Rh4DG237700

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0013202
Physical Location & Seq
Forward (+)
44508373 .. 44511947
3575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG237700.1

Sequence Viewer

Length: 1416 bp
ATGGCGGGTGCGCGTCTTTGCGCCACCTTCCCCAATCTCGCACACCCAATCTTACCCGCCACCACCCCGCCCAAAATTCCTGTATCAGCCTCCGTTTCCGTACCGTCAAAAATCACTCGCCGGAAGAACTATTTGCGCCCCAAAATTCTCAAAACCCTAAACCCTAAACCCGATCCGCAACCCGCACAGCCCGTAGTTCCTGTCGAATCTCCAGTAACGCCATCCCAAGATAACCATGAGCTCGAGCATAGCTCCGACCGAGGCGACGTCGCTTTGGGAGGAGGAGCTGAAGTCGAAGAATTAAGAGTGTCCGAGACGACGGCGGAGCTCCGTGGCATTTCTGGTAAATTTTCTGCGAGGACTGTGCTAAAGTATGGGGGTTATTTTATTGGGCTTTTTGTGCTACAGACTGTTGTTTCTGTTTTGTTATTGGGAGATAGTGATCCTGATGAAAATAGCAAGTCTAGGAGTTCAGTATTAGGCAAATCCAATTTGAAGACGAGTTCTGGGTCTGAGTTAGGCAATGTGGTTCGGTTTGATGAGTCCCAATTGGGAGAGAAAATTGAAGAGATTAGGGCAATGGCAAGGAAAGCGCGAAAGATTGAGAAGAATGAGTCCAAGGGAAGTATTGGAAATGAGGATGATGCATTTTCGAAGTCTAAGAACAAGATTGGGATTGAAAAGGAGGTTGGGAACCGGTTGGTTAACTTGCAGAAGAGGTTGGGTTCCAAAAGGGAGAAGTTGCCAGGTTCGTTTGTGAATTTTCTGGAAATGTTTGGGAAGTTTGAAGACGGGGTGAGGAAGAATAATGAGAATGTGAAGGAGGGGGATGGGGCGTTGATGTTTAAGAAGAAGCTGAAGTTTAAGACTCCTACTGCTGAGGTGAATAGGAATCCAAAGGGTTTTGGAGGTGTCAAAGAGGAAGGTGGTTCTAGTAAGAGTAAGAGAGGTTCAGGTGGTGTAGATGAAATTGGGAGAAATGCAAGTGTTGGTACTGATGGTATGGAATTGCTGGAAGCTGATGCTAAGGAGAAGCCGCGAGAGACTTTGGAGAAAGGAACAGGGAGATTAGATGAAGGACAGGACAGAGAAGCTGGAAATATGGTACCGCAGAATGGTACTGTCCACAGGACTATACAGGGGAGATCATCTGCTGAAGATGTAAAGTCAATCAAACCAAGAGGCTTCGGGAAGAAAAACCCTGAAAGCTTGAAGAAAGAAATTCAGGGAAGGACAGTAGAATCAGATGGTCCTACCGTGCAGAGTGTGAATAGCAGTTCAACACATAAAAAAGCCAAAAAACAAGCACTGGCTAACAAAGTCAGTAGTAAGCAGTCAGATAATGAGACTGATCCATGGTGGTTGCATCTTCCTTATGTTCTAGTATGTAGTCAGCTTCTATATCTTAGTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3110

Protein Analysis

471

Amino Acids

51.18

Weight (kDa)

9.51

Isoelectric Point (pI)

40.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15820
fragaria_vesca FvH4_4g18220
malus_domestica MD13G1168100.v1.1
prunus_persica Prupe.1G135700_v2.0.a1 Prupe.1G135700_v2.0.a1 Prupe.1G135700_v2.0.a1
pyrus_communis pycom13g14390
rosa_chinensis RchiOBHm_Chr4g0422351
rosa_laevigata RLG00000007617
rosa_multiflora Rmu_sc0013245.1_g000011
rosa_roxburghii Rroxscaffold_5G00364460 Rroxscaffold_5G00364470
rosa_rugosa Rorug04G0179300
rosa_samantha Rh4AG238700 Rh4BG242300 Rh4CG253800 Rh4DG237700
rosa_wichuraiana Rw4G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 270
Acc65I GGTACC 1 cut(s) 1105
AccB1I GGYRCC 1 cut(s) 1105
AccII CGCG 3 cut(s) 13, 595, 1039
AciI CCGC 8 cut(s) 5, 57, 68, 176, 183, 323, 1037, 1109
AclWI GGATC 3 cut(s) 167, 437, 1346
AcsI RAATTY 5 cut(s) 75, 144, 347, 760, 1221
AcuI CTGAAG 3 cut(s) 309, 878, 1176
AcyI GRCGYC 1 cut(s) 267
AfaI GTAC 4 cut(s) 102, 994, 1107, 1120
AfiI CCNNNNNNNGG 1 cut(s) 1115
AgeI ACCGGT 1 cut(s) 696
AgsI TTSAA 6 cut(s) 496, 566, 680, 788, 1213, 1281
AjnI CCWGG 1 cut(s) 745
AjuI GAANNNNNNNTTGG 2 cut(s) 672, 704
AluBI AGCT 9 cut(s) 241, 252, 287, 328, 856, 1019, 1094, 1209, 1396
AluI AGCT 9 cut(s) 241, 252, 287, 328, 856, 1019, 1094, 1209, 1396
Alw21I GWGCWC 2 cut(s) 243, 330
Alw26I GTCTC 3 cut(s) 308, 1037, 1340
AlwI GGATC 3 cut(s) 167, 437, 1346
Ama87I CYCGRG 1 cut(s) 242
ApoI RAATTY 5 cut(s) 75, 144, 347, 760, 1221
AsiGI ACCGGT 1 cut(s) 696
Asp718I GGTACC 1 cut(s) 1105
AspLEI GCGC 4 cut(s) 13, 23, 138, 595
AspS9I GGNCC 1 cut(s) 1250
AsuHPI GGTGA 2 cut(s) 808, 895
AsuII TTCGAA 1 cut(s) 653
AvaI CYCGRG 1 cut(s) 242
AvaII GGWCC 1 cut(s) 1250
BanI GGYRCC 1 cut(s) 1105
BanII GRGCYC 2 cut(s) 243, 330
BbsI GAAGAC 2 cut(s) 503, 795
Bbv12I GWGCWC 2 cut(s) 243, 330
BbvCI CCTCAGC 1 cut(s) 879
BccI CCATC 4 cut(s) 229, 824, 992, 1241
BceAI ACGGC 1 cut(s) 336
BcgI CGANNNNNNTGC 2 cut(s) 346, 380
BciT130I CCWGG 1 cut(s) 747
BcoDI GTCTC 3 cut(s) 308, 1037, 1340
BfaI CTAG 3 cut(s) 465, 933, 1382
BfmI CTRYAG 1 cut(s) 404
BisI GCNGC 1 cut(s) 1037
BlsI GCNGC 1 cut(s) 1038
Bme1390I CCNGG 1 cut(s) 747
Bme18I GGWCC 1 cut(s) 1250
BmeT110I CYCGRG 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 1250
BmiI GGNNCC 3 cut(s) 695, 727, 1107
BmrFI CCNGG 1 cut(s) 747
BmsI GCATC 3 cut(s) 634, 1012, 1375
BpiI GAAGAC 2 cut(s) 503, 795
BplI GAGNNNNNCTC 2 cut(s) 236, 268
BpmI CTGGAG 1 cut(s) 195
Bpu10I CCTNAGC 2 cut(s) 879, 1026
Bpu14I TTCGAA 1 cut(s) 653
BsaBI GATNNNNATC 1 cut(s) 441
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 4 cut(s) 259, 331, 618, 1355
BsaWI WCCGGW 1 cut(s) 696
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bsc4I CCNNNNNNNGG 1 cut(s) 1115
Bse118I RCCGGY 1 cut(s) 696
Bse1I ACTGG 2 cut(s) 212, 1314
Bse3DI GCAATG 2 cut(s) 529, 585
Bse8I GATNNNNATC 1 cut(s) 441
BseBI CCWGG 1 cut(s) 747
BseDI CCNNGG 4 cut(s) 259, 331, 618, 1355
BseGI GGATG 3 cut(s) 221, 646, 835
BseJI GATNNNNATC 1 cut(s) 441
BseLI CCNNNNNNNGG 1 cut(s) 1115
BseMI GCAATG 2 cut(s) 529, 585
BseMII CTCAG 2 cut(s) 504, 870
BseNI ACTGG 2 cut(s) 212, 1314
BseRI GAGGAG 2 cut(s) 294, 297
BsgI GTGCAG 1 cut(s) 1280
Bsh1236I CGCG 3 cut(s) 13, 595, 1039
Bsh1285I CGRYCG 1 cut(s) 259
BshNI GGYRCC 1 cut(s) 1105
BshTI ACCGGT 1 cut(s) 696
BsiEI CGRYCG 1 cut(s) 259
BsiHKAI GWGCWC 2 cut(s) 243, 330
BsiHKCI CYCGRG 1 cut(s) 242
BsiSI CCGG 2 cut(s) 121, 697
BslFI GGGAC 1 cut(s) 529
BslI CCNNNNNNNGG 1 cut(s) 1115
BsmAI GTCTC 3 cut(s) 308, 1037, 1340
BsmBI CGTCTC 1 cut(s) 308
BsmFI GGGAC 1 cut(s) 529
BsoBI CYCGRG 1 cut(s) 242
Bsp119I TTCGAA 1 cut(s) 653
Bsp1286I GDGCHC 2 cut(s) 243, 330
Bsp143I GATC 4 cut(s) 172, 442, 1145, 1351
Bsp19I CCATGG 1 cut(s) 1355
BspACI CCGC 8 cut(s) 5, 57, 68, 176, 183, 323, 1037, 1109
BspCNI CTCAG 2 cut(s) 505, 871
BspFNI CGCG 3 cut(s) 13, 595, 1039
BspLI GGNNCC 3 cut(s) 695, 727, 1107
BspPI GGATC 3 cut(s) 167, 437, 1346
BspT104I TTCGAA 1 cut(s) 653
BspT107I GGYRCC 1 cut(s) 1105
BsrDI GCAATG 2 cut(s) 529, 585
BsrFI RCCGGY 1 cut(s) 696
BsrI ACTGG 2 cut(s) 212, 1314
BssAI RCCGGY 1 cut(s) 696
BssECI CCNNGG 4 cut(s) 259, 331, 618, 1355
BssMI GATC 4 cut(s) 172, 442, 1145, 1351
BssNI GRCGYC 1 cut(s) 267
BssT1I CCWWGG 2 cut(s) 618, 1355
Bst2UI CCWGG 1 cut(s) 747
Bst4CI ACNGT 6 cut(s) 105, 364, 412, 1123, 1237, 1258
Bst6I CTCTTC 2 cut(s) 561, 710
BstACI GRCGYC 1 cut(s) 267
BstBI TTCGAA 1 cut(s) 653
BstDEI CTNAG 5 cut(s) 513, 660, 879, 1026, 1406
BstDSI CCRYGG 2 cut(s) 331, 1355
BstF5I GGATG 3 cut(s) 221, 646, 835
BstFNI CGCG 3 cut(s) 13, 595, 1039
BstHHI GCGC 4 cut(s) 13, 23, 138, 595
BstKTI GATC 4 cut(s) 175, 445, 1148, 1354
BstMAI GTCTC 3 cut(s) 308, 1037, 1340
BstMBI GATC 4 cut(s) 172, 442, 1145, 1351
BstMCI CGRYCG 1 cut(s) 259
BstMWI GCNNNNNNNGC 2 cut(s) 400, 590
BstNI CCWGG 1 cut(s) 747
BstSCI CCNGG 1 cut(s) 745
BstSFI CTRYAG 1 cut(s) 404
BstUI CGCG 3 cut(s) 13, 595, 1039
BstV2I GAAGAC 2 cut(s) 503, 795
BtgI CCRYGG 2 cut(s) 331, 1355
BtsCI GGATG 3 cut(s) 221, 646, 835
BtsIMutI CAGTG 1 cut(s) 1307
CfoI GCGC 4 cut(s) 13, 23, 138, 595
Cfr10I RCCGGY 1 cut(s) 696
Cfr13I GGNCC 1 cut(s) 1250
CseI GACGC 1 cut(s) 2
Csp6I GTAC 4 cut(s) 101, 993, 1106, 1119
CspAI ACCGGT 1 cut(s) 696
CviAII CATG 2 cut(s) 236, 1356
CviQI GTAC 4 cut(s) 101, 993, 1106, 1119
DdeI CTNAG 5 cut(s) 513, 660, 879, 1026, 1406
DpnI GATC 4 cut(s) 174, 444, 1147, 1353
DpnII GATC 4 cut(s) 172, 442, 1145, 1351
Eam1104I CTCTTC 2 cut(s) 561, 710
EarI CTCTTC 2 cut(s) 561, 710
EciI GGCGGA 1 cut(s) 338
Ecl136II GAGCTC 2 cut(s) 241, 328
Eco130I CCWWGG 2 cut(s) 618, 1355
Eco24I GRGCYC 2 cut(s) 243, 330
Eco47I GGWCC 1 cut(s) 1250
Eco53kI GAGCTC 2 cut(s) 241, 328
Eco57I CTGAAG 3 cut(s) 309, 878, 1176
Eco88I CYCGRG 1 cut(s) 242
EcoICRI GAGCTC 2 cut(s) 241, 328
EcoRII CCWGG 1 cut(s) 745
EcoT14I CCWWGG 2 cut(s) 618, 1355
EcoT22I ATGCAT 1 cut(s) 649
EcoT38I GRGCYC 2 cut(s) 243, 330
ErhI CCWWGG 2 cut(s) 618, 1355
Esp3I CGTCTC 1 cut(s) 308
FaeI CATG 2 cut(s) 239, 1359
FaqI GGGAC 1 cut(s) 529
FatI CATG 2 cut(s) 235, 1355
FauI CCCGC 3 cut(s) 64, 75, 190
Fnu4HI GCNGC 1 cut(s) 1037
FokI GGATG 3 cut(s) 208, 653, 842
FriOI GRGCYC 2 cut(s) 243, 330
Fsp4HI GCNGC 1 cut(s) 1037
FspBI CTAG 3 cut(s) 465, 933, 1382
GlaI GCGC 4 cut(s) 12, 22, 137, 594
GluI GCNGC 1 cut(s) 1037
GsuI CTGGAG 1 cut(s) 195
HapII CCGG 2 cut(s) 121, 697
HgaI GACGC 1 cut(s) 2
HhaI GCGC 4 cut(s) 13, 23, 138, 595
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 2 cut(s) 239, 1359
Hin6I GCGC 4 cut(s) 11, 21, 136, 593
HinP1I GCGC 4 cut(s) 11, 21, 136, 593
HincII GTYRAC 1 cut(s) 706
HindII GTYRAC 1 cut(s) 706
HindIII AAGCTT 1 cut(s) 1207
HinfI GANTC 6 cut(s) 206, 542, 614, 868, 892, 1241
HpaI GTTAAC 1 cut(s) 706
HpaII CCGG 2 cut(s) 121, 697
HphI GGTGA 2 cut(s) 808, 895
Hpy166II GTNNAC 2 cut(s) 706, 1126
Hpy188I TCNGA 5 cut(s) 256, 313, 514, 1246, 1339
Hpy188III TCNNGA 3 cut(s) 446, 767, 1189
Hpy8I GTNNAC 2 cut(s) 706, 1126
Hpy99I CGWCG 3 cut(s) 269, 272, 322
HpyAV CCTTC 5 cut(s) 37, 814, 917, 1070, 1224
HpyCH4III ACNGT 6 cut(s) 105, 364, 412, 1123, 1237, 1258
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 5 cut(s) 647, 712, 983, 1261, 1366
HpyF10VI GCNNNNNNNGC 2 cut(s) 400, 590
HpyF3I CTNAG 5 cut(s) 513, 660, 879, 1026, 1406
HpySE526I ACGT 1 cut(s) 267
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 2 cut(s) 239, 1359
HspAI GCGC 4 cut(s) 11, 21, 136, 593
KpnI GGTACC 1 cut(s) 1109
KspAI GTTAAC 1 cut(s) 706
Kzo9I GATC 4 cut(s) 172, 442, 1145, 1351
LmnI GCTCC 4 cut(s) 257, 284, 325, 333
LweI GCATC 3 cut(s) 634, 1012, 1375
MaeI CTAG 3 cut(s) 465, 933, 1382
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 214
MalI GATC 4 cut(s) 174, 444, 1147, 1353
MboI GATC 4 cut(s) 172, 442, 1145, 1351
MfeI CAATTG 1 cut(s) 548
MhlI GDGCHC 2 cut(s) 243, 330
MlyI GAGTC 3 cut(s) 551, 623, 862
MmeI TCCRAC 1 cut(s) 279
Mph1103I ATGCAT 1 cut(s) 649
MseI TTAA 4 cut(s) 302, 705, 846, 864
MspI CCGG 2 cut(s) 121, 697
MspR9I CCNGG 1 cut(s) 747
MunI CAATTG 1 cut(s) 548
MvaI CCWGG 1 cut(s) 747
MvnI CGCG 3 cut(s) 13, 595, 1039
MwoI GCNNNNNNNGC 2 cut(s) 400, 590
NcoI CCATGG 1 cut(s) 1355
NdeII GATC 4 cut(s) 172, 442, 1145, 1351
NlaIII CATG 2 cut(s) 239, 1359
NlaIV GGNNCC 3 cut(s) 695, 727, 1107
NsiI ATGCAT 1 cut(s) 649
NspV TTCGAA 1 cut(s) 653
PaeR7I CTCGAG 1 cut(s) 242
PfeI GAWTC 3 cut(s) 206, 892, 1241
PinAI ACCGGT 1 cut(s) 696
PkrI GCNGC 1 cut(s) 1038
PleI GAGTC 3 cut(s) 550, 622, 862
PpsI GAGTC 3 cut(s) 550, 622, 862
Psp124BI GAGCTC 2 cut(s) 243, 330
Psp6I CCWGG 1 cut(s) 745
PspGI CCWGG 1 cut(s) 745
PspN4I GGNNCC 3 cut(s) 695, 727, 1107
PspPI GGNCC 1 cut(s) 1250
PspXI VCTCGAGB 1 cut(s) 242
PsrI GAACNNNNNNTAC 2 cut(s) 934, 966
RsaI GTAC 4 cut(s) 102, 994, 1107, 1120
RsaNI GTAC 4 cut(s) 101, 993, 1106, 1119
SacI GAGCTC 2 cut(s) 243, 330
SaqAI TTAA 4 cut(s) 302, 705, 846, 864
SatI GCNGC 1 cut(s) 1037
Sau3AI GATC 4 cut(s) 172, 442, 1145, 1351
Sau96I GGNCC 1 cut(s) 1250
SchI GAGTC 3 cut(s) 551, 623, 862
ScrFI CCNGG 1 cut(s) 747
SduI GDGCHC 2 cut(s) 243, 330
SfaNI GCATC 3 cut(s) 634, 1012, 1375
SfcI CTRYAG 1 cut(s) 404
Sfr274I CTCGAG 1 cut(s) 242
SfuI TTCGAA 1 cut(s) 653
SinI GGWCC 1 cut(s) 1250
SlaI CTCGAG 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
SsiI CCGC 8 cut(s) 5, 57, 68, 176, 183, 323, 1037, 1109
SspMI CTAG 3 cut(s) 465, 933, 1382
SstI GAGCTC 2 cut(s) 243, 330
StyD4I CCNGG 1 cut(s) 745
StyI CCWWGG 2 cut(s) 618, 1355
TaaI ACNGT 6 cut(s) 105, 364, 412, 1123, 1237, 1258
TaiI ACGT 1 cut(s) 270
TaqI TCGA 4 cut(s) 204, 243, 294, 653
TaqII GACCGA 1 cut(s) 273
TauI GCSGC 1 cut(s) 1039
TfiI GAWTC 3 cut(s) 206, 892, 1241
Tru1I TTAA 4 cut(s) 302, 705, 846, 864
Tru9I TTAA 4 cut(s) 302, 705, 846, 864
TscAI CASTG 1 cut(s) 1314
TspDTI ATGAA 3 cut(s) 465, 981, 1089
TspGWI ACGGA 3 cut(s) 82, 88, 320
TspRI CASTG 1 cut(s) 1314
VpaK11BI GGWCC 1 cut(s) 1250
XapI RAATTY 5 cut(s) 75, 144, 347, 760, 1221
XhoI CTCGAG 1 cut(s) 242
XspI CTAG 3 cut(s) 465, 933, 1382
ZraI GACGTC 1 cut(s) 268
Zsp2I ATGCAT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.