMII CTCAG 4 cut(s) 96, 317, 1522, 1529
BseNI ACTGG 3 cut(s) 65, 487, 1370
BseRI GAGGAG 2 cut(s) 760, 851
BseXI GCAGC 1 cut(s) 1726
BseYI CCCAGC 1 cut(s) 454
Bsh1236I CGCG 1 cut(s) 1665
BshFI GGCC 1 cut(s) 881
BshNI GGYRCC 1 cut(s) 1187
BshVI ATCGAT 1 cut(s) 1396
BsiHKCI CYCGRG 1 cut(s) 347
BsiSI CCGG 2 cut(s) 236, 1731
BslFI GGGAC 2 cut(s) 217, 859
BslI CCNNNNNNNGG 2 cut(s) 117, 1184
BsmAI GTCTC 1 cut(s) 1748
BsmFI GGGAC 2 cut(s) 217, 859
BsnI GGCC 1 cut(s) 881
BsoBI CYCGRG 1 cut(s) 347
Bsp119I TTCGAA 3 cut(s) 530, 1557, 1608
Bsp143I GATC 6 cut(s) 472, 1397, 1414, 1429, 1455, 1612
Bsp68I TCGCGA 1 cut(s) 1665
BspANI GGCC 1 cut(s) 881
BspCNI CTCAG 4 cut(s) 95, 318, 1521, 1528
BspDI ATCGAT 1 cut(s) 1396
BspFNI CGCG 1 cut(s) 1665
BspLI GGNNCC 5 cut(s) 213, 780, 1112, 1189, 1368
BspPI GGATC 3 cut(s) 1409, 1437, 1450
BspT104I TTCGAA 3 cut(s) 530, 1557, 1608
BspT107I GGYRCC 1 cut(s) 1187
BsrBI CCGCTC 1 cut(s) 727
BsrDI GCAATG 3 cut(s) 559, 615, 848
BsrI ACTGG 3 cut(s) 65, 487, 1370
BssECI CCNNGG 3 cut(s) 234, 900, 1418
BssMI GATC 6 cut(s) 472, 1397, 1414, 1429, 1455, 1612
BssNAI GTATAC 1 cut(s) 1589
BssNI GRCGYC 1 cut(s) 291
BssT1I CCWWGG 1 cut(s) 900
Bst1107I GTATAC 1 cut(s) 1589
Bst4CI ACNGT 7 cut(s) 102, 316, 445, 973, 1078, 1192, 1549
Bst6I CTCTTC 1 cut(s) 1700
BstACI GRCGYC 1 cut(s) 291
BstBI TTCGAA 3 cut(s) 530, 1557, 1608
BstDEI CTNAG 5 cut(s) 82, 272, 326, 1508, 1515
BstDSI CCRYGG 1 cut(s) 1418
BstF5I GGATG 2 cut(s) 847, 925
BstFNI CGCG 1 cut(s) 1665
BstHHI GCGC 4 cut(s) 13, 20, 135, 1767
BstKTI GATC 6 cut(s) 475, 1400, 1417, 1432, 1458, 1615
BstMAI GTCTC 1 cut(s) 1748
BstMBI GATC 6 cut(s) 472, 1397, 1414, 1429, 1455, 1612
BstMWI GCNNNNNNNGC 4 cut(s) 17, 620, 983, 1720
BstSCI CCNGG 2 cut(s) 234, 1730
BstUI CGCG 1 cut(s) 1665
BstV1I GCAGC 1 cut(s) 1726
BstV2I GAAGAC 1 cut(s) 1260
BstX2I RGATCY 2 cut(s) 1429, 1612
BstYI RGATCY 2 cut(s) 1429, 1612
BstZ17I GTATAC 1 cut(s) 1589
Bsu15I ATCGAT 1 cut(s) 1396
BsuRI GGCC 1 cut(s) 881
BsuTUI ATCGAT 1 cut(s) 1396
BtgI CCRYGG 1 cut(s) 1418
BtgZI GCGATG 1 cut(s) 19
BtsCI GGATG 2 cut(s) 847, 925
BtsI GCAGTG 1 cut(s) 13
BtsIMutI CAGTG 5 cut(s) 13, 978, 1377, 1393, 1566
BtuMI TCGCGA 1 cut(s) 1665
CfoI GCGC 4 cut(s) 13, 20, 135, 1767
Cfr13I GGNCC 1 cut(s) 779
ClaI ATCGAT 1 cut(s) 1396
Csp6I GTAC 2 cut(s) 98, 1188
CspCI CAANNNNNGTGG 4 cut(s) 10, 45, 1369, 1404
CviAII CATG 2 cut(s) 926, 1687
CviQI GTAC 2 cut(s) 98, 1188
DdeI CTNAG 5 cut(s) 82, 272, 326, 1508, 1515
DpnI GATC 6 cut(s) 474, 1399, 1416, 1431, 1457, 1614
DpnII GATC 6 cut(s) 472, 1397, 1414, 1429, 1455, 1612
Eam1104I CTCTTC 1 cut(s) 1700
EarI CTCTTC 1 cut(s) 1700
EciI GGCGGA 1 cut(s) 1503
Eco130I CCWWGG 1 cut(s) 900
Eco47I GGWCC 1 cut(s) 779
Eco57I CTGAAG 2 cut(s) 1242, 1703
Eco88I CYCGRG 1 cut(s) 347
EcoRI GAATTC 2 cut(s) 754, 826
EcoT14I CCWWGG 1 cut(s) 900
ErhI CCWWGG 1 cut(s) 900
FaeI CATG 2 cut(s) 929, 1690
FaqI GGGAC 2 cut(s) 217, 859
FatI CATG 2 cut(s) 925, 1686
FauI CCCGC 2 cut(s) 177, 970
FauNDI CATATG 1 cut(s) 784
FbaI TGATCA 1 cut(s) 472
FblI GTMKAC 1 cut(s) 1588
Fnu4HI GCNGC 2 cut(s) 300, 1715
FokI GGATG 2 cut(s) 854, 932
Fsp4HI GCNGC 2 cut(s) 300, 1715
FspAI RTGCGCAY 1 cut(s) 12
FspBI CTAG 1 cut(s) 936
FspI TGCGCA 1 cut(s) 12
GlaI GCGC 4 cut(s) 12, 19, 134, 1766
GluI GCNGC 2 cut(s) 300, 1715
GsaI CCCAGC 1 cut(s) 458
HaeIII GGCC 1 cut(s) 881
HapII CCGG 2 cut(s) 236, 1731
HhaI GCGC 4 cut(s) 13, 20, 135, 1767
Hin1I GRCGYC 1 cut(s) 291
Hin1II CATG 2 cut(s) 929, 1690
Hin6I GCGC 4 cut(s) 11, 18, 133, 1765
HinP1I GCGC 4 cut(s) 11, 18, 133, 1765
HindIII AAGCTT 1 cut(s) 519
HinfI GANTC 5 cut(s) 230, 257, 932, 1019, 1491
HpaII CCGG 2 cut(s) 236, 1731
HphI GGTGA 5 cut(s) 677, 941, 1043, 1322, 1631
Hpy166II GTNNAC 1 cut(s) 1589
Hpy188III TCNNGA 7 cut(s) 194, 470, 476, 1195, 1236, 1289, 1664
Hpy8I GTNNAC 1 cut(s) 1589
Hpy99I CGWCG 4 cut(s) 120, 211, 293, 296
HpyAV CCTTC 5 cut(s) 200, 255, 299, 646, 1217
HpyCH4III ACNGT 7 cut(s) 102, 316, 445, 973, 1078, 1192, 1549
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 5 cut(s) 689, 742, 775, 986, 1099
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 620, 983, 1720
HpyF3I CTNAG 5 cut(s) 82, 272, 326, 1508, 1515
HpySE526I ACGT 1 cut(s) 291
Hsp92I GRCGYC 1 cut(s) 291
Hsp92II CATG 2 cut(s) 929, 1690
HspAI GCGC 4 cut(s) 11, 18, 133, 1765
KpnI GGTACC 1 cut(s) 1191
Ksp22I TGATCA 1 cut(s) 472
Kzo9I GATC 6 cut(s) 472, 1397, 1414, 1429, 1455, 1612
LmnI GCTCC 2 cut(s) 211, 1160
Lsp1109I GCAGC 1 cut(s) 1726
LweI GCATC 4 cut(s) 676, 714, 973, 1561
MaeI CTAG 1 cut(s) 936
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 2 cut(s) 238, 337
MalI GATC 6 cut(s) 474, 1399, 1416, 1431, 1457, 1614
MbiI CCGCTC 1 cut(s) 727
MboI GATC 6 cut(s) 472, 1397, 1414, 1429, 1455, 1612
MfeI CAATTG 1 cut(s) 578
MflI RGATCY 2 cut(s) 1429, 1612
MlyI GAGTC 3 cut(s) 239, 251, 1485
MmeI TCCRAC 4 cut(s) 612, 700, 996, 1407
MseI TTAA 5 cut(s) 393, 500, 858, 876, 1502
MspA1I CMGCKG 1 cut(s) 1723
MspI CCGG 2 cut(s) 236, 1731
MspR9I CCNGG 2 cut(s) 236, 1732
MunI CAATTG 1 cut(s) 578
MvnI CGCG 1 cut(s) 1665
MwoI GCNNNNNNNGC 4 cut(s) 17, 620, 983, 1720
NciI CCSGG 2 cut(s) 236, 1732
NdeI CATATG 1 cut(s) 784
NdeII GATC 6 cut(s) 472, 1397, 1414, 1429, 1455, 1612
NlaIII CATG 2 cut(s) 929, 1690
NlaIV GGNNCC 5 cut(s) 213, 780, 1112, 1189, 1368
NmuCI GTSAC 1 cut(s) 337
NruI TCGCGA 1 cut(s) 1665
NsbI TGCGCA 1 cut(s) 12
NspV TTCGAA 3 cut(s) 530, 1557, 1608
PfeI GAWTC 2 cut(s) 932, 1019
PflMI CCANNNNNTGG 1 cut(s) 1184
PkrI GCNGC 2 cut(s) 301, 1716
PleI GAGTC 3 cut(s) 238, 251, 1485
PpsI GAGTC 3 cut(s) 238, 251, 1485
PspFI CCCAGC 1 cut(s) 454
PspN4I GGNNCC 5 cut(s) 213, 780, 1112, 1189, 1368
PspPI GGNCC 1 cut(s) 779
PsuI RGATCY 2 cut(s) 1429, 1612
PvuII CAGCTG 1 cut(s) 1723
RruI TCGCGA 1 cut(s) 1665
RsaI GTAC 2 cut(s) 99, 1189
RsaNI GTAC 2 cut(s) 98, 1188
SaqAI TTAA 5 cut(s) 393, 500, 858, 876, 1502
SatI GCNGC 2 cut(s) 300, 1715
Sau3AI GATC 6 cut(s) 472, 1397, 1414, 1429, 1455, 1612
Sau96I GGNCC 1 cut(s) 779
SchI GAGTC 3 cut(s) 239, 251, 1485
ScrFI CCNGG 2 cut(s) 236, 1732
SfaNI GCATC 4 cut(s) 676, 714, 973, 1561
SfuI TTCGAA 3 cut(s) 530, 1557, 1608
SinI GGWCC 1 cut(s) 779
SspMI CTAG 1 cut(s) 936
StyD4I CCNGG 2 cut(s) 234, 1730
StyI CCWWGG 1 cut(s) 900
TaaI ACNGT 7 cut(s) 102, 316, 445, 973, 1078, 1192, 1549
TaiI ACGT 1 cut(s) 294
TaqI TCGA 8 cut(s) 160, 491, 509, 530, 708, 1396, 1557, 1608
TaqII GACCGA 1 cut(s) 297
TauI GCSGC 1 cut(s) 302
TfiI GAWTC 2 cut(s) 932, 1019
Tru1I TTAA 5 cut(s) 393, 500, 858, 876, 1502
Tru9I TTAA 5 cut(s) 393, 500, 858, 876, 1502
TscAI CASTG 5 cut(s) 20, 978, 1377, 1393, 1573
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 1 cut(s) 1714
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 2 cut(s) 684, 1703
TspGWI ACGGA 7 cut(s) 79, 85, 133, 224, 376, 1407, 1448
TspRI CASTG 5 cut(s) 20, 978, 1377, 1393, 1573
Van91I CCANNNNNTGG 1 cut(s) 1184
VpaK11BI GGWCC 1 cut(s) 779
XapI RAATTY 5 cut(s) 371, 395, 754, 826, 1284
XmiI GTMKAC 1 cut(s) 1588
XspI CTAG 1 cut(s) 936
ZraI GACGTC 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.